bull - OmicsDI

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Unknown (1790)
Genomics (268)
Transcriptomics (91)
Proteomics (46)
Models (16)
Methylation profiling (13)
Metabolomics (9)
Other (2)

Organisms

Bos taurus (80)
Aerococcus urinae NBRC 15544 = CCUG 36881 (41)
Alteromonadales (41)
Candida albicans SC5314 (41)
Canis lupus familiaris (41)
Carya cathayensis (41)
Ectopseudomonas oleovorans CECT 5344 (41)
Ensifer adhaerens (41)
Enterococcus faecalis (41)
Globicatella sanguinis (41)
Halictus scabiosae (41)
Homo sapiens (20)
Mus musculus (12)
Apis mellifera (5)
Metazoa (2)
Mycobacterium tuberculosis variant bovis BCG (2)
Neurospora crassa (2)
Mycobacterium avium (2)
Canis lupus familiaris (2)
Gallus gallus (2)
Bos indicus (2)
Macaca mulatta (1)
Eukaryota (1)
Rattus (1)
Anguilla anguilla (1)
Deformed wing virus (1)
Plasmodium falciparum (1)
Sus scrofa (1)
Bos (1)
Bubalus bubalis (1)

Organisms

Bos taurus (97)
Bos indicus (10)
Mus musculus (6)
Pseudomonas syringae pv. actinidifoliorum (5)
Cottoperca gobio (4)
Nereocystis luetkeana (4)
Bubalus bubalis (4)
semen metagenome (3)
Myoxocephalus scorpius (3)
bovine gut metagenome (3)
Durvillaea antarctica (2)
Campylobacter fetus subsp. venerealis (2)
Carcharhinus leucas (2)
Onthophagus taurus (2)
Bos (2)
Canis lupus familiaris (2)
Homo sapiens (2)
Campylobacter fetus subsp. venerealis bv. intermedius str. 99541 (1)
Leptonema illini (1)
Campylobacter sputorum subsp. sputorum (1)
Mycoplasmopsis bovis (1)
respiratory tract metagenome (1)
plant metagenome (1)
gut metagenome (1)
Gallus gallus (1)

Repository

ENA (256)
biostudies-arrayexpress (63)
geo (52)
pride (41)
BioModels (16)
MetaboLights (8)
EVA (3)
iProX (2)
jPOST (2)
GNPS (1)
MassIVE (1)

Tissue

Sperm (9)
Brain (7)
Semen (5)
Cell culture (3)
Spermatozoon (3)
Blood plasma (2)
Seminal plasma (2)
Testis (2)
Blood cell (1)
Brodmann area 29 (1)
Early embryonic cell (1)
Embryo (1)
Embryonic stem cell (1)
Endosperm (1)
Epididymis secretory cell (1)
Epithelial cell (1)
Hippocampus (1)
Liver (1)
Macrophage (1)
Monocyte (1)
Nematocyst (1)
Oocyte (1)
Plant cell (1)
Root (1)
Seminal vesicle (1)
Skeletal muscle (1)
Spermatocyte (1)
Spermatozoid (1)

Disease

Hypersensitivity reaction type II disease (2)
Liver disease (1)
Urinary bladder cancer (1)
Alzheimer's disease (1)
Pulmonary arterial hypertension (1)
Metarhizium anisopliae infected (1)
Osteosarcoma (1)
Disease free (1)
Infantile hypotonia with psychomotor retardation and characteristic facies-3 (1)
Male infertility (1)
Mixed disorder as reaction to stress (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (41)
Shotgun proteomics (18)
Data-dependent acquisition (13)
Affinity purification coupled with mass spectrometry proteomics (9)
Mass spectrometry (8)
Bottom-up proteomics (7)
Gel-based experiment (6)
Data-independent acquisition (3)
SWATH MS (2)
Top-down proteomics (2)
DiaPASEF (1)

Instrument Platform

Illumina HiSeq 2000 (4)
NextSeq 500 (3)
NanoDrop (2)
Illumina NovaSeq 6000 (2)
Orbitrap ID-X (2)
Gas Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse phase (2)
Tiangen kit/Trizol (1)
Uterine biosy (1)
Hybridized arrays (1)
Total RNA from honey bee brains (1)
Labeled RNA (1)
Honey bee (Apis mellifera) colony. (1)
Brains of infected and control honey bees (1)
White-eye pupae, purified DWV particles (1)
White eye pupae without manipulation. (1)
GenePix 4000A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Illumina NovaSeq X (1)
NextSeq 550 (1)
Illumina HiSeq 2500 (1)
- (1)
Liquid Chromatography MS - alternating - direct infusion (1)
Liquid Chromatography MS - alternating (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2024 (28)
2025 (16)
2020 (15)
2026 (14)
2016 (14)
2015 (13)
2014 (12)
2022 (10)
2021 (9)
2013 (9)
2018 (8)
2017 (6)
2011 (6)
2019 (5)
2023 (5)
2005 (4)
2012 (4)
2010 (3)
2008 (3)
2009 (2)
2007 (2)
2006 (1)

UNIPROT ID/AC

P10145 (1)
P02768 (1)
P05067 (1)
Q5I3B1 (1)
Q9I999 (1)
B0FMT3 (1)
P01137 (1)

CHEBI ID

CHEBI:17822 (4)
CHEBI:15891 (4)
CHEBI:26078 (4)
CHEBI:49033 (3)
CHEBI:26986 (3)
CHEBI:30794 (3)
CHEBI:27266 (3)
CHEBI:17561 (3)
CHEBI:30797 (3)
CHEBI:59132 (2)
CHEBI:89995 (2)
CHEBI:88834 (2)
CHEBI:39196 (2)
CHEBI:49867 (2)
CHEBI:80322 (2)
CHEBI:101085 (2)
CHEBI:28618 (2)
CHEBI:88775 (2)
CHEBI:137225 (2)
CHEBI:86212 (2)
CHEBI:52968 (2)
CHEBI:27754 (2)
CHEBI:17300 (2)
CHEBI:23414 (2)
CHEBI:86251 (2)
CHEBI:1109 (2)
CHEBI:37867 (2)
CHEBI:27594 (1)
CHEBI:33839 (1)
CHEBI:16990 (1)

Metabolite Name

PC(O-22:1(13Z)/22:2(13Z,16Z)) (2)
Cer(D18:0/24:0) (2)
1,3,5-Trithiane (2)
3H-1,2-Dithiole-3-thione (2)
PC(O-18:0/20:0) (2)
Silver(1+) sulfadiazinate (2)
Adrenorphin (2)
1,3-Diphenylpropane (2)
Levomethadyl acetate (2)
Pancuronium (2)
PC(18:0/24:0) (2)
Iopentol (2)
Methacrylyl-CoA (2)
Copper(ii) sulfate (2)
Acrylyl-CoA (2)
PC(O-18:0/22:0) (2)
Butyryl-CoA (2)
Aluminium octadecanoate (2)
Haloprogin (2)
Tricosane (2)
Guanosine 3'-diphosphate 5'-triphosphate (2)
Trichloroethylene (2)
Beta-D-Glucosyl-N-(oleoyl)sphingosine (2)
[4-hydroxy-2-({[hydroxy({[hydroxy({[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy})phosphoryl]oxy})phosphoryl]oxy}methyl)-5-(4-hydroxy-2-oxo-1,2-dihydropyrimidin-1-yl)oxolan-3-yl]oxidanesulfonic acid (2)
3-Phosphoadenylylselenate (2)
Sabinene (2)
Metrizamide (2)
5-Chloroorsellinic acid (2)
Flecainide (2)
Tetracosatetraenoic acid (24:4N-6) (2)

First Public Date

2024 (30)
2025 (25)
2021 (23)
2026 (21)
2020 (20)
2022 (17)
2014 (16)
2023 (15)
2018 (15)
2017 (15)
2019 (14)
2016 (14)
2015 (14)
2013 (14)
2012 (2)
2010 (1)

Modelling Approach

Ordinary differential equation model (16)

Lab affiliation

Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (6)
China Agricultural University, College of Animal Science and Technolgoy, Animal genetics and breeding (2)
Teagasc (2)
Animal Bioscience Department, Teagasc (lab head) (1)
Assistant Professor, Mass spectrometry Facility, Canadian Centre for Health and Safety in Agriculture, College of Medine, University of Saskatchewan. (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands. Netherlands Proteomic Center, Padualaan 8, 3584 CH, Utrecht, The Netherlands. (1)
CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (1)
CSIRO Food Futures National Research Flagship, Division of Livestock Industries, Queensland Biosciences Precinct, St. Lucia, Queensland, Australia (1)
Departamento de Biología Celular, Biología Funcional y Antropología Física, Universitat de València, 46100 Valencia, Spain (1)
Department of Cell Biology, Functional Biology and Physical Anthropology Universitat de València, 46100 Valencia, Spain. (1)
Department of Zootechnics, University of Trás-os-Montes and Alto Douro, Portugal (1)
Dr Rakesh Kumar Principal Scientist, Animal Biotechnology, ICAR-National Dairy Research Institute, Karnal, Haryana, India (1)
Faculdade de Medicina Veterinária de Lisboa (1)
Fudan university (1)
Georg-August-University Göttingen Department of Molecular Microbiology and Genetics Institute of Microbiology and Genetics (1)
IBP RAS (1)
Institute for Clinical Chemistry, Medical Faculty Mannheimof the University of Heidelberg (lab head) (1)
Institute of Cerebrovascular Diseases Research, Xuanwu Hospital of Capital Medical University, Beijing, China (1)
Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing, China (1)
Institute of Molecular Plant Biology (IMPB), Department of Biology, ETH Zurich (1)
Instituto Valenciano de Investigaciones Agrarias (IVIA), Polígono La Esperanza nº 100, 12400 Segorbe, Castellón, Spain (1)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (1)
Lund University (1)
Lund university (1)
M.V.Sc., PG Diploma in IPR, Master of IP Law, Ph.D, ARS Head, Southern Campus of ICAR-National Dairy Research Institute, Adugodi, Bangalore, India, 560030 (1)
Marine Biotechnology and Therapeutics, Faculty of Life Sciences and Medicine, King's College London (1)
National Dairy Research Institute (1)
Pompeu Fabra University (1)
Precision Medicine Theme, South Australian Health and Medical Research Institute, Adelaide, SA, 5001, Australia (1)
Principal Scientist ICAR-National Dairy Research Institute (1)

IsPrivate

False (16)

Submitter Keywords

Immuno-oncology (3)

Classification

bacteria (4)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (8)
Methylation profiling by array (4)
RNA-seq of non coding RNA (4)
RNA-seq of coding RNA from single cells (2)
Differential (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Other (1)
MicroRNA profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)

Release Date

2022 (208)
2023 (207)
2021 (188)
2020 (166)
2024 (131)
2025 (126)
2019 (121)
2018 (99)
2017 (90)
2016 (88)
2015 (72)
2014 (70)
2013 (69)
2012 (53)
2009 (31)
2011 (29)
2010 (25)
2026 (24)
2008 (14)
2006 (14)
2007 (9)
2005 (7)
2003 (5)
2004 (2)
2002 (1)
2000 (1)
1999 (1)
1998 (1)
1997 (1)

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Metabolomic fingerprinting of bull spermatozoa for identification of fertility signature metabolites

The objective of the study was to identify the fertility-associated metabolites in bovine spermatozoa using liquid chromatography-mass spectrometry (LC-MS). Six Holstein Friesian crossbred bulls (three high-fertile and three low-fertile bulls) were the experimental animals. Sperm proteins were isola...

2021-12-07 | MTBLS1071 | MetaboLights

Deciphering metabolomic alterations in seminal plasma of crossbred (Bos taurus X Bos indicus) bulls through comparative deep metabolomic analysis

The incidence of sub-fertility is higher in crossbred bulls compared to zebu bulls. In the present study, we analysed the metabolomic profile of seminal plasma from crossbred and zebu bulls and uncovered differentially expressed metabolites between these two breeds. Using a high-throughput LC-MS/MS-...

2021-12-22 | MTBLS1642 | MetaboLights

bull metagenome

PRJNA438952 | ENA

Decoding bull fertility in vitro: A proteomics exploration from sperm to blastocyst

Embryo development, In vitro fertilization, Bull fertility, Polyspermy, Proteomics Project description: The correlation between sperm traits, fertilization and embryonic development outcomes were investigated by means of functional in vitro assays and mass spectrometry-based proteomics experiments. ...

ORGANISM(S): Bos taurus (Bovine)

2025-03-28 | PXD054561 | Pride

bull and bison content and tissue

bull and bison Targeted loci

PRJNA438535 | ENA

Infertility in a Holstein bull

PRJEB60952 | ENA

Proteomic analysis underlying the impact of early life nutrition on the molecular control of testicular development in the young bull calf.

It has been established that enhanced early life nutrition progresses sexual development in the bull calf through neuroendocrine signalling via the hypothalamic-pituitary-testicular axis. However, the underlying molecular mechanisms regulating this process have not been fully elucidated. This study ...

ORGANISM(S): Bos taurus (Bovine)

2022-08-30 | PXD031403 | Pride

Bull calf Nutrition Protein Early life Testes

Bull plasma proteomes at different seasons

Analysis of bull seminal plasma from different time points.

ORGANISM(S): Bos taurus (Bovine)

2021-06-14 | PXD021241 | Pride

Seminal plasma Label free Bos taurus

Bull sperm SWATH-MS-based proteomics reveals link between high fertility and energy production, motility structures, and sperm-oocyte interaction. Quantitation

Prediction of male or semen fertility potential remains a persistent challenge that has yet to be fully resolved. This work analyzed several in vitro parameters and proteome of spermatozoa in bulls cataloged as high (HF; n=5) and low field (LF; n=5) fertility after more than a thousand artificial in...

ORGANISM(S): Bos taurus (Bovine)

2023-10-18 | PXD042286 | Pride

Flow cytometry computer-assisted sperm analysis sperm bull fertility proteome

Bull Shark (Carcharhinus leucas) Occurrence along Beaches of South-Eastern Australia: Understanding Where, When and Why.

Not available

S-EPMC10526001 | biostudies-literature

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