australia - OmicsDI

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Unknown (125957)
Genomics (4067)
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Organisms

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synthetic construct (5)
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Mammalia (1)

Organisms

estuary metagenome (259)
Homo sapiens (228)
fungus metagenome (187)
bioreactor metagenome (109)
soil metagenome (81)
Mus musculus (68)
Taeniopygia guttata (16)
Escherichia coli (16)
Salmonella enterica subsp. enterica serovar Typhimurium (14)
Salmonella enterica subsp. enterica serovar Anatum (13)
Staphylococcus aureus (13)
leaf metagenome (13)
Burkholderia pseudomallei (12)
Rattus norvegicus (12)
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Chlamydia psittaci (11)
bovine gut metagenome (11)
Arabidopsis thaliana (11)
Salmonella enterica subsp. enterica serovar Bovismorbificans (9)
annelid metagenome (9)
Chlamydia pecorum (8)
Galeorhinus galeus (8)
Triticum aestivum (8)
coral metagenome (8)
mixed culture metagenome (8)
sediment metagenome (8)
Salmonella enterica subsp. enterica serovar Saintpaul (7)
Lethrinus laticaudis (7)
Streptococcus pneumoniae (7)
Helicobacter pylori (7)

Repository

ENA (3961)
pride (1936)
biostudies-arrayexpress (1034)
geo (90)
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Tissue

Cell culture (370)
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Disease

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Glioma (1)
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Hypopituitary (1)
Non-diabetic (1)
None- Acute Control (1)
Prostate carcinoma (1)
Normal (1)

Technology Type

Mass Spectrometry (1938)
Shotgun proteomics (958)
Bottom-up proteomics (372)
SWATH MS (214)
Data-independent acquisition (210)
Data-dependent acquisition (207)
Affinity purification coupled with mass spectrometry proteomics (143)
Gel-based experiment (76)
Top-down proteomics (53)
Mass spectrometry (35)
SRM/MRM (25)
Chemical cross-linking coupled with mass spectrometry proteomics (24)
DiaPASEF (21)
Immunopeptidomics (16)
All-ion fragmentation (14)
Mass spectrometry imaging (13)
Mass spectrometry assay (11)
Affinity proteomics (8)
MSE (6)
NMR spectroscopy (4)
Illumina Multi-EthnicGlobal_A1 (1)
ILLUMINA, HiSeq X Ten (1)
Illumina HiSeq 2500 (ILLUMINA) (1)
HiSeq X Ten (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina HumanHap 550K, Illumina HumanHap300-Duo (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Illumina HiSeq 2000 (1)
EI (1)
ESI (1)

Instrument Platform

Illumina NovaSeq 6000 (9)
NextSeq 500 (9)
Illumina HiSeq 2500 (8)
Illumina HiSeq 2000 (6)
BGISEQ-500 (3)
Instrument (3)
GenePix 4000A [Axon Instruments] (2)
GenePix 4000B [Axon Instruments] (2)
HiSeq X Ten (2)
NextSeq 550 (2)
Illumina HiSeq 4000 (2)
Agilent GC-MS 6575 (2)
Affymetrix GCS 3000 (1)
GeneChip® Pico Kit (Affymetrix) (1)
Affymetrix Clariom™ S (400 Format) (1)
PromethION (1)
Agilent Microarray Hybridization Chamber Kit and Hybridization oven rotator (1)
GeneSpring software V12 (Agilent). (1)
BD FACSAria III (1)
GeneSpring software V12 (Agilent) (1)
HiSeq X Five (1)
428 [Affymetrix] (1)
418 [Affymetrix] (1)
ScanArray Express HT [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
Scanning hardware (1)
NA (1)
DNBSEQ-G400 (1)
Illumina HiSeq 3000 (1)
6545 Quadrupole Time-of-flight LC/MS (Agilent instrument model) (1)

Publication Date

2025 (354)
2023 (269)
2026 (264)
2024 (254)
2022 (244)
2021 (235)
2015 (210)
2010 (179)
2020 (151)
2013 (139)
2014 (130)
2019 (122)
2011 (118)
2018 (110)
2016 (99)
2012 (85)
2017 (64)
2008 (48)
2009 (43)
2007 (30)
2006 (13)
2005 (12)
2004 (3)
2003 (2)

UNIPROT ID/AC

P04049 (3)
P27361 (2)
Q02750 (2)
C17270 (1)
P23443 (1)
P42345 (1)
Q08345 (1)
P35568 (1)
Q16850 (1)
Q9BQG2 (1)
B3KXN9 (1)
P48052 (1)
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Q53HM1 (1)
P15085 (1)
F5H7P3 (1)
Q4FEB3 (1)
Q9Y4K0 (1)
Q9HBI6 (1)
P50914 (1)
Q96SQ9 (1)
Q8N118 (1)
Q9HBF5 (1)
Q86W10 (1)
Q86SK9 (1)
P51589 (1)
E9KL42 (1)
Q3I5F7 (1)
F8W816 (1)
P37058 (1)

CHEBI ID

CHEBI:30838 (8)
CHEBI:86989 (1)
CHEBI:50509 (1)
CHEBI:57627 (1)
CHEBI:58414 (1)
CHEBI:57660 (1)
CHEBI:144308 (1)
CHEBI:58600 (1)
CHEBI:72715 (1)
CHEBI:58039 (1)
CHEBI:36986 (1)
CHEBI:45479 (1)
CHEBI:57561 (1)
CHEBI:52965 (1)
CHEBI:57632 (1)
CHEBI:62490 (1)
CHEBI:58052 (1)
CHEBI:57658 (1)
CHEBI:28146 (1)
CHEBI:57836 (1)
CHEBI:18402 (1)
CHEBI:57880 (1)
CHEBI:16466 (1)
CHEBI:58090 (1)
CHEBI:57668 (1)
CHEBI:57391 (1)
CHEBI:57334 (1)
CHEBI:15475 (1)
CHEBI:327995 (1)
CHEBI:46899 (1)

Metabolite Name

Glycine (13)
Glycerol (11)
Ornithine (10)
Succinic acid (10)
Citric acid (10)
Adenosine (10)
L-Tryptophan (10)
Sucrose (10)
L-Valine (10)
Hypoxanthine (10)
D-Glucose (9)
Uracil (9)
Thymine (9)
L-Proline (9)
Mannitol (9)
Palmitic acid (9)
Uridine (9)
L-Isoleucine (9)
L-Tyrosine (9)
L-Phenylalanine (9)
Ethanolamine (8)
Phosphoric acid (8)
Beta-Alanine (8)
L-Alanine (8)
Glycolic acid (8)
Citrulline (8)
Benzoic acid (8)
L-Threonine (8)
Fumaric acid (8)
Taurine (8)

First Public Date

2026 (643)
2025 (580)
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2020 (296)
2018 (282)
2019 (277)
2013 (274)
2021 (237)
2023 (235)
2022 (200)
2017 (149)
2014 (148)
2016 (129)
2015 (96)
2012 (4)
2010 (1)

Modelling Approach

Ordinary differential equation model (20)
Constraint-based model (5)
Deep learning (1)
Logical model (1)

Study status

Completed (194)
Recruiting (132)
Terminated (52)
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Not yet recruiting (52)
Not provided (13)
Withdrawn (3)
Ongoing (2)
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Suspended (1)

Lab affiliation

The University of Melbourne (55)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (33)
Proteomics facility, Central Science Laboratory, University of Tasmania (32)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (29)
The University of Sydney (27)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (19)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (13)
University of Sydney (12)
School of Chemistry and Molecular Biosciences, The University of Queensland, Australia (11)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for infection and immunity, Melbourne, 3000, Australia (10)
Charles Perkins Centre, School of Medical Sciences, University of Sydney, Sydney, Australia. (10)
University of Melbourne (10)
Bioplatforms Australia (9)
Baker Heart and Diabetes Institute (9)
Baker Heart & Diabetes Institute (7)
ARC Centre of Excellence in Plant Energy Biology, M316, 35 Stirling Hwy, 6009, WA, Australia Faculty of Science, The University of Western Australia (6)
Facility Manager, Proteomics Mass Spectrometry, Central Science Laboratory, University of Tasmania (6)
Deputy Head (Research), Department of Biochemistry and Molecular Biology Head Immunoproteomics Laboratory Infection and Immunity Program Room 214, level 2, 15 Innovation Walk Monash Biomedicine Discovery Institute Monash University, Clayton Campus Clayton 3800 Victoria Australia (6)
The University of Queensland (6)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (6)
Department of Molecular Microbiology, Washington University School of Medicine, St Louis, MO 63110, USA. (5)
Infection Program, Monash Biomedicine Discovery Institute, Department of Microbiology, Monash University, VIC 3800, Australia (5)
Department of Microbiology and Immunology, University of Melbourne, Peter Doherty Institute for Infection and Immunity, Melbourne, Victoria, Australia (5)
Baker Heart & Diabetes Inst. (5)
Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Monash Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia (5)
Monash University (5)
WEHI (5)
Macquarie University (5)
Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (5)
Institute of Bioinformatics , International Technology Park, Bangalore, India (4)

Keyword

Bevacizumab (39)
Leucovorin (38)
Fluorouracil (37)
Cetuximab (30)
Oxaliplatin (28)
Irinotecan (25)
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CRC (14)
Colorectal (12)
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Folic Acid (8)
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PD-1 (7)
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Immunotherapy (7)
Trifluridine (6)
Panitumumab (6)
Rectal Cancer (6)
Tislelizumab (5)
Colon (5)
FOLFIRI (5)
Aflibercept (5)
Spartalizumab (5)

IsPrivate

False (31)

Model Flag

Non Kinetic (5)

Submitter Keywords

Immuno-oncology (3)
Oncology (1)
Ersilia (1)
FAIR-AIML (1)
Machine Learning Model (1)
Manuscript Accepted (1)

Classification

bacteria (297)
fungi (21)
viruses (20)
protozoa (2)
helminths (1)

Modification

Not available (13)
4-tetrahydrothiazine-3-carboxylic acid (5)
N6 (4)
N6-dimethyl-L-lysine (3)
57.021464 (3)
42.010565 (2)
15.994915 (2)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
Heavy form - site K (1)
Heavy form (1)
Medium form - site K (1)
Medium form - site N-term (1)
31.989829 (1)
0.984016 (1)
4'-dihydroxyphenylalanine (1)
-18.010565 (1)
-17.026549 (1)
4x(2)H labeled dimethylated L-lysine (1)

Study type

Transcription profiling by array (697)
Interventional (441)
RNA-seq of coding RNA (124)
Unknown experiment type (36)
RNA-seq of non coding RNA (33)
Comparative genomic hybridization by array (27)
Methylation profiling by array (27)
Other (14)
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DNA-seq (6)
Methylation profiling by high throughput sequencing (6)
RNA-seq of total RNA (6)
Transcription profiling by SAGE (5)
Transcription profiling by RT-PCR (5)
MicroRNA profiling by array (5)
Cell line - High-throughput sequencing (4)
Transcription profiling by tiling array (4)
ChIP-seq (4)
RNA-seq of coding RNA from single cells (4)
Genotyping by array (3)
Animal - One-color microarray (2)
ChIP-chip by array (2)
ATAC-seq (2)
Proteomic profiling by array (2)
Animal - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)

Release Date

2022 (15534)
2025 (13377)
2023 (13276)
2021 (12903)
2024 (10867)
2020 (10579)
2019 (8641)
2018 (7682)
2017 (6220)
2016 (5542)
2015 (5012)
2014 (3962)
2013 (2578)
2012 (1955)
2026 (1866)
2011 (1626)
2010 (1284)
2009 (979)
2008 (789)
2007 (518)
2006 (474)
2005 (336)
2004 (238)
2003 (177)
2002 (144)
2001 (134)
2000 (105)
1999 (82)
1998 (81)
1997 (21)

Location

Australia (498)
United States (174)
Spain (134)
France (116)
Canada (108)
Italy (106)
Germany (105)
Belgium (104)
United Kingdom (104)
South Korea (77)
Netherlands (61)
Poland (60)
Czechia (54)
New Zealand (52)
Japan (50)
Israel (49)
Taiwan (48)
Austria (47)
Hungary (43)
Russia (42)
Brazil (37)
Switzerland (37)
Portugal (34)
Sweden (34)
Singapore (33)
China (33)
Argentina (32)
Denmark (30)
Hong Kong (29)
Norway (26)

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Australia

Australia Multiple Sclerosis cases and controls

EGAD00010002117 | EGA

A Genomic History of Aboriginal Australia

The population history of Aboriginal Australians remains largely uncharacterised. We generated high-coverage genomes for 83 Aboriginal Australians (speakers of Pama-Nyungan languages) and 25 Papuans from the New Guinea Highlands. We find that Papuan and Aboriginal Australian ancestors diversified 25...

EGAS00001001766 | EGA

Bacillus anthracis str. Australia 94

Endospore-forming bacteria that causes anthrax

PRJNA10799 | ENA

Ptilotus macrocephalus isolate:Australia (Western Australia)

Ptilotus macrocephalus isolate:Australia (Western Australia) Genome sequencing

PRJNA494463 | ENA

Western Australia soil biocrust

PRJEB30054 | ENA

Sporadic ALS Australia

PRJNA647703 | ENA

Sporadic ALS Australia