c18. - OmicsDI

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Proteomics (23968)
Unknown (2893)
Metabolomics (2112)
Transcriptomics (268)
Genomics (156)
Other (30)
Clinical (12)
Multiomics (4)
Genomic (3)

Organisms

Homo sapiens (187)
Mus musculus (143)
Mycobacterium tuberculosis (17)
Saccharomyces cerevisiae (10)
Rattus norvegicus (10)
Drosophila melanogaster (9)
Arabidopsis thaliana (8)
Bos taurus (6)
Staphylococcus aureus (6)
Pseudomonas aeruginosa (5)
Chlamydomonas reinhardtii (4)
Glycine max (4)
Sus scrofa (4)
Zea mays (4)
Mycobacterium avium subsp. paratuberculosis (2)
Daphnia magna (2)
Mycobacterium tuberculosis H37Rv (2)
Dinoroseobacter shibae DFL 12 = DSM 16493 (2)
Ursus arctos (1)
Punica granatum (1)
Staphylococcus aureus subsp. aureus RN4220 (1)
Lactococcus lactis subsp. lactis Il1403 (1)
Nicotiana attenuata (1)
Capra hircus (1)
Populus x canadensis (1)
Anguilla anguilla (1)
Mycobacterium tuberculosis variant bovis BCG str. Pasteur 1173P2 (1)
Mycobacterium tuberculosis CDC1551 (1)
Streptococcus pyogenes (1)
Malassezia sympodialis (1)

Organisms

Mus musculus (24)
Homo sapiens (12)
groundwater metagenome (7)
hot springs metagenome (6)
tidal flat metagenome (3)
marine metagenome (3)
lake water metagenome (3)
sediment metagenome (3)
Marine group II euryarchaeote SCGC AAA288-C18 (2)
Dinoroseobacter shibae DFL 12 = DSM 16493 (2)
hypersaline lake metagenome (2)
Brassica napus (2)
Marchantia polymorpha (2)
freshwater metagenome (2)
Caperea marginata (1)
Methanobrevibacter ruminantium (1)
Sphingomonas sp. JGI 0001002-C18 (1)
Halomonas alkalicola (1)
Ettlia oleoabundans (1)
Parcubacteria group bacterium JGI CrystG Apr3-2-C18 (1)
Parcubacteria group bacterium JGI MDM2 ZSSED05-1-C18 (1)
Burkholderia sp. JGI 0001021-C18 (1)
Chroomonas sp. SCCAP K-1623 (1)
Nicotiana attenuata (1)
Streptomyces seoulensis (1)
Methanococcus maripaludis (1)
Thlaspi arvense (1)
Haliotis discus hannai (1)
salt lake metagenome (1)
Sebastes schlegelii (1)

Repository

pride (23398)
MetaboLights (1275)
GNPS (549)
MassIVE (391)
MetabolomicsWorkbench (269)
biostudies-arrayexpress (235)
ENA (147)
jPOST (141)
iProX (49)
geo (44)
NODE (24)
PeptideAtlas (5)
dbGaP (3)
GPMDB (3)
EGA (2)
EVA (1)
PAXDB (1)

Tissue

Blood (106)
Liver (23)
Muscle (20)
Cultured cells (18)
Feces (15)
Adipose tissue (11)
Spinal cord (9)
Urine (7)
Unspecified (6)
Brain (6)
Bacterial cells (6)
Heart (5)
Eye tissue (5)
Macrophages (4)
Fibroblast cells (3)
Colon (3)
Cecum (3)
Kidney (3)
Ovarian cancer cells (2)
Skin (2)
Duodenum (2)
Astrocyte cells (2)
Bone marrow (2)
Intestine (2)
Lung (2)
HeLa cells (2)
Hep G2 cells (2)
T-cells (2)
Worms (2)
Esophagus (2)

Disease

Glioblastoma (70)
Cancer (38)
Diabetes (15)
Obesity (10)
Fatty liver disease (10)
Spinal cord injury (9)
Malaria (6)
Irritable bowel syndrome (4)
Alzheimers disease (4)
Cachexia (4)
Chronic kidney disease (4)
Not Available (3)
COPD (3)
Inflammatory bowel disease (3)
Environmental exposure (3)
Inflammation (3)
Eye disease (3)
Colorectal Neoplasms (2)
Mitochondrial disease (1)
Mixoid liposarcoma (1)
Colorectal Cancer, Stage 4 (1)
Malignant neoplasm of colon, Malignant neoplasm of rectosigmoid junction, Malignant neoplasm of rectum, Malignant neoplasm of anus and anal canal (1)
Malignant neoplasm of colon. C19 Malignant neoplasm of rectosigmoid junction. C20 Malignant neoplasm of rectum (1)
Colo-rectal cancer (1)
C18-20 (1)
Cancer fatigue (1)
Family risk for colorectal cancer (ICD-10 coding: C18, C19, C20) (1)
Colorectal cancer (1)
Colorectal cancer (1)
Neoplasms (1)

Technology Type

Mass Spectrometry (23658)
Shotgun proteomics (12797)
Bottom-up proteomics (4256)
Affinity purification coupled with mass spectrometry proteomics (2680)
Data-dependent acquisition (2543)
Gel-based experiment (1413)
Data-independent acquisition (1248)
SWATH MS (924)
Mass spectrometry (900)
Top-down proteomics (709)
Chemical cross-linking coupled with mass spectrometry proteomics (577)
Mass spectrometry assay (374)
SRM/MRM (327)
HDMSE (245)
ESI (241)
All-ion fragmentation (138)
MSE (130)
DiaPASEF (114)
Affinity proteomics (79)
Immunopeptidomics (49)
Mass spectrometry imaging (41)
Proteogenomics (38)
EI (14)
NMR spectroscopy (11)
NMR (9)
Other (4)
Unspecified (2)
NMR spectroscopy assay (1)
Multiple (1)
MALDI (1)

Instrument Platform

Q Exactive (379)
MaXis (134)
Orbitrap Exploris 240 (80)
Orbitrap Fusion (52)
Q Exactive Plus (38)
Q Exactive HF (20)
Impact (18)
Impact HD|MS:1002667 (16)
Impact II (9)
6545 Q-TOF LC/MS (5)
Agilent 7890 A - 5975 C GC/MS (5)
Illumina HiSeq 2500 (4)
Illumina MiSeq (3)
Bioanalyser (2)
Illumina HiSeq 1500 (2)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
Chromium Next GEM Single Cell 3ʹ Reagent Kits v3.1 (1)
ScanArray 5000 [PerkinElmer] (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
NanoDrop (1)
Variable Atmosphere Incubator (1)
Illumina Genome Analyzer II (1)
DNBSEQ-G400 (1)
Illumina HiSeq 1000 (1)
DNBSEQ-T7 (1)
BGISEQ-500 (1)
Illumina HiSeq 2000 (1)
- (1)

Publication Date

2025 (4312)
2024 (3249)
2022 (3160)
2023 (3055)
2021 (2549)
2026 (2446)
2020 (1953)
2019 (1607)
2018 (1349)
2017 (843)
2016 (643)
2015 (423)
2014 (201)
2013 (52)
2012 (41)
2010 (38)
2011 (25)
2008 (25)
2009 (13)
2007 (9)
2005 (8)
2027 (4)
2006 (2)

UNIPROT ID/AC

8030.ENSSSAP00000000285 (1)
8030.ENSSSAP00000000573 (1)
8030.ENSSSAP00000000871 (1)
8030.ENSSSAP00000001022 (1)
8030.ENSSSAP00000001240 (1)
8030.ENSSSAP00000001511 (1)
8030.ENSSSAP00000001597 (1)
8030.ENSSSAP00000002059 (1)
8030.ENSSSAP00000002148 (1)
8030.ENSSSAP00000002643 (1)
8030.ENSSSAP00000002671 (1)
8030.ENSSSAP00000002680 (1)
8030.ENSSSAP00000002684 (1)
8030.ENSSSAP00000002690 (1)
8030.ENSSSAP00000002813 (1)
8030.ENSSSAP00000003421 (1)
8030.ENSSSAP00000003619 (1)
8030.ENSSSAP00000004639 (1)
8030.ENSSSAP00000004862 (1)
8030.ENSSSAP00000005034 (1)
8030.ENSSSAP00000005246 (1)
8030.ENSSSAP00000005299 (1)
8030.ENSSSAP00000005382 (1)
8030.ENSSSAP00000005521 (1)
8030.ENSSSAP00000005622 (1)
8030.ENSSSAP00000006110 (1)
8030.ENSSSAP00000006568 (1)
8030.ENSSSAP00000006671 (1)
8030.ENSSSAP00000006691 (1)
8030.ENSSSAP00000006723 (1)

CHEBI ID

CHEBI:30769 (198)
CHEBI:17368 (177)
CHEBI:16335 (172)
CHEBI:15891 (172)
CHEBI:27897 (172)
CHEBI:17596 (170)
CHEBI:16704 (167)
CHEBI:15428 (163)
CHEBI:28044 (157)
CHEBI:30915 (155)
CHEBI:16919 (153)
CHEBI:16708 (151)
CHEBI:15354 (150)
CHEBI:6650 (149)
CHEBI:16750 (148)
CHEBI:25017 (148)
CHEBI:18186 (147)
CHEBI:29016 (146)
CHEBI:17568 (145)
CHEBI:16811 (144)
CHEBI:27266 (142)
CHEBI:18012 (142)
CHEBI:26271 (141)
CHEBI:17154 (141)
CHEBI:17750 (141)
CHEBI:16737 (141)
CHEBI:28300 (139)
CHEBI:16610 (139)
CHEBI:25094 (137)
CHEBI:32816 (137)

Metabolite Name

Hypoxanthine (137)
Adenosine (123)
Taurine (119)
Adenine (116)
Uridine (115)
Guanosine (113)
Creatine (112)
Inosine (107)
Choline (105)
L-Tyrosine (105)
Citric acid (103)
L-Phenylalanine (103)
Uracil (101)
Xanthine (99)
Cytosine (98)
Creatinine (97)
Guanine (95)
L-Tryptophan (95)
Azelaic acid (94)
Taurine (90)
Isoleucine (90)
Betaine (90)
Spermidine (90)
Cytidine (90)
Glycine (88)
L-Histidine (88)
L-Glutamine (88)
Pantothenic acid (87)
Uridine (86)
Proline (86)

First Public Date

2025 (18)
2018 (16)
2014 (16)
2024 (15)
2026 (13)
2019 (11)
2017 (11)
2022 (9)
2021 (9)
2023 (8)
2013 (8)
2020 (7)
2016 (5)
2015 (1)

Classification

bacteria (4)

Modification

4x(15)N labeled L-arginine (56)
2x(15)N labeled L-lysine (54)
4-tetrahydrothiazine-3-carboxylic acid (36)
N6 (32)
15.994915 (26)
N6-dimethyl-L-lysine (22)
57.021464 (21)
42.010565 (14)
Not available (14)
-17.026549 (11)
4x(2)H labeled dimethylated residue (11)
4 (8)
-18.010565 (5)
15.99491 (5)
57.02146 (5)
6x(2)H labeled dimethylated L-arginine (5)
+3amu) (4)
4x(2)H labeled dimethylated L-lysine (4)
58.005479 (4)
71.037114 (4)
79.966331 (4)
0.984 (3)
0.984016 (2)
3x(2)H labeled N6-acetyl-L-lysine (2)
4'-dihydroxyphenylalanine (2)
45.029395 (2)
6-dioxaoctanediamine derivatized cysteine (2)
Heavy form - site K (2)
0.9840160012245178 (1)
10.008269 (1)

Study status

Completed (7)
Not yet recruiting (3)
Recruiting (2)

Study type

Transcription profiling by array (184)
RNA-seq of coding RNA (25)
Interventional (11)
ChIP-seq (4)
Methylation profiling by array (3)
Animal - One-color microarray (2)
Cell line - High-throughput sequencing (2)
Proteomic profiling by mass spectrometer (2)
Comparative genomic hybridization by array (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Human - High-throughput sequencing (1)
Cell line - One-color microarray (1)
High-throughput sequencing (1)
Transcription profiling by tiling array (1)
Other (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)
Observational (1)

Release Date

2022 (378)
2024 (376)
2023 (309)
2021 (280)
2025 (271)
2020 (264)
2019 (204)
2018 (181)
2017 (150)
2016 (129)
2015 (108)
2014 (100)
2013 (84)
2012 (59)
2010 (44)
2011 (41)
2026 (39)
2008 (36)
2009 (26)
2007 (20)
2006 (12)
2005 (5)
2001 (2)
1998 (2)
2004 (1)
2003 (1)
2002 (1)
2000 (1)
1999 (1)
1997 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (117)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (94)
EDyP (75)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (64)
Head of the Curie Institute Mass Spectrometry Platform (59)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (50)
University of Victoria (45)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (43)
Head of Proteomics (40)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (36)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (33)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States (32)
University of Edinburgh (28)
Functional Proteomics, ICR (27)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (27)
The Institute of Cancer Research (26)
Vanderbilt University (26)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (25)
UCSF (25)
Utrecht University (25)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (24)
Institute of Molecular Biology (IMB) (24)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (23)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (23)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (23)
North Carolina State University (23)
Mendel University in Brno (22)
University of Oxford (22)
University of Washington (21)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (20)

Location

Iran (8)
Germany (3)
Aland Islands (1)
United States (1)

Keyword

Dekristol® 20 000 I.E. Weichkapseln (1)
Dekristol® 1000 I.E. Tabletten (1)
Rectosigmoid (1)
Rectum (1)
Colon (1)
Irinotecan (1)
Leucovorin (1)
Bevacizumab (1)
Fluorouracil (1)

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Burkholderia sp. JGI 0001021-C18

PRJNA183578 | ENA

Sphingomonas sp. JGI 0001002-C18

PRJNA176079 | ENA

Bacillus thuringiensis strain:C18

Bacillus thuringiensis strain:C18 Genome sequencing

PRJNA1297396 | ENA

Knockout mice reveal key roles for claudin-18 in alveolar fluid homeostasis.

Claudin proteins are major constituents of epithelial and endothelial tight junctions (TJ), where they serve as regulators of paracellular permeability to ions and solutes. Claudin-18, a member of the large claudin family, is highly expressed in lung epithelium. To elucidate the role of claudin-18 i...

ORGANISM(S): Mus musculus

2014-04-06 | E-GEOD-48443 | biostudies-arrayexpress

Marine group II euryarchaeote SCGC AAA288-C18

Marine group II euryarchaeote SCGC AAA288-C18 Genome sequencing and assembly

PRJNA66859 | ENA

RNA-seq of C18-4 cells samples from differentlncRNA5251 modification groups

PRJNA598130 | ENA

Parcubacteria group bacterium JGI CrystG Apr3-2-C18

Parcubacteria group bacterium JGI CrystG Apr3-2-C18 Genome sequencing

PRJNA402980 | ENA

Parcubacteria group bacterium JGI MDM2 ZSSED05-1-C18

Parcubacteria group bacterium JGI MDM2 ZSSED05-1-C18 Genome sequencing