calcium-dependent protein kinases

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Transcriptomics (453)
Unknown (403)
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Organisms

Homo sapiens (216)
Mus musculus (140)
Arabidopsis thaliana (33)
Rattus norvegicus (27)
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Plasmodium falciparum 3D7 (12)
Drosophila melanogaster (11)
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Oryza sativa (8)
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Organisms

Plasmodium falciparum 3D7 (6)
Arabidopsis thaliana (5)
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Homo sapiens (2)
Lactuca sativa var. angustana (1)
Eragrostis tef (1)
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Oryza sativa (1)
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Repository

biostudies-arrayexpress (459)
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Cell (1)
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Disease

Not Available (3)
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Primary effusion lymphoma (PEL) (1)
Ischaemia reperfusion injury (1)
Not infected (1)
Reference (1)
Acute promyelocytic leukemia (1)
Normal (1)
Autism spectrum disorder (1)
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Malaria (1)
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Technology Type

Mass Spectrometry (31)
Shotgun proteomics (18)
Mass spectrometry (10)
Bottom-up proteomics (6)
Gel-based experiment (5)
Mass spectrometry assay (4)
Data-dependent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Illumina HiScanSQ, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
HiSeq X Ten (1)
Illumina Genome Analyzer II (1)

Instrument Platform

Q Exactive (12)
Illumina HiSeq 2000 (7)
Orbitrap Fusion Lumos (6)
NextSeq 500 (5)
LTQ Orbitrap Velos (5)
Illumina HiSeq 2500 (4)
Instrument (3)
LTQ Orbitrap Elite (3)
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Illumina NovaSeq 6000 (2)
LTQ Orbitrap (2)
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ScanArray 4000XL [PerkinElmer] (1)
Illumina Genome Analyzer II (1)
None (1)
Ion Torrent Proton (1)
NextSeq 2000 (1)
Illumina HiSeq 1000 (1)
BGISEQ-500 (1)
HiSeq X Ten (1)
Illumina MiSeq (1)
Synapt G2-S HDMS (1)

Publication Date

2010 (69)
2015 (67)
2013 (63)
2012 (55)
2014 (54)
2008 (48)
2016 (31)
2011 (27)
2007 (22)
2009 (21)
2024 (18)
2022 (17)
2021 (14)
2025 (12)
2018 (12)
2017 (12)
2023 (12)
2026 (11)
2020 (10)
2019 (9)
2006 (2)
2005 (2)
2004 (2)

UNIPROT ID/AC

Q99PS2 (2)
Q03114 (2)
Q9UD71 (2)
1FEH1_WHEAT (2)
4565.Traes_1AL_3CF82DD08.2 (2)
4565.Traes_1AL_3FDB6FDB4.1 (2)
4565.Traes_1AL_44FB362A9.2 (2)
4565.Traes_1AL_4E621A250.2 (2)
4565.Traes_1AL_51D597B92.1 (2)
4565.Traes_1AL_52E56C8D3.1 (2)
4565.Traes_1AL_53F3380AF.1 (2)
4565.Traes_1AL_5E2C30B46.1 (2)
4565.Traes_1AL_6B64D0E80.1 (2)
4565.Traes_1AL_72202D9DF.1 (2)
4565.Traes_1AL_738358449.1 (2)
4565.Traes_1AL_78CB13657.2 (2)
4565.Traes_1AL_7B509569F.1 (2)
4565.Traes_1AL_7CF571E9F.1 (2)
4565.Traes_1AL_7D6DC73FC.2 (2)
4565.Traes_1AL_9C2D7A0A6.1 (2)
4565.Traes_1AL_9EFC68149.1 (2)
4565.Traes_1AL_A47D32D30.1 (2)
4565.Traes_1AL_A69755144.1 (2)
4565.Traes_1AL_B15921488.1 (2)
4565.Traes_1AL_BAAF4391C.1 (2)
4565.Traes_1AL_BAB3D977B.1 (2)
4565.Traes_1AL_D06A380E9.2 (2)
4565.Traes_1AL_D39C4F23A.2 (2)
4565.Traes_1AL_D789B5634.1 (2)
4565.Traes_1AL_D8B97BD8D.1 (2)

CHEBI ID

CHEBI:16027 (4)
CHEBI:16856 (4)
CHEBI:15741 (4)
CHEBI:28716 (4)
CHEBI:15843 (3)
CHEBI:15978 (3)
CHEBI:21547 (3)
CHEBI:37024 (3)
CHEBI:28867 (3)
CHEBI:7916 (3)
CHEBI:27897 (3)
CHEBI:17154 (3)
CHEBI:17311 (3)
CHEBI:16919 (3)
CHEBI:18183 (3)
CHEBI:28300 (3)
CHEBI:25094 (3)
CHEBI:28875 (3)
CHEBI:30769 (3)
CHEBI:28822 (3)
CHEBI:6650 (3)
CHEBI:18237 (3)
CHEBI:15756 (3)
CHEBI:17929 (3)
CHEBI:32425 (3)
CHEBI:17489 (2)
CHEBI:29108 (2)
CHEBI:53486 (2)
CHEBI:65136 (2)
CHEBI:73707 (2)

Metabolite Name

Glutamine (3)
Arginine (3)
Acetoacetate (2)
2-Aminoadipic acid (2)
Gamma-Glutamylglutamine (2)
Gamma-Glutamylleucine (2)
LPC 16:0 (2)
UMP (2)
Uracil (2)
Lysine (2)
Threonine (2)
Aspartic acid (2)
Docosahexaenoic acid (2)
Pyruvic acid (2)
Docosatrienoic acid (2)
Gamma-Glutamyltyrosine (2)
Arachidonic acid (2)
Beta-Nicotinamide adenine dinucleotide (2)
Glyceraldehyde-3-phosphate (2)
Undecanedioic acid (2)
Glutathione (2)
Lactate (2)
ATP (2)
AMP (2)
ADP (2)
Acetyl-CoA (2)
L-Phenylalanine (2)
L-Glutamic acid (2)
Leucine (2)
Acetylcholine (2)

First Public Date

2014 (13)
2022 (4)
2024 (2)
2026 (1)
2025 (1)
2023 (1)
2021 (1)
2018 (1)
2017 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (2)

Lab affiliation

Department of Biological Sciences, University of Alberta (2)
chemistry biochemistry UCSD (2)
1 Department of Biology, University of Crete, 714 09 Heraklion, Crete, Greece 2 Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, Heraklion, Crete, Greece (1)
Biotechnology Department, Faculty of Biology, Adam Mickiewicz University, Umultowska Street 89, 61-614 Poznań, Poland (1)
Biozentrum der LMU München Pflanzenwissenschaften Großhaderner Str. 2-4 82152 Planegg-Martinsried phone +49 +89 2180 74760 (1)
Center for Desert Agriculture, 4700 King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia (1)
Children's National Hospital (1)
Department of Biochemistry (1)
Department of Hematology and Central Hematology Laboratory, Inselspital, Bern University Hospital, University of Bern, Switzerland Department for BioMedical Research (DBMR), University of Bern, Switzerland (1)
Department of Molecular Microbiology and Molecular Medicine, Faculty of Medicine, University of Geneva, Switzerland (1)
Department of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University (1)
Department of Pharmacology, University of Arizona College of Medicine, Tucson (1)
Ehime University (1)
Faculty Scientist, Institute of Bioinformatics, Bangalore, India (1)
Federal Scientific Centre of the East Asia Terrestrial Biodiversity of the Far East Branch of the Russian Academy of Sciences, Vladivostok, 690022, Russia (lab head) (1)
Institute of Bioinformatics, 7th floor, Discoverer building, International Tech Park, Bangalore 560 066 (1)
Institute of Bioinformatics, ITPB, Bangalore, India (1)
Key laboratory of Research and Development for Resource Plant, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine Yenepoya Research Centre Yenepoya (Deemed to be University) University Road, Deralakatte Mangalore 575018, India (1)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), Mangalore 575018, India (1)
Proteomics Support Group, The Sainsbury Laboratory, Norwich, UK (1)
Shanghai Center for Plant Stress Biology (1)
Shanghai Institue of Materia Medica (1)
Synapse Proteomics Group, Children's Medical Research Institute, University of Sydney, Westmead, New South Wales, Australia (1)
Systems Biology Center NHLBI NIH U.S.A. (1)
The Francis Crick Institute Signalling in Apicomplexan Parasites Laboratory London NW1 1AT United Kingdom (1)
University of Insubria (1)
University of Maryland Baltimore County Department of Biological Sciences Baltimore, MD (1)
children's national hospital (1)

IsPrivate

False (2)

Classification

protozoa (8)

Study type

Transcription profiling by array (337)
RNA-seq of coding RNA (55)
ChIP-seq (22)
Unknown experiment type (13)
ChIP-chip by tiling array (5)
Comparative genomic hybridization by array (5)
Cell line - High-throughput sequencing (3)
ChIP-chip by array (3)
RNA-seq of non coding RNA (3)
Transcription profiling by RT-PCR (2)
Other (2)
Transcription profiling by SAGE (1)
Cell line - One-color microarray (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
DNA-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)

Release Date

2015 (89)
2010 (85)
2014 (75)
2013 (73)
2012 (61)
2008 (56)
2016 (46)
2011 (41)
2022 (35)
2020 (31)
2017 (31)
2021 (29)
2019 (29)
2025 (27)
2009 (27)
2018 (26)
2007 (26)
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2026 (6)
2006 (4)
2004 (4)
2001 (4)
2005 (2)
2002 (2)
2003 (1)
2000 (1)

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A delicate balance in cellular signaling is required for plants to distinguish mutualist from parasitic organisms in its environment. Mitogen-activated protein kinase (MAPK) cascades are one of the signaling modules that mediate transduction of extracellular microbial signals into appropriate cellul...

2017-08-25 | MTBLS441 | MetaboLights

Epistasis studies reveal redundancy among calcium-dependent protein kinases in motility and invasion of malaria parasites

In malaria parasites, evolution of parasitism has been linked to functional optimisation. Despite this optimisation, most members of a calcium-dependent protein kinase (CDPK) family show genetic redundancy during erythrocytic proliferation. To identify relationships between phospho-signalling pathwa...

ORGANISM(S): Plasmodium berghei ANKA

2018-09-17 | PXD011096 | Pride

Abscisic acid-induced degradation of Arabidopsis guanine nucleotide exchange factor requires calcium-dependent protein kinases, part 2

Abscisic acid (ABA) plays essential roles in plant development and responses to environmental stress. ABA induces subcellular translocation and degradation of the guanine nucleotide exchange factor RopGEF1 thus facilitating ABA core signal transduction. However, the underlying mechanisms for ABA-tri...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2019-11-12 | PXD009422 | Pride

Ropgef Cpk4 Arabidopsis Aba

A role for barley calcium-dependent protein kinase CPK2a in the response to drought

Increasing the drought tolerance of crops is one of the most challenging goals in plant breeding. To improve crop productivity during periods of water deficit, it is essential to understand the complex regulatory pathways that adapt plant metabolism to environmental conditions. Among various plant h...

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) Nicotiana benthamiana Hordeum vulgare (Barley) Escherichia coli

2016-12-23 | PXD005095 | Pride

Drought stress Mass spectrometry Calcium-dependent kinase Phosphorylation Hordeum vulgare l. Post-translational modification (ptm)

Abscisic acid-induced degradation of Arabidopsis guanine nucleotide exchange factor requires calcium-dependent protein kinases, part 1

ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress)

2019-11-12 | PXD009421 | Pride

Cpk4 Arabidopsis Ropgef1 Aba

Allosteric activation of apicomplexan calcium-dependent protein kinases.

Not available

S-EPMC4568647 | biostudies-literature

CaMKII inhibition in smooth muscle cells controls Ang-II-induced gene transcription in the aorta

The Ca2+/calmodulin-dependent kinase II is expressed in smooth muscle and believed to mediate intracellular calcium handling and calcium-dependent gene transcription. CaMKII is activated by Angiotensin-II. The multifunctional calcium/calmodulin-dependent kinase II (CaMKII) is activated by Angiotensi...

ORGANISM(S): Mus musculus

2015-07-01 | E-GEOD-64613 | biostudies-arrayexpress

Structures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium.

Not available

S-EPMC3675764 | biostudies-literature

Calcium-dependent signaling and kinases in apicomplexan parasites.

Not available

S-EPMC2718762 | biostudies-literature

Tissue-specific expression pattern of calcium-dependent protein kinases-related kinases (CRKs) in rice.

Not available

S-EPMC7588190 | biostudies-literature

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