flash effect - OmicsDI

Show results for

Transcriptomics (743)
Unknown (418)
Genomics (149)
Proteomics (59)
Metabolomics (52)
Other (1)

Organisms

Mus musculus (181)
Homo sapiens (145)
Rattus norvegicus (52)
Arabidopsis thaliana (38)
Caenorhabditis elegans (31)
Saccharomyces cerevisiae (31)
Drosophila melanogaster (18)
Pimephales promelas (15)
Escherichia coli (14)
Candida albicans (9)
Hordeum vulgare (7)
Danio rerio (7)
Clavispora lusitaniae (6)
Zea mays (6)
Canis lupus familiaris (6)
Brassica napus (5)
Apis mellifera (5)
Bos taurus (5)
Phaeodactylum tricornutum (4)
Chlorocebus sabaeus (4)
Mycobacterium tuberculosis (4)
Glycine max (4)
Gallus gallus (4)
Escherichia coli str. K-12 substr. MG1655 (4)
Lepeophtheirus salmonis (3)
Solenopsis invicta (3)
Oncorhynchus mykiss (3)
Escherichia coli K-12 (3)
Triticum aestivum (3)
Pseudotsuga menziesii (2)

Organisms

Mus musculus (36)
Rattus norvegicus (18)
Homo sapiens (10)
Pimephales promelas (5)
Canis lupus familiaris (3)
Atriplex lentiformis (2)
Drosophila melanogaster (2)
Caenorhabditis elegans (2)
Bos taurus (2)
Mycobacterium marinum (1)
Populus x canadensis (1)
Tribolium castaneum (1)
Callosobruchus maculatus (1)
Oncorhynchus mykiss (1)
Mus (1)
Phaseolus vulgaris (1)
feces metagenome (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (768)
ENA (107)
pride (57)
MetaboLights (52)
geo (19)
MassIVE (2)

Tissue

Cell culture (8)
Whole body (5)
Plant cell (4)
Brain (3)
Permanent cell line cell (3)
Blood (2)
Embryo (2)
Liver (2)
Adipose-derived stem cell (1)
B cell (1)
Blood cell (1)
Bone marrow stem cell (1)
Bursa copulatrix (1)
Cell suspension culture (1)
Cerebral cortex (1)
Epithelial cell (1)
Epithelium of pancreatic duct (1)
Hepatocyte (1)
Hypophysis (1)
Hypothalamus (1)
Intestine (1)
Leaf (1)
Lung (1)
Macrophage (1)
Malignant cell (1)
Mesenchymal cell (1)
Neuron (1)
Neuron apoptotic process (1)
PanIN cell (1)
T cell (1)

Disease

Normal (6)
Disease free (4)
Dermal neurofibroma (1)
Model of metabolic syndrome (1)
Cladosporium fulvum infected (1)
Mock inoculated (1)
Phytophthora capsici infected (1)
Partially decidualised (1)
Osteosarcoma (1)
Prostate cancer (1)
None (1)
Ovarian cancer (1)
Acute leukemia (1)
Alzheimer's disease (1)
Cardiovascular system disease (1)
Inflammatory bowel disease (1)
Pancreatic ductal adenocarcinoma (1)
Schizophrenia (1)

Technology Type

Mass Spectrometry (57)
Mass spectrometry (33)
Shotgun proteomics (30)
Bottom-up proteomics (14)
Mass spectrometry assay (11)
Affinity purification coupled with mass spectrometry proteomics (10)
NMR spectroscopy (7)
Data-dependent acquisition (6)
Data-independent acquisition (5)
NMR spectroscopy assay (3)
Gel-based experiment (2)
HDMSE (1)
MSE (1)
RNA mass spectrometry (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (30)
NextSeq 500 (17)
Illumina HiSeq 2500 (15)
Illumina HiSeq 2000 (14)
Illumina HiSeq 4000 (8)
ArrayWoRx Biochip Reader [Applied Precision] (6)
N/A (5)
Illumina HiSeq 1500 (4)
Agilent high resolution C scanner (3)
Illumina NovaSeq X (3)
NextSeq 550 (3)
Single nuclei were captured using the 10x Genomics Chromium Controller. (2)
Chromium Next GEM Single Cell Multiome ATAC + Gene Expression Reagent Bundle, (2)
High resolution C. scanner (2)
PacBio RS II (2)
GenePix 4000A [Axon Instruments] (2)
Axon- GenePix4000B (2)
NextSeq 2000 (2)
BGISEQ-500 (2)
10X v3 (1)
Single-Cell Extraction: For enzymatic digestion, pronase (Septomyces argeus, 1 mg/mL) was applied for 25 minutes at room temperature for P0 to P8 datasets. Cells were dissociated and triturated into a single-cell suspension in ACSF supplemented with 1% fetal calf serum (FCS) and DNase (1 µL/10 mL). Trituration was performed using three glass Pasteur pipettes of decreasing diameters. For P30 datasets, enzymatic digestion and cell dissociation were carried out using the Worthington Papain Dissociation System, following the manufacturer’s instructions. Single-Nuclei Extraction: For nuclei isolation, the Hibernate™-E Medium was removed, and 500 µL of chilled 0.1X NP40 Lysis Buffer was added. Tissue was homogenized using a Pellet Pestle (15 strokes) and incubated on ice for 5 minutes. The suspension was pipette-mixed 10 times using a wide-bore pipette tip and incubated for an additional 10 minutes on ice. Following lysis, 500 µL of chilled wash buffer was added, and the mixture was pipette-mixed 5 times using a regular-bore pipette tip. The suspension was filtered through a 30 µm cell strainer into a 50 mL tube to remove debris. The filtered suspension was transferred to a 1.5 mL tube and centrifuged at 950 × g for 10 minutes at 4°C. The supernatant was carefully removed, and the nuclei pellet was retained for downstream analysis. (1)
Agilent 2100 Bioanalyzer (Agilent Technologies); Qubit Fluorometer (Thermo Fisher Scientific); standard electrophoresis system (1)
NanoDrop spectrophotometer, Agilent 2100 Bioanalyzer (1)
10X Chromium Nuclei Isolation Kit (1)
10X Genomics reagent kit (1)
Next GEM Single Cell 3' Gel Bead kit v3.1 (1)
Chromium Nuclei Isolation kit (10x Genomics 1000493) (1)
Tiangen kit/Trizol (1)
Uterine biosy (1)
MA900, Sony (1)

Publication Date

2014 (93)
2013 (89)
2016 (73)
2010 (71)
2015 (66)
2012 (64)
2008 (60)
2011 (57)
2026 (47)
2009 (41)
2025 (32)
2024 (28)
2023 (28)
2021 (26)
2022 (25)
2007 (21)
2019 (20)
2020 (16)
2018 (12)
2017 (8)
2004 (8)
2006 (7)
2005 (6)

CHEBI ID

CHEBI:15428 (16)
CHEBI:17822 (14)
CHEBI:28044 (14)
CHEBI:18237 (13)
CHEBI:18186 (13)
CHEBI:24898 (13)
CHEBI:25017 (13)
CHEBI:16335 (13)
CHEBI:15891 (13)
CHEBI:30769 (13)
CHEBI:26271 (12)
CHEBI:25094 (12)
CHEBI:17234 (12)
CHEBI:28300 (12)
CHEBI:17754 (12)
CHEBI:27266 (12)
CHEBI:16449 (12)
CHEBI:15354 (12)
CHEBI:17368 (12)
CHEBI:22660 (11)
CHEBI:16811 (11)
CHEBI:16750 (11)
CHEBI:15741 (11)
CHEBI:6650 (11)
CHEBI:17750 (11)
CHEBI:16704 (11)
CHEBI:17596 (11)
CHEBI:22653 (10)
CHEBI:26986 (10)
CHEBI:16958 (10)

Metabolite Name

Taurine (12)
Inosine (11)
Adenosine (9)
Glycine (9)
Choline (9)
Hypoxanthine (9)
Citrulline (8)
Tyrosine (8)
Uridine (8)
Leucine (7)
Glycine (7)
Serine (7)
Proline (7)
Guanosine (7)
Adenine (7)
Phenylalanine (7)
Glucose (7)
Valine (7)
Leucine (7)
Glycerol (7)
Myo-inositol (7)
Benzoic acid (7)
Alanine (7)
Isoleucine (7)
Creatine (7)
Phosphate (6)
Methionine sulfoxide (6)
Ribose (6)
Aspartate (6)
Uridine (6)

First Public Date

2014 (21)
2026 (13)
2025 (13)
2024 (12)
2023 (11)
2019 (11)
2021 (7)
2016 (7)
2020 (4)
2022 (3)
2017 (3)
2015 (2)

Classification

bacteria (1)

Modification

Not available (1)

Study type

Transcription profiling by array (469)
RNA-seq of coding RNA (145)
ChIP-seq (35)
RNA-seq of non coding RNA (14)
Comparative genomic hybridization by array (10)
Other (10)
ChIP-chip by array (9)
Unknown experiment type (8)
RNA-seq of coding RNA from single cells (7)
Spatial transcriptomics by high-throughput sequencing (5)
High-throughput sequencing (4)
Ribo-seq (4)
Methylation profiling by high throughput sequencing (4)
RNA-seq of total RNA (4)
Plant - High-throughput sequencing (3)
Animal - High-throughput sequencing (3)
Transcription profiling by RT-PCR (3)
Single nucleus RNA sequencing (3)
MicroRNA profiling by array (3)
DNA-seq (3)
Methylation profiling by array (3)
Animal - Two-color microarray (2)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
Single-nucleus ATAC-seq (1)
GRO-seq (1)
MNase-seq (1)
One-color microarray (1)
Human - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)

Release Date

2014 (106)
2013 (97)
2010 (76)
2016 (75)
2012 (72)
2015 (71)
2022 (70)
2025 (68)
2024 (67)
2011 (66)
2008 (63)
2023 (58)
2021 (50)
2020 (47)
2009 (47)
2018 (30)
2026 (28)
2019 (28)
2017 (22)
2007 (20)
2006 (10)
2004 (7)
2005 (6)
2002 (1)
1999 (1)

Lab affiliation

Memorial Sloan Kettering Cancer Center (3)
Department of Biological Sciences, Vanderbilt University (2)
University of Pennsylvania (2)
AgResearch Ltd, Grasslands Research Centre, Palmerston North, New Zealand. (1)
Bacteriology Department, University of Wisconsin-Madison (1)
Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, P.R. China (1)
Center for Reproductive Evolution Syracuse University (1)
DZNE, Bonn, Germany (1)
Department of Biochemistry (286) Radboud University Medical Centre Radboud Institute for Molecular Life Sciences P.O. Box 9101 NL-6500 HB Nijmegen The Netherlands (1)
Department of Biochemistry and Molecular Biology; Michael Smith Laboratories; University of British Columbia (1)
Department of Biochemistry, Institute of Chemistry, University of São Paulo,São Paulo, SP, Brazil (1)
Department of Cell Biology and Physiology, Washington University in St. Louis, St. Louis, Missouri, USA (1)
Department of Chemistry University of Nebraska-Lincoln Lincoln, NE 68588 USA (1)
Department of Chemistry and Bioscience Aalborg University Denmark (1)
Department of Chemistry, Biology and Biotechnology, University of Perugia, Italy (1)
Department of Chemistry, Johns Hopkins University (1)
Department of Chemistry, University of North Carolina at Chapel Hill (1)
Department of Integrative Biology, University of California Berkeley (1)
Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, United States (1)
Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution (1)
Department of Microbiology and Immunology Department of Biomedical Genetics Department of Biostatistics and Computational Biology University of Rochester, Rochester, NY (1)
Department of Musculoskeletal and Ageing Science, Institute of Life Course and Medical Sciences, University of Liverpool, Liverpool, UK (1)
Department of Oncology, Hematology and Bone Marrow Transplantation with Section Pneumology, Hubertus Wald-Tumorzentrum, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Department of Oncology, Sidney Kimmel Comprehensive Cancer Center and Department of Pediatrics, Johns Hopkins University School of Medicine, Baltimore, MD, USA (1)
Department of Pharmacology, University of Arizona College of Medicine, Tucson (1)
Department of Pharmacology, Yale University School of Medicine, New Haven, CT, USA; Yale Cancer Biology Institute, Yale West Campus, West Haven, CT, USA; present affiliation: Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA (1)
Department of Plant Biology, Carnegie Institution for Science, Stanford, California, USA (1)
Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27514, USA (1)
Faculté de Médecine et des Sciences de la Santé Department of Immunology and Cell Biology Université de Sherbrooke (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)

Previous page
1 / 143
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 143
Next page

Sort by:

Relevance

Page size

An ambient-temperature storage and stabilization device performs comparably to flash-frozen collection for stool metabolomics in infants

BACKGROUND: Stool metabolites provide essential insights into the function of the gut microbiome. The current gold standard for storage of stool samples for metabolomics is flash-freezing at - 80 °C which can be inconvenient and expensive. Ambient temperature storage of stool is ...

2021-01-27 | MTBLS201 | MetaboLights

Systems-wide RNAi analysis of CASP8AP2 / FLASH

We have used a combination of RNAi based functional and molecular genomic approaches to investigate in detail two proteins required for the survival of CRC cells. Set1 has 22 samples, 10 siNeg controls, 6 siRNA transfections for FLASH and NUP62 each. Set2 has 67 samples, siNeg controls at timepoint:...

ORGANISM(S): Homo sapiens

2012-05-06 | E-GEOD-29405 | biostudies-arrayexpress

Effect of NAC154 transcription factor overexpression on the field grown poplar stem wood metabolome

Several xylem-associated regulatory genes have been identified that control processes associated with wood formation in poplar. Prominent among these are the NAC domain transcription factors (NACs). We evaluated the putative involvement of Populus NAC154, a co-ortholog of the Arabidopsis gene SND2, ...

2015-01-31 | MTBLS119 | MetaboLights

FLASH radiotherapy efficacy and toxicity

Evaluation of the late genotoxic effect of flash radiation therapy in mouse tissue

PRJEB86376 | ENA

The flash grab effect.

Not available

S-EPMC5047291 | biostudies-literature

FLASH-seq of human and chimpanzee single spheroid budding at different time points

We utilized FLASH-seq, a full-length bulk RNA sequencing method, to sequence single spheroids in a 96-well format by manually sorting human and chimpanzee spheroids budding at day 3 to day 6 of midgut/hindgut patterning. We would like to use this data to assess the early stages of differentiation an...

ORGANISM(S): Homo sapiens

2025-08-08 | E-MTAB-15107 | biostudies-arrayexpress

The Impacts of FLASH Radiation Therapy and Conventional Radiation Therapy on the Cognitive Abilities of Mice.

Not available

S-EPMC12754397 | biostudies-literature

Sparing effects of FLASH irradiation in patient-derived lung tissue

PRJNA1097629 | ENA

Sustained attention and the flash grab effect.

Not available

S-EPMC10893896 | biostudies-literature

Electron-beam FLASH whole brain irradiation induced a unique changes of intestinal flora.

Not available