gene-engineering

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Organisms

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Instrument Platform

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NA (8)
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UNIPROT ID/AC

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ENSEMBL ID

ENSG00000104432 (1)
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CHEBI ID

CHEBI:15428 (55)
CHEBI:16865 (50)
CHEBI:17368 (50)
CHEBI:17895 (49)
CHEBI:17295 (49)
CHEBI:16414 (48)
CHEBI:16857 (48)
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CHEBI:28997 (41)
CHEBI:17172 (41)

Metabolite Name

Glycine (9)
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Modelling Approach

Constraint-based model (35)
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Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (4)
Department of Biosciences and Bioengineering, IIT Bombay, Mumbai 400076, India (2)
Department of Modeling of Biological Processes COS, Heidelberg University (2)
Shanghai Stomatological Hospital & School of Stomatology, State Key Lab of Genetic Engineering, MOE Engineering Research Center of Gene Technology, Shanghai Engineering Research Center of Industrial Microorganisms, School of Life Sciences, Fudan University (2)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (2)
Wallenberg Center for Molecular Medicine Department of Biomedical and Clinical Sciences Linköping University, Linköping Sweden (1)
Principal Investigator „Stem Cell Metabolism“ Group Department of General Pediatrics, Neonatology, and Pediatric Cardiology University Clinic Düsseldorf (UKD), Heinrich Heine University (HHU) Moorenstraße 5, 40225 Düsseldorf, Germany Building 13.41, Level 3, Room 29 (1)
Molecular Biology and Biotechnology, University of Sheffield, UK (1)
Dept. of Medical Biochemistry and Cell Biology Institute of Biomedicine The Sahlgrenska Academy at the University of Gothenburg SWEDEN (1)
The Australian Wine Research Insistute (1)
biOMICS Mass Spectrometry Facility Department of Biomedical Science Centre for Membrane Interactions and Dynamics (CMIAD) E-04, Florey building Firth Court, Western Bank The University of Sheffield Sheffield S10 2TN United Kingdom (1)
Head of Genomics Core Facility EMBL Scientific Core Facilities, Services & Technology Unit Meyerhofstr. 1 D-69117 Heidelberg Germany (1)
National Bioenergy Center (1)
Université de Sherbrooke, Département de biologie 2500 boul. de l'Université, Sherbrooke (Québec), Canada J1K 2R1 (1)
1. Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA, USA. 2. Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA. (1)
LSC-EMBL Partnership Institute for Genome Editing Technologies, Life Sciences Center, Vilnius University, Saulėtekio al. 7, 10257 Vilnius, Lithuania (1)
Center of Growth Metabolism and Aging, College of Life Sciences, Sichuan University, Chengdu, China. (1)
Molecular Systems Biology (MoSys), Functional and Evolutionary Ecology, University of Vienna, Vienna, Austria (1)
1.Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. 2.Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. (1)
Northeast forestry university (1)
Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA Department of Biochemistry and Biophysics, The University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
Departement of Integrative Medical Biology, Umeå University, SWEDEN (1)
Univeristy of Oxford (1)
ERA Chair in Gas Fermentation Technologies, Institute of Technology, University of Tartu (1)
Department of Chemistry, University of York (1)
BioGipuzkoa Health Research Institute, Stem Cells & Aging Group, Donostia-San Sebastián, 20014, Spain; Donostia University Hospital, Advanced Therapies Unit, Donostia-San Sebastián, 20014, Spain. (1)
ValgepeaLab, Institute of Bioengineering, University of Tartu (1)
Biological Mass Spectrometry Lab,Department of Translational Medicine (DiMeT),Center for Translational Research on Autoimmune & Allergic Diseases - CAAD, University of Piemonte Orientale, Novara (NO),Italy. (1)
Laboratory of Synthetic Microbiology School of Chemical Engineering & Technology Tianjin University, Tianjin 300072, P. R. China (1)
Max Delbrueck Center for Molecular Medicine (MDC), Berlin, Germany (1)

IsPrivate

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Model Flag

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Submitter Keywords

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Oncology (1)
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Classification

bacteria (41)
fungi (8)
viruses (6)
protozoa (2)

Study type

Transcription profiling by array (9425)
RNA-seq of coding RNA (1543)
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Comparative genomic hybridization by array (213)
Unknown experiment type (163)
RNA-seq of non coding RNA (162)
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Transcription profiling of human fibroblasts grown in petri dishes vs. attached to a tissue engineering scaffold sampled at 7 timepoints.

A goal of tissue engineering is to produce a scaffold material that will guide cells to differentiate and regenerate functional replacement tissue at the site of injury. Little is known about how cells respond on a molecular level to tissue engineering scaffold materials. In this work we used oligon...

ORGANISM(S): Homo sapiens

2007-10-26 | E-GEOD-6432 | biostudies-arrayexpress

Transcription profiling of human fibroblast IMR-90 cells tissue culture polystyrene time series

IMR-90 Human Fibroblasts were seeded onto TCPS dishes. mRNA was isolated at 1, 2, 4, 8, 12, 24, 48 and 96 hours. This time course was used as a control for gene expression studies on collagen/chondroitin sulfate tissue engineering scaffold materials using the same cell line.

ORGANISM(S): Homo sapiens

2008-06-12 | E-GEOD-410 | biostudies-arrayexpress

Transcription profiling time series of the growth of human IMR-90 cells seeded on a collagen/chondroitin sulfate tissue engineering scaffold

A series of chips with some repeated measurments. Each chip represents a pool of 4 collagen/chondroitin sulfate tissue engineering scaffold meshes seeded with 1 x 10^6 IMR-90 Human Fibroblasts. mRNA was isolated at 30 minutes, 1, 2, 4, 8, 12, 24, 48, and 72 hours after seeding.

ORGANISM(S): Homo sapiens

2007-12-13 | E-GEOD-409 | biostudies-arrayexpress

Expression data from patient-derived pancreatic cancer organoids with gene engineering

PRJNA1096329 | ENA

Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering

PRJNA990786 | ENA

Spatiotemporal hepatocyte heterogeneity impacts in vivo gene engineering

PRJNA1258785 | ENA

JMJD3 and UTX as Key Targets for Gene-Modified Mesenchymal Stem Cell Therapy in Cartilage Tissue Engineering

PRJNA1295484 | ENA

A flexible, modular and versatile functional part assembly toolkit for gene cluster engineering in Streptomyces.

Not available