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Unknown (137401)
Transcriptomics (2550)
Genomics (2307)
Clinical (435)
Proteomics (427)
Genomic (147)
Metabolomics (115)
Methylation profiling (67)
Other (42)
Models (9)
Multiomics (1)
Microarray (1)

Organisms

Homo sapiens (1819)
Mus musculus (652)
Drosophila melanogaster (78)
Arabidopsis thaliana (58)
Rattus norvegicus (55)
Saccharomyces cerevisiae (51)
Danio rerio (44)
Caenorhabditis elegans (36)
Sus scrofa (23)
synthetic construct (17)
Schizosaccharomyces pombe (15)
Gallus gallus (13)
Bos taurus (11)
Escherichia coli (11)
Zea mays (10)
Macaca mulatta (10)
Rhizobium leguminosarum (9)
Solanum lycopersicum (8)
Biomphalaria glabrata (5)
Pseudomonas aeruginosa (5)
Campylobacter jejuni (4)
Oryza sativa Japonica Group (4)
Pan troglodytes (4)
Staphylococcus aureus (4)
Anopheles funestus (3)
Vitis vinifera (3)
Mycobacterium tuberculosis (3)
Aedes aegypti (3)
Hordeum vulgare (3)
Neisseria gonorrhoeae (2)

Organisms

Homo sapiens (998)
Mus musculus (98)
Rattus norvegicus (11)
human gut metagenome (11)
Bacillus subtilis (7)
Saccharomyces cerevisiae (6)
Drosophila melanogaster (6)
Macaca mulatta (5)
unidentified (4)
human oral metagenome (4)
Sus scrofa (4)
Danio rerio (4)
Polistes canadensis (2)
Dysphania schraderiana (2)
Affinirhizobium gouqiense (2)
Hepatitis B virus (2)
Artemisia argyi (2)
human feces metagenome (2)
human metagenome (2)
Staphylococcus aureus (2)
gut metagenome (2)
Caenorhabditis elegans (2)
metagenome (2)
Arabidopsis thaliana (2)
Aggregatibacter actinomycetemcomitans serotype b str. SCC4092 (1)
Aggregatibacter actinomycetemcomitans serotype e str. A160 (1)
Roseovarius tolerans (1)
Aggregatibacter actinomycetemcomitans serotype c str. AAS4A (1)
Mycobacterium sp. M23085 (1)
Caldicellulosiruptor saccharolyticus (1)

Repository

biostudies-arrayexpress (2143)
ENA (1809)
geo (703)
EGA (315)
pride (295)
dbGaP (147)
MetaboLights (104)
MassIVE (86)
iProX (30)
GNPS (10)
BioModels (8)
NODE (5)
PeptideAtlas (5)
PanoramaPublic (4)
EVA (3)
jPOST (3)
GPMDB (2)
MetabolomicsWorkbench (1)
PMR (1)

Tissue

Cell culture (48)
Epithelial cell (22)
Blood serum (20)
Blood plasma (16)
Permanent cell line cell (14)
Kidney (10)
Lung (10)
Liver (8)
Brain (8)
Colon (8)
Blood (6)
Heart (6)
Others (5)
Blood cell (5)
Fibroblast (5)
HeLa cell (5)
Whole body (5)
Urine (4)
Cerebrospinal fluid (3)
Embryo (3)
Macrophage (3)
Renal glomerulus (3)
Spleen (3)
B cell (2)
Body wall muscle (2)
Blood (1)
Bone marrow (1)
Duodenal cancer (1)
Duodenum (1)
Esophageal cancer (1)

Disease

Normal (9)
Neuroblastoma (3)
Porphyria NOS (2)
Head and neck squamous cell carcinoma (2)
Glioblastoma (2)
Breast carcinoma (2)
Ovarian cancer (2)
Multiple myeloma (2)
XCGD (1)
Huntington's disease mouse model (1)
GIP-dependent Cushing's syndrome (1)
Osteosarcoma subtype fibroblastic (1)
Ovarian carcinoma (1)
Malignant testicular germ cell tumor (1)
Normal urothelium (1)
Uninfected (1)
Dengue 2 (JAM1409) infected (1)
Autoimmune disorder (1)
Not applicable (1)
Phyllodes tumor (1)
Colon cancer Dukes C (1)
Post-stasis (1)
Advanced atherosclerosis (1)
Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
Colorectal cancer recurrence-free (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Hepatitis C infected (1)
Myelolipoma (1)
Infiltrating ductal carcinoma (1)
Chronic granulomatous disease (1)

Technology Type

Mass Spectrometry (296)
Shotgun proteomics (154)
Mass spectrometry (75)
Bottom-up proteomics (50)
Data-dependent acquisition (45)
Gel-based experiment (21)
Data-independent acquisition (20)
Mass spectrometry assay (19)
SWATH MS (17)
Affinity purification coupled with mass spectrometry proteomics (16)
Illumina HiSeq 2000 (14)
NMR spectroscopy (9)
Illumina HiSeq 2500 (8)
SRM/MRM (8)
Illumina MiSeq (2)
Illumina Genome Analyzer II (2)
Illumina HT12.4 (1)
ILLUMINA, Illumina HiSeq 2500, Ion Torrent PGM, ION_TORRENT (1)
Illumina MiSeq, ILLUMINA (1)
ILLUMINA, NextSeq 500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina 450K-chip (methylation data) (1)
Illumina Genome Analyzer IIx, Illumina Genome Analyzer II (1)
Affymetrix_SNP6_raw, Illumina HT 12, Agilent ncRNA 60k (1)
Illumina Infinium 1.2M (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HumanExome-12v1_A-GenCall, zCall, GenoSNP, - Illuminus (1)
Unknown (1)
NMR spectroscopy assay (1)
ESI (1)

Instrument Platform

Illumina NovaSeq 6000 (132)
NextSeq 500 (52)
Illumina HiSeq 2500 (50)
Illumina HiSeq 4000 (50)
Illumina HiSeq 2000 (20)
NextSeq 550 (16)
NextSeq 2000 (14)
Illumina MiSeq (12)
GenePix 4000B [Axon Instruments] (8)
DNBSEQ-G400 (8)
Illumina NovaSeq X (7)
Axon- GenePix4000B (4)
BGISEQ-500 (4)
10x Chromium (3)
Illumina Genome Analyzer IIx (3)
Axon GenePix 4000B scanning hardware (3)
NA (3)
Illumina HiSeq X (3)
HiSeq X Ten (3)
Illumina HiSeq 3000 (3)
10X (2)
Octo MACS (2)
Bio-Rad CFX96 Real-time System (2)
BD LSRFortessa (2)
10x Genomics Chromium (2)
Microcentrifuge (2)
Flat panel airlift-loop reactor with a 1.7 L working volume (2)
Maxwell® 16 LEV simplyRNA Tissue kit (Promega) (2)
GeneChip Scanner 3000 7G (2)
GenePix 4000A [Axon Instruments] (2)

Publication Date

2013 (282)
2010 (279)
2015 (268)
2014 (252)
2025 (239)
2012 (233)
2011 (206)
2024 (186)
2023 (168)
2026 (164)
2022 (163)
2021 (130)
2016 (124)
2008 (116)
2020 (105)
2018 (95)
2019 (87)
2009 (86)
2007 (71)
2017 (57)
2006 (27)
2005 (27)
2004 (15)
2003 (2)

UNIPROT ID/AC

A0A024R563 (5)
A0A024R8H9 (5)
A0A024RAN2 (5)
A0A024RC46 (5)
A0A087WXI0 (5)
A0A0A0MR66 (5)
A0A0A0MSA7 (5)
A0A0C4DG89 (5)
A0AVT1 (5)
A0FGR8 (5)
A0FGR8-2 (5)
A0FGR8-6 (5)
A0MZ66 (5)
A2BFH1 (5)
A3KN83 (5)
A4D110 (5)
P11972 (1)
P00546 (1)
P21268 (1)
P12630 (1)
P13574 (1)
Q03497 (1)
P23561 (1)
P06784 (1)
P32917 (1)
P16892 (1)
P08539 (1)
P06842 (1)
P18851 (1)
P18852 (1)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:15428 (27)
CHEBI:30769 (25)
CHEBI:16737 (24)
CHEBI:16449 (22)
CHEBI:18257 (20)
CHEBI:25017 (19)
CHEBI:18237 (19)
CHEBI:15741 (19)
CHEBI:15756 (19)
CHEBI:27266 (18)
CHEBI:17295 (18)
CHEBI:17822 (17)
CHEBI:26271 (17)
CHEBI:26986 (17)
CHEBI:28300 (17)
CHEBI:15891 (17)
CHEBI:15354 (17)
CHEBI:17895 (17)
CHEBI:16828 (17)
CHEBI:18186 (16)
CHEBI:28044 (16)
CHEBI:28842 (16)
CHEBI:16919 (16)
CHEBI:17234 (15)
CHEBI:24898 (15)
CHEBI:16411 (15)
CHEBI:15843 (15)
CHEBI:16414 (15)
CHEBI:17191 (15)
CHEBI:33282 (1)

Metabolite Name

Choline (17)
Creatinine (15)
L-Valine (14)
L-Phenylalanine (14)
L-Histidine (13)
Succinic acid (13)
Palmitic acid (13)
Linoleic acid (13)
L-Tryptophan (13)
Creatine (13)
L-Tyrosine (13)
L-Proline (12)
L-Lysine (12)
Dodecanoic acid (12)
L-Carnitine (12)
L-Methionine (12)
Glycine (11)
Betaine (11)
Taurine (11)
Deoxycholic acid (11)
Spermidine (11)
Indoleacrylic acid (11)
Uric acid (11)
Glycerophosphocholine (11)
L-Isoleucine (11)
Hypoxanthine (11)
7-Methylguanine (10)
Ornithine (10)
L-Threonine (10)
Serotonin (10)

First Public Date

2014 (224)
2024 (217)
2025 (212)
2026 (180)
2022 (171)
2023 (147)
2021 (109)
2020 (108)
2019 (101)
2018 (91)
2017 (69)
2015 (69)
2013 (65)
2016 (39)
2011 (4)
2012 (2)
2010 (1)

Modelling Approach

Ordinary differential equation model (5)
Regression method (1)
Computational model (1)
Metabolic network (1)

Study status

Completed (164)
Recruiting (107)
Not yet recruiting (54)
Not provided (43)
Active, not recruiting (32)
Terminated (17)
Withdrawn (7)
Enrolling by invitation (5)
Ongoing (3)
Suspended (2)
Other (1)

Lab affiliation

MDC (5)
1Clinic of Operative Dentistry, Periodontology and Preventive Dentistry, University Hospital, Saarland University, Kirrberger Strasse building 73, 66421 Homburg/Saar, Germany (4)
Bioplatforms Australia (3)
Executive Science Officer, BioFrontiers InstituteDistinguished ProfessorProfessor, Howard Hughes Medical Institute MOLECULAR CELLULAR AND DEVELOPMENTAL BIOLOGY CU DENVER SCHOOL OF MEDICINE (3)
Institute for Genetics, CECAD Research Center, University of Cologne, Joseph-Stelzmann-Straße 26, 50931 Cologne, Germany (3)
Professor, Microbiology, Immunology, and Pathology Mycobacteria Research Laboratories Scientific Director, Rocky Mountain Regional Biocontainment Laboratory Editor-in-chief, BMC Mycobacteria (3)
Redox Metabolism, Institute for Biochemistry, University of Cologne (3)
Chromatin Biology Laboratory, Cancer Epigenetics and Biology Program (PEBC), Bellvitge Biomedical Research Institute (IDIBELL), L’Hospitalet de Llobregat, Barcelona, Spain. Chromatin Biology Laboratory, Josep Carreras Leukaemia Research Institute (IJC), Badalona, Spain. (2)
Clinic of Operative Dentistry, Periodontology and Preventive Dentistry, University Hospital, Saarland University, Kirrberger Strasse building 73, 66421 Homburg/Saar, Germany (2)
Department of Biochemistry and Molecular Biology Indiana University School of Medicine Indianapolis, IN (2)
Department of Human Genetics and Biochemistry Sackler School of Medicine Tel Aviv University Tel-Aviv, Israel 69978 (2)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 65 Stockholm, Sweden (2)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (2)
Department of Structural Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP) (2)
III. Department of Medicine, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (2)
Institut Pasteur Unité des Interactions Bactéries-Cellules, Inserm U604, INRA USC2020 25 rue du Dr. Roux 75015 Paris France (2)
Institute for Biochemistry, University of Cologne (2)
Institute of Lung Biology and Disease and Comprehensive Pneumology Center, Helmholtz Zentrum München, Member of the German Center for Lung Research (DZL), Munich, German (2)
Instituto de Parasitología y Biomedicina "López - Neyra", CSIC Departamento de Biología Celular e Inmunología Parque Tecnológico de Ciencias de la Salud, Avda. del Conocimiento, s/n 18016, Granada-Spain (2)
Laboratory of Biotechnology of Reproduction, Institute for Animal Science and Technology (ICTA), Universitat Politècnica de València, 46022 Valencia, Spain (2)
Max Delbruck Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany (2)
Nanoparticle Systems Engineering Laboratory Department of Mechanical and Process Engineering ETH Zurich, Switzerland (2)
Proteome Dynamics, Max Delbrück Center for Molecular Medicine, Robert-Rössle-Str. 10, D-13092 Berlin, Germany Charité-Universitätsmedizin Berlin, 10117 Berlin, Germany (2)
1,College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, China 2,Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling, Shaanxi 712100, China (1)
1. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
1. Graduate Institute of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan 33302, Taiwan. 2. Molecular Medicine Research Center, Chang Gung University, Taoyuan 33302, Taiwan. 3. Department of Otolaryngology-Head and Neck Surgery, Chang Gung Memorial Hospital, Linkou 33305, Taiwan. 4. Research Center for Food and Cosmetic Safety, College of Human Ecology, Chang Gung University of Science and Technology, Taoyuan 33302, Taiwan. (1)
1. Institute of Physiology, University Clinics and Faculty of Medicine. University of Cologne, Germany 2. Center for Molecular Medicine (CMMC), University of Cologne. Germany 3. Institute of Biochemistry and Molecular Biology, University Clinics and Faculty of Medicine, Heinrich-Heine University Düsseldorf, Germany (1)
1Department of Microbiology and Molecular Medicine, Faculty of Medicine/Centre Médical Universitaire, University of Geneva, 1211 Genève Switzerland (1)
Affiliation CECAD Research Center, University Hospital Cologne (1)
Affiliation: Center for Physiology & CECAD Research Center, Faculty of Medicine, University of Cologne (1)

Keyword

Colonoscopy (13)
Irinotecan (13)
Oxaliplatin (10)
Colorectal (8)
Screening (8)
Bevacizumab (6)
Fluorouracil (6)
Diet (5)
Capecitabine (5)
Leucovorin (5)
Cyclophosphamide (4)
Levoleucovorin (4)
Cetuximab (4)
Rehabilitation (3)
Mass Screening (3)
Sigmoidoscopy (3)
Colorectal cancer screening (3)
MCRC (3)
Metastatic (3)
Adenoma (3)
Stage II rectal cancer (3)
Stage III rectal cancer (3)
Chronicization, radiation-induced acute intestinal injury, Rectal cancer, NCRT, TME (2)
Complex intervention (2)
SMART System (2)
Population Surveillance (2)
Health Behavior (2)
Natural History (2)
Peritoneal Metastasis (2)
Aldesleukin (2)

IsPrivate

False (8)

Submitter Keywords

Ersilia (2)
Machine Learning Model (2)
FAIR-AIML (1)
Immuno-oncology (1)

Classification

bacteria (16)
viruses (7)
protozoa (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (2)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (1195)
RNA-seq of coding RNA (243)
RNA-seq of coding RNA from single cells (165)
Comparative genomic hybridization by array (81)
ChIP-chip by tiling array (66)
ChIP-seq (50)
Unknown experiment type (43)
Methylation profiling by array (43)
RNA-seq of non coding RNA (37)
Other (26)
Transcription profiling by tiling array (25)
RNA-seq of total RNA (16)
Genotyping by array (15)
DNA-seq (13)
Animal - Single-cell sequencing (10)
Animal - High-throughput sequencing (10)
Transcription profiling by RT-PCR (9)
ATAC-seq (9)
Transcription profiling by SAGE (7)
Methylation profiling by high throughput sequencing (7)
MicroRNA profiling by array (6)
Human - Single-cell sequencing (5)
Human - High-throughput sequencing (5)
High-throughput sequencing (5)
ScATAC-seq (5)
Baseline (4)
Differential (4)
ChIP-chip by array (4)
Single nucleus RNA sequencing (4)
Proteomic profiling by array (3)

Release Date

2022 (19368)
2025 (18016)
2023 (17116)
2021 (15795)
2024 (14868)
2020 (11690)
2019 (8797)
2018 (7074)
2017 (5703)
2016 (4496)
2015 (3713)
2014 (2997)
2026 (2551)
2013 (1962)
2012 (1499)
2011 (1163)
2010 (1033)
2009 (647)
2008 (424)
2007 (234)
2006 (134)
2005 (103)
2004 (65)
2003 (42)
2001 (15)
2002 (14)
2000 (11)
1999 (8)
1998 (5)
1996 (1)

Location

United States (75)
Australia (68)
United Kingdom (43)
China (35)
Germany (33)
France (29)
Netherlands (28)
Spain (22)
Japan (17)
Italy (17)
Belgium (16)
Denmark (12)
Sweden (12)
New Zealand (11)
India (10)
Canada (9)
Brazil (9)
Iran (7)
Taiwan (7)
Romania (7)
Greece (6)
Poland (6)
Hungary (6)
South Korea (6)
Czechia (6)
Norway (5)
Bulgaria (5)
Russia (5)
Austria (5)
Latvia (4)

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Health Professional Follow-Up Study

PRJNA736488 | ENA

Health Professional Follow-Up Study

PRJNA736489 | ENA

Health Professionals Follow-up Study (HPFS)

PRJNA492370 | ENA

Epigenetic regulation in the elderly over time

DNA methylation levels in whole blood measured over a ten years follow up in an elderly birth cohort of 86 samples For each sample, whole blood was drawn in year 1997 and in year 2007 Follow-up design: Same participant was measured over time in 1997 and 2007

ORGANISM(S): Homo sapiens

2016-09-02 | E-GEOD-73115 | biostudies-arrayexpress

Follow-up-IBS

Follow-up of faecal microbiota in IBS patients

PRJEB3227 | ENA

Sarcoidosis + Follow-up study

Sarcoidosis + Follow-up 6 month after Keywords = sarcoidosis Keywords = follow-up Keywords: other

ORGANISM(S): Homo sapiens

2005-01-18 | GSE1907 | GEO

Vaginal microbiome of PCOS women for 6 month follow-up

Vaginal microbiome of PCOS women for 6 month follow-up Genome sequencing and assembly

PRJNA895690 | ENA

A Follow-up of dietary interention to modulate gut microbiota to alleviate human type 2 diabetes

Follow up of gut microbitoa targeted interventioon

PRJEB52732 | ENA

Transcription profiling of human breast carcinoma tissues representing 930 patients with 17.4 years mean follow-up, basal cytokeratin expression was associated with decreased disease-specific survival

Expression profiling studies have classified breast carcinomas into luminal, normal breast-like, HER2 expressing and basal-like groups, with the latter two associated with poor outcomes. This study's objectives were to define an immunohistochemical profile that identifies basal-like tumors, to ident...

ORGANISM(S): Homo sapiens

2006-09-15 | E-SMDB-2863 | biostudies-arrayexpress

Atrial Fibrillation Follow-Up Investigation of Rhythm Management (AFFIRM-BioLINCC)

PRJNA1453010 | ENA