bim - OmicsDI

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Genomics (1370)
Unknown (1295)
Transcriptomics (960)
Proteomics (11)
Other (6)
Methylation profiling (2)
Metabolomics (2)
Models (1)
Clinical (1)

Organisms

Homo sapiens (1347)
Mus musculus (441)
Drosophila melanogaster (63)
Arabidopsis thaliana (36)
Saccharomyces cerevisiae (32)
Caenorhabditis elegans (20)
Gallus gallus (17)
Oryza sativa Japonica Group (13)
Danio rerio (10)
Rattus norvegicus (8)
Ovis aries (7)
Mycobacterium tuberculosis (5)
Saccharomyces cerevisiae S288C (5)
Sus scrofa (5)
Schizosaccharomyces pombe (4)
Oryza sativa (4)
Streptomyces venezuelae (4)
Pseudomonas chlororaphis subsp. aureofaciens 30-84 (3)
Bombyx mori (3)
Macaca mulatta (3)
Xenopus laevis (3)
Cryptococcus neoformans (3)
Candida albicans (3)
Sminthopsis crassicaudata (2)
Fusarium fujikuroi (2)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (2)
Aspergillus niger (2)
Anolis carolinensis (2)
Globodera pallida (2)
Brassica juncea (2)

Organisms

Homo sapiens (60)
Mus musculus (59)
Lactiplantibacillus plantarum (3)
Bacillus velezensis (3)
Bacillus pumilus (3)
Agrobacterium tumefaciens (2)
Corynebacterium glutamicum (2)
Pantoea agglomerans (2)
Lactococcus lactis (2)
Pseudarthrobacter sp. BIM B-2242 (1)
Pseudomonas zeae (1)
Leptospira interrogans serovar Bim str. P2529 (1)
Roseateles amylovorans (1)
Leptospira kirschneri serovar Bim str. 1051 (1)
Leptospira kirschneri serovar Bim str. PUO 1247 (1)
Rhodococcus sp. K11/5 (1)
Aeromonas sobria (1)
Aeromonas piscicola (1)
Aeromonas allosaccharophila (1)
Alkalibacterium putridalgicola (1)
Geobacillus thermodenitrificans (1)
Streptomyces netropsis (1)
Hafnia paralvei (1)
Lactiplantibacillus paraplantarum (1)
Anoxybacillus gonensis (1)
Pseudomonas protegens (1)
Dietzia kunjamensis (1)
Leuconostoc mesenteroides (1)
Bacillus altitudinis (1)
Kocuria rhizophila (1)

Repository

biostudies-arrayexpress (1201)
EGA (826)
ENA (184)
geo (122)
pride (6)
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MassIVE (4)
ExpressionAtlas (1)
BioModels (1)
iProX (1)
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MetabolomicsWorkbench (1)

Tissue

Blood (1)
Umbilical vein endothelial cell (1)
Neuron (1)
Embryo (1)
Endothelial cell of umbilical vein (1)
Fibroblast (1)
Liver (1)
T cell (1)

Disease

Normal (1)
Colorectal Neoplasms (1)
COVID-19 (1)
Neuropathy (1)
Disease free (1)

Technology Type

Mass Spectrometry (7)
Illumina HiSeq 2000 (2)
Bottom-up proteomics (2)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II (1)
Mass spectrometry (1)
ESI (1)
Data-independent acquisition (1)
SRM/MRM (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Shotgun proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (107)
NextSeq 500 (107)
Illumina HiSeq 2500 (65)
Illumina HiSeq 2000 (41)
Illumina HiSeq 4000 (38)
NextSeq 550 (32)
NextSeq 2000 (28)
Illumina NovaSeq X (23)
Illumina HiSeq 3000 (14)
Illumina MiSeq (10)
DNBSEQ-G400 (9)
Element AVITI (6)
NA (5)
Illumina HiSeq X (4)
Illumina HiSeq 1500 (4)
Illumina Genome Analyzer IIx (3)
None (3)
Ion Torrent Proton (3)
Illumina iSeq 100 (3)
MinION (3)
HiSeq X Ten (3)
Maxwell 16 LEV-plant RNA kit (2)
General usage Laborartory equipment (2)
Lab Centrifuge (2)
Chromium 10x (2)
PromethION (2)
X (2)
Agilent Bioanalyser (2)
Miltenyi MACS isolation (2)
Not applicable (2)

Publication Date

2015 (191)
2014 (155)
2016 (151)
2013 (103)
2026 (98)
2012 (95)
2024 (82)
2025 (65)
2023 (61)
2020 (55)
2022 (52)
2021 (49)
2019 (44)
2018 (34)
2011 (34)
2010 (23)
2017 (17)
2008 (16)
2007 (8)
2009 (5)
2006 (2)

CHEBI ID

CHEBI:14434 (1)
CHEBI:166843 (1)
CHEBI:46229 (1)
CHEBI:89582 (1)
CHEBI:28393 (1)
CHEBI:68443 (1)
CHEBI:88824 (1)
CHEBI:33283 (1)
CHEBI:28997 (1)
CHEBI:17768 (1)
CHEBI:16497 (1)
CHEBI:82965 (1)
CHEBI:70989 (1)
CHEBI:20794 (1)
CHEBI:17319 (1)
CHEBI:16192 (1)
CHEBI:15918 (1)
CHEBI:17713 (1)
CHEBI:17172 (1)
CHEBI:44215 (1)
CHEBI:21563 (1)
CHEBI:16231 (1)
CHEBI:41321 (1)
CHEBI:75145 (1)
CHEBI:69426 (1)
CHEBI:15611 (1)
CHEBI:16680 (1)
CHEBI:16709 (1)
CHEBI:18132 (1)
CHEBI:17202 (1)

Metabolite Name

Deoxyadenosine monophosphate (dAMP) (1)
Deoxycytidine monophosphate (dCMP) (1)
Uridine diphosphate glucose (UDP-D-Glucose) (1)
NG,NG-Dimethyl-L-arginine (ADMA) (1)
Dihydroxy-acetone-phosphate (1)
Thiamine monophosphate (TMP) (1)
Gamma-Glutamyl-L-methionine (1)
Gamma-L-Glutamyl-L-phenylalanine (1)
Gamma-L-Glutamyl-L-valine (1)
Imidazole (1)
Inosine 5'-monophosphate (IMP) (1)
Beta-D-Glucosamine (1)
7-methylguanosine (1)
Riboflavin (Vitamin B2) (1)
Ethanolamine (1)
L-Lactic acid (1)
Deoxyguanosine triphosphate (dGTP) (1)
Folic acid (1)
2'-Deoxyguanosine 5'-monophosphate (dGMP) (1)
Cytidine 5'-monophosphate (CMP) (1)
L-Carnosine (1)
L-Methionine sulfoxide (1)
L-Citrulline (1)
Ureidopropionic acid (1)
N-Acetyl-D-glucosamine (1)
Cholesterol sulfate (1)
Allantoic acid (1)
Nicotinamide adenine dinucleotide (NAD) (1)
Pyridoxal (Vitamin B6) (1)
N-Acetylcadaverine (1)

First Public Date

2014 (32)
2024 (19)
2020 (19)
2025 (18)
2026 (17)
2023 (14)
2022 (11)
2019 (11)
2021 (10)
2015 (9)
2017 (7)
2016 (7)
2013 (6)
2018 (4)

Modelling Approach

Other (1)

Study status

Completed (1)

Lab affiliation

University Hospital Wuerzburg, Department of Dermatology, Venereology and Allergology (1)
Core Unit Proteomics, Berlin Institute of Health at Charite-Universitaetsmedizin Berlin and Max Delbrueck Center for Molecular Medicine, Berlin, Germany (1)
Zhejiang Chinese Medical University,Hangzhou,China (1)
Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78457 Konstanz (1)
Department of Biochemistry and Chemistry, LIMS, La Trobe University, Kingsbury Drive, Bundoora, Vic 3086, Australia (1)
Icahn School of Medicine at Mount Sinai (1)

Keyword

Simvastatin (1)
Irinotecan (1)
Cetuximab (1)

IsPrivate

False (1)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (8)

Study type

RNA-seq of coding RNA (542)
ChIP-seq (260)
Transcription profiling by array (79)
Methylation profiling by high throughput sequencing (42)
ATAC-seq (31)
DNA-seq (29)
Other (28)
RNA-seq of non coding RNA (27)
RNA-seq of total RNA (25)
CUT&RUN (22)
RNA-seq of coding RNA from single cells (22)
Cell line - High-throughput sequencing (13)
Animal - High-throughput sequencing (11)
Human - High-throughput sequencing (9)
RIP-seq (9)
High-throughput sequencing (7)
Plant - High-throughput sequencing (5)
Bisulfite-seq (4)
Single nucleus RNA sequencing (4)
MNase-seq (3)
4C (3)
Hi-C (3)
CUT&Tag (2)
Comparative genomic hybridization by array (2)
Exome sequencing (2)
Genotyping by high throughput sequencing (2)
Cell line - Single-cell sequencing (1)
Baseline (1)
Unknown experiment type (1)
ChIP-chip by tiling array (1)

Release Date

2015 (257)
2016 (225)
2014 (225)
2012 (153)
2022 (151)
2013 (147)
2024 (145)
2020 (142)
2023 (139)
2021 (131)
2025 (120)
2017 (107)
2019 (105)
2018 (105)
2026 (98)
2011 (70)
2010 (44)
2008 (44)
2009 (37)
2007 (31)
2006 (6)
2005 (6)
2004 (4)
2003 (2)
2002 (1)

Location

South Korea (1)

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BIM is the primary mediator of MYC-induced apoptosis in multiple solid tissues

C-MYC (henceforth MYC) is one of the most frequently overexpressed oncogenes in human cancer and even modestly deregulated MYC expression can initiate ectopic proliferation in many post-mitotic, terminally differentiated cell types in vivo. Metazoan organisms have consequently evolved a number of me...

ORGANISM(S): Homo sapiens

2015-05-18 | E-GEOD-59001 | biostudies-arrayexpress

Cyclin D1 Transgenic Mice with Bim-deficient B-cells

Expression analysis from a genetically engineered mouse model of mantle cell lymphoma (MCL) Gene expression was measured in fourteen mice that overexpress cyclin D1 and delete Bim in their B cells and that were stimulated with sheep red blood cells (SRBC) and irradiation (I), pristane (P) or only SR...

ORGANISM(S): Mus musculus

2014-02-05 | E-GEOD-52214 | biostudies-arrayexpress

Pseudarthrobacter sp. BIM B-2242 isolate:LF-GAL

Pseudarthrobacter sp. BIM B-2242 - Genome sequencing and assembly

PRJNA663464 | ENA

Pseudomonas syringae strain:BIM B-268

Pseudomonas syringae strain:BIM B-268 Genome sequencing

PRJNA691121 | ENA

Aeromonas sobria strain:BIM B-1804 | isolate:No.4

Aeromonas sobria BIM B-1804

PRJNA1452910 | ENA

Bifidobacterium longum strain:BIM B-813D | isolate:Cf-G