fossil - OmicsDI

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Unknown (5675)
Genomics (315)
Proteomics (63)
Transcriptomics (36)
Metabolomics (1)

Organisms

Schizophyllum commune H4-8 (56)
Mycobacterium tuberculosis SP7 (56)
Mus musculus (4)
Homo sapiens (4)
Xenopus laevis (3)
Saccharomyces cerevisiae (2)
Dunaliella tertiolecta (2)
Synechocystis sp. PCC 6803 (2)
Danio rerio (2)
Hymenochirus boettgeri (1)
Casuarina glauca (1)
Paraspadella gotoi (1)
Clostridium acetobutylicum ATCC 824 (1)
Thlaspi arvense (1)
Botryococcus braunii (1)
Eubacterium limosum (1)
Neolecta irregularis (1)
Novosphingobium aromaticivorans DSM 12444 (1)
Acipenser dabryanus (1)
Clostridium autoethanogenum (1)
Corynebacterium glutamicum ATCC 13032 (1)
Ceratopteris richardii (1)
Paracentrotus lividus (1)
Corynebacterium glutamicum (1)
Rhodotorula toruloides (1)
Leucoraja erinaceus (1)
Caenorhabditis elegans (1)
Salmonella sp. WT (1)
Microcystis aeruginosa (1)
Escherichia coli (1)

Organisms

fossil metagenome (27)
Equus ovodovi (5)
Ginkgo biloba (4)
Homo sapiens (4)
Diceros bicornis minor (3)
Sarcoramphus papa (3)
Saccharomyces cerevisiae (3)
Triops cancriformis (2)
hydrocarbon metagenome (2)
wastewater metagenome (2)
soil metagenome (2)
Sphingomonas phyllosphaerae 5.2 (1)
Sphingomonas melonis DAPP-PG 224 (1)
Platanus occidentalis (1)
Speleorchestes sp. AD1671 (1)
Osperalycus tenerphagus (1)
Sphingomonas melonis C3 (1)
Halomonas sp. ML-15 (1)
Nigidius sinicus (1)
Myxocyprinus asiaticus (1)
Sphingomonas melonis FR1 (1)
Sphingomonas phyllosphaerae FA2 (1)
Geocapromys ingrahami (1)
Symphonia globulifera (1)
Hippotragus leucophaeus (1)
Chroococcidiopsis sp. PCC 8201 (1)
Aspergillus tamarii (1)
Clostridium autoethanogenum (1)
Sciadopitys verticillata (1)
Sequoia sempervirens (1)

Repository

ENA (315)
pride (56)
geo (22)
biostudies-arrayexpress (14)
MassIVE (4)
iProX (2)
MetaboLights (1)
PanoramaPublic (1)

Tissue

Tooth enamel (15)
Skeleton (10)
Enamel (5)
Bone (5)
Dentin (3)
Eggshell (2)
Tooth enamel organ (2)
Tooth (2)
Skin (2)
Brain (2)
Cell culture (2)
Otolith organ (1)
Enamel organ (1)
Cranium (1)
Long bone (1)
Growth phase culture (1)
Urine (1)
Bone marrow (1)
Macrophage (1)
Photosynthetic cell (1)
Permanent cell line cell (1)

Disease

Wounds and Injuries (10)
Disease free (4)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (26)
Bottom-up proteomics (23)
Data-dependent acquisition (10)
Data-independent acquisition (3)
SRM/MRM (2)
Mass spectrometry (1)
Metaproteomics (1)
SWATH MS (1)
Gel-based experiment (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Q Exactive HF (2)
Illumina NovaSeq X (1)
LTQ Orbitrap Elite (1)
Orbitrap Exploris 480 (1)
Q Exactive HF-X (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)

Publication Date

2025 (19)
2020 (14)
2026 (12)
2024 (10)
2015 (5)
2023 (5)
2021 (5)
2019 (5)
2016 (4)
2013 (4)
2022 (3)
2018 (3)
2009 (3)
2012 (2)
2011 (2)
2010 (1)
2008 (1)
2017 (1)

Metabolite Name

TG 50:2; TG(16:0/16:1/18:1) (1)
DG 44:12; DG(22:6/22:6) (1)
DG 42:10; DG(20:4/22:6) (1)
DG 40:6; DG(18:2/22:4) (1)
DG 40:7; DG(18:1/22:6) (1)
DG 38:4; DG(18:2/20:2) (1)
DG 38:6; DG(16:0/22:6) (1)
DG 38:7; DG(18:2/20:5) (1)
DG 36:2; DG(18:0/18:2) (1)
DG 36:3; DG(18:1/18:2) (1)
Cer[NS] 32:1; Cer[NS](d18:1/14:0) (1)
Acylcarnitine 22:5 (1)
7.alpha.-Hydroxy-4-cholesten-3-one (1)
Acylcarnitine 16:0 (1)
2-Arachidonyl glycerol ether (1)
Gibberellin A64 (1)
L-Glutathione, reduced (1)
Acylcarnitine 4:0 (1)
Methyl nonyl ketone (1)
PE 34:2; PE(16:0/18:2) (1)
Citracridone I (1)
(?¡À)-Tryptophan (1)
1-(1Z-Octadecenyl)-2-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-sn-glycero-3-phosphoethanolamine (1)
NG,NG-Dimethyl-L-arginine (1)
Tyr-Pro (1)
Glu-Asn (1)
His-Ile (1)
Val-Pro (1)
Indole-3-carboxyaldehyde (1)
Trp-Pro (1)

First Public Date

2022 (37)
2026 (34)
2024 (34)
2018 (26)
2013 (25)
2019 (24)
2023 (23)
2021 (23)
2025 (22)
2014 (17)
2020 (16)
2017 (15)
2016 (10)
2015 (8)
2012 (1)

Classification

bacteria (5)
fungi (2)
viruses (1)

Modification

Not available (3)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (6)
Genotyping by array (1)

Release Date

2022 (589)
2023 (561)
2025 (522)
2021 (481)
2020 (434)
2024 (424)
2019 (421)
2018 (388)
2017 (342)
2016 (297)
2015 (266)
2014 (181)
2013 (142)
2012 (111)
2011 (101)
2026 (75)
2010 (69)
2007 (59)
2009 (54)
2008 (47)
2006 (43)
2005 (29)
2004 (14)
2003 (9)
2002 (9)
2001 (7)
1999 (7)
1998 (3)
2000 (2)
1997 (2)

Lab affiliation

Department of Ecology & Evolutionary Biology, University of California, Los Angeles, CA (8)
Signal Transduction (3)
Head of Scientific Archeology Unit, Weizmann Institute of Science (2)
Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA (2)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (2)
Department of Geosciences, Princeton University (1)
University of California, Los Angeles, USA (1)
Department of Electrical Engineering and Electronics University of Liverpool Liverpool (1)
PRBB, Institute of Evolutionary Biology (UPF-CSIC), Dr. Aiguader 88, 8003 Barcelona, Spain Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010, Barcelona, Spain Centro Nacional de Análisis Genómico (CNAG), Baldiri i Reixac 4, 08028 Barcelona, Spain Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona Edifici ICTA-ICP, c/ Columnes s/n, 08193 Cerdanyola del Vallès, Barcelona, Spain (1)
Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences; College of Earth and Planetary Sciences, University of Chinese Academy of Sciences; Key Research Base on Paleolithic Human Evolution and Paleogenetics (IVPP), SACH (1)
1 SaBio, Instituto de Investigación en Recursos Cinegéticos (IREC), Consejo Superior de Investigaciones Científicas (CSIC), Universidad de Castilla-La Mancha (UCLM)-Junta de Comunidades de Castilla-La Mancha (JCCM), Ronda de Toledo 12, 13005 Ciudad Real, Spain (1)
Section for Evolutionary Genomics, GLOBE Institute, University of Copenhagen, Copenhagen, Denmark (1)
Deputy Head of Novo Nordisk Foundation Center for Protein Research (CPR) at University of Copenhagen and Professor at University of Copenhagen (1)
Department of Cultural Heritage, University of Bologna (1)
Professor at the University of Copenhagen and Deputy Head of Novo Nordisk Foundation Center for Protein Research (CPR) at University of Copenhagen. (1)
SaBio, Instituto de Investigación en Recursos Cinegéticos (IREC), Consejo Superior de Investigaciones Científicas (CSIC), Universidad de Castilla-La Mancha (UCLM)-Junta de Comunidades de Castilla-La Mancha (JCCM), Ronda de Toledo 12, 13005 Ciudad Real, Spain. (1)
Lundbeck Foundation GeoGenetics Centre, Natural History Museum of Denmark, University of Copenhagen, Denmark (1)
Dept. of Biochemistry and Molecular Genetics, University of Colorado-Denver: Anschutz Medical Campus, Aurora, CO (1)
Associate Professor and Head of Discovery Proteomics Facility (1)
Department of Geosciences, Princeton University, Princeton, USA, 09544 (1)
BioArCh, University of York, United Kingdom (1)
Department of Life Sciences and Systems Biology University of Turin Italy (1)
Molecular Cell Biolody, Weizmann Institute of Science. (1)
Laboratoire de Spectrométrie de Masse Bio-Organique (LSMBO), IPHC,UMR 7178, Université de Strasbourg, CNRS, Strasbourg, France (1)
Institut de Biologia Evolutiva (Universitat Pompeu Fabra - CSIC); Dr. Aiguader 88, ES-08003, Barcelona (1)
Department of Molecular Oncology, BC Cancer (1)
Associate Professor, Biosciences and Bioengineering Department, IIT Bombay (1)
Manchester Institute of Biotechnology (1)
SaBio, Instituto de Investigación en Recursos Cinegéticos (IREC), Consejo Superior de Investigaciones Científicas (CSIC), Universidad de Castilla-La Mancha (UCLM)-Junta de Comunidades de Castilla-La Mancha (JCCM), Ronda de Toledo 12, 13005 Ciudad Real, Spain (1)
ISSCOR / UCSD (1)

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fossil metagenome

Ursus spelaeus fossil metagenome

PRJNA19671 | ENA

First paleoproteome study of fossil fish otoliths and the pristine preservation of the biomineral crystal host

Otoliths are calcium carbonate components of the stato-acoustical organ of teleost fish responsible for hearing and maintenance of their body balance. The formation of modern fish otoliths, their morphology, and the selection of calcium carbonate polymorphs is influenced by complex insoluble collage...

ORGANISM(S): Phycis phycis

2023-03-03 | PXD036742 | Pride

Paleoproteomics in fossil amber arthropods

Paleoproteomics is the proteomics analysis of ancient proteins, which may be better preserved than DNA in fossil inclusions and particularly in amber fossilized tree resin. However, only yeast proteins have been previously suggested as identified by paleoproteomics analysis conducted in fossil amber...

ORGANISM(S): fossil metagenome

2026-03-23 | PXD066794 | Pride

Amber arthropod evolution fossil paleontology paleoproteomics

fossil metagenome

fossil metagenome Raw sequence reads

PRJNA397531 | ENA

Paleoproteomics characterization of fossil holobiont in acari-host-parasite interactions

Paleoproteomics approaches the study of proteins by proteomics analysis in fossil samples. Recently, a protocol was developed and validated for paleoproteomics characterization of fossil arthropod parasitiformes in amber inclusions. In this study, the paleoproteomics approach was applied to arthropo...

ORGANISM(S): fossil metagenome

2026-03-23 | PXD064361 | Pride

Amber bird arachnid fossil mite paleoproteomics parasitic nematode

Modern and Fossil Coral Skeletal Proteomes - Fossil Insoluble GluC

Here we report the first recovery, sequencing, and identification of fossil biomineral proteins from a Pleistocene invertebrate. Fossils of the Caribbean stony coral Orbicella annularis retain total hydrolyzable amino acids of a similar composition to extracts from modern O. annularis skeletons and ...