i/r - OmicsDI

Show results for

Unknown (81917)
Transcriptomics (12906)
Proteomics (2955)
Genomics (2515)
Metabolomics (512)
Models (89)
Other (36)
Multiomics (23)
Genomic (20)
Methylation profiling (7)
Clinical (3)

Organisms

Homo sapiens (6831)
Mus musculus (3609)
Drosophila melanogaster (968)
Arabidopsis thaliana (857)
Rattus norvegicus (588)
Saccharomyces cerevisiae (355)
Caenorhabditis elegans (297)
Escherichia coli (130)
Danio rerio (126)
Bos taurus (106)
Schizosaccharomyces pombe (99)
Sus scrofa (93)
Gallus gallus (87)
Candida albicans (78)
Thermus thermophilus HB8 (71)
Oryza sativa (67)
Hordeum vulgare (56)
Mycobacterium tuberculosis (50)
Trypanosoma brucei (41)
Ovis aries (23)
Severe acute respiratory syndrome coronavirus 2 (17)
Oryctolagus cuniculus (8)
cellular organisms (6)
Arabidopsis (3)
Mus sp. (2)
Rhodotorula toruloides (2)
Bordetella pertussis (1)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter thermautotrophicus str. Delta H (1)

Organisms

Mus musculus (208)
Homo sapiens (199)
Rattus norvegicus (41)
Saccharomyces cerevisiae (14)
Arabidopsis thaliana (10)
Ralstonia solanacearum (6)
Drosophila melanogaster (5)
Escherichia coli str. K-12 substr. MG1655 (4)
Ralstonia pseudosolanacearum (4)
Sus scrofa (4)
Marmota monax (3)
Ruditapes philippinarum (2)
unidentified (2)
synthetic construct (2)
Caenorhabditis elegans (2)
Listeria monocytogenes (2)
Rickettsia australis str. Phillips (1)
Thiobacillus denitrificans ATCC 25259 (1)
Pantoea ananatis LMG 2665 (1)
Agrobacterium fabrum str. C58 (1)
Ixodes scapularis (1)
Ornithobacterium rhinotracheale (1)
Escherichia coli str. K-12 substr. W3110 (1)
Melitaea cinxia (1)
Bacteroides fragilis NCTC 9343 (1)
Haloferax volcanii DS2 (1)
Thlaspi arvense (1)
Rhinogobio ventralis (1)
Rhodopseudomonas palustris (1)
Ralstonia solanacearum OE1-1 (1)

Repository

biostudies-arrayexpress (13699)
pride (2219)
EGA (800)
ENA (714)
MetaboLights (451)
MassIVE (425)
geo (331)
jPOST (123)
BioModels (80)
iProX (63)
PAXDB (35)
MetabolomicsWorkbench (34)
GNPS (27)
PeptideAtlas (27)
PanoramaPublic (26)
dbGaP (20)
GPMDB (14)
Cell Collective (6)
EVA (6)
FAIRDOMHub (3)
LINCS (1)
NODE (1)

Tissue

Cell culture (426)
Epithelial cell (119)
Brain (105)
Permanent cell line cell (71)
Blood (69)
Blood plasma (62)
Liver (61)
T cell (60)
Heart (53)
Fibroblast (52)
Lung (51)
Cell suspension culture (45)
Plant cell (42)
Blood (14)
Others (13)
Feces (6)
Urine (4)
Plasma Non-glyco (3)
Bacterial cells (2)
Cultured cells (2)
Macrophages (2)
Cecum (1)
Hep G2 cells (1)
IPSC cells (1)
Liver (1)
Plant (1)
Plasmodium cells (1)
Uterus (1)
Prostate (1)
Brain (1)

Disease

Normal (81)
Breast cancer (50)
Colon cancer (39)
Melanoma (27)
Alzheimer's disease (23)
COVID-19 (19)
Neuroblastoma (14)
Glioblastoma (13)
Adenocarcinoma (11)
Osteosarcoma (10)
Chronic lymphocytic leukemia (9)
Colorectal cancer (7)
Prostate cancer (7)
Colorectal adenocarcinoma (6)
Rheumatoid arthritis (5)
Colon adenocarcinoma (5)
Breast carcinoma (5)
Breast adenocarcinoma (4)
Cancer (4)
Reference (4)
Acute myeloid leukemia (4)
Primary tumor (3)
Colorectal carcinoma (3)
Chronic myelogenous leukemia (3)
Acute promyelocytic leukemia (3)
Carcinoma (3)
Wilms tumour (3)
Diabetes mellitus (2)
B-cell chronic lymphocytic leukemia (2)
Pertussis (1)

Technology Type

Illumina HiSeq 2000 (25)
Illumina 15K (8)
Illumina Genome Analyzer II (6)
Illumina HiSeq 2500 (5)
Illumina HiSeq 2500, ILLUMINA (4)
Illumina HiSeq 2500, Illumina HiSeq 2000 (3)
Illumina MiSeq (3)
ILLUMINA, Illumina HiSeq 2000 (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (2)
Unknown (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
AB SOLiD System 3.0 (1)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
ABI_SOLID, Illumina HiSeq 2000, Illumina 450K, AB 5500xl Genetic Analyzer, AB 5500 Genetic Analyzer, ILLUMINA (1)
Affymetrix 500K, unknown (1)
Affymetrix 6.0 (1)
Affymetrix_250K(Nsp) - gtype (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Complete Genomics (COMPLETE_GENOMICS) (1)
HumanOmniExpress-12 v1.1 BeadChip-GenCall (1)
ILLUMINA, Illumina Genome Analyzer IIx, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2500 (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten (1)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
ILLUMINA, NextSeq 500 (1)
Illumina (various), Illumina (Various) (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)

Instrument Platform

Illumina NovaSeq 6000 (292)
NextSeq 500 (194)
Illumina HiSeq 2500 (167)
Illumina HiSeq 2000 (158)
Illumina HiSeq 4000 (151)
NextSeq 550 (50)
NextSeq 2000 (38)
Illumina MiSeq (31)
Scanning hardware (29)
Axon- GenePix4000B (26)
Axon GenePix 4000B scanning hardware (23)
Illumina NovaSeq X (20)
GenePix 4000B [Axon Instruments] (19)
GenePix 4000A [Axon Instruments] (18)
Illumina HiSeq 1500 (18)
Illumina HiSeq 3000 (18)
Axon GenePix 4000A scanning hardware (17)
Illumina Genome Analyzer IIx (16)
Illumina Genome Analyzer II (15)
Affymetrix Fluidics Station 400 (12)
ScanArray 5000 [PerkinElmer] (11)
418 [Affymetrix] (11)
G2565BA DNA microarray scanner [Agilent] (11)
ScanArray 4000 [PerkinElmer] (10)
ScanArray Express HT (10)
N/A (10)
Illumina HiSeq 1000 (10)
BGISEQ-500 (10)
Variable Atmosphere Incubator (9)
ScanArray scanning hardware (8)

Publication Date

2013 (1831)
2010 (1760)
2011 (1456)
2014 (1360)
2012 (1308)
2015 (1299)
2008 (878)
2016 (833)
2009 (711)
2025 (654)
2022 (620)
2023 (611)
2021 (596)
2024 (576)
2026 (508)
2007 (489)
2020 (389)
2019 (346)
2018 (313)
2017 (306)
2005 (277)
2006 (226)
2004 (102)
2003 (21)
2002 (3)

UNIPROT ID/AC

Q9GRG6 (5)
O97232 (2)
P02930 (2)
P03819 (2)
P06983 (2)
P0A6A8 (2)
P0A6B7 (2)
P0A6W3 (2)
P0A749 (2)
P0A7A9 (2)
P0A7E5 (2)
P0A817 (2)
P0A825 (2)
P0A887 (2)
P0A9D8 (2)
P0A9P4 (2)
P0AA25 (2)
P0AAD4 (2)
P0AAI5 (2)
P0AB80 (2)
P0ABG4 (2)
P0ABH7 (2)
P0ABI4 (2)
P0ABU7 (2)
P0ABV2 (2)
P0AC69 (2)
P0AEB2 (2)
P0AED7 (2)
P0AEK2 (2)
P0AF16 (2)

ENSEMBL ID

ENSG00000170477 (10)
ENSG00000229353 (4)
ENSG00000147251 (2)
ENSG00000247315 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000098557 (1)
ENSMUSP00000069525 (1)
ENSMUSP00000140201 (1)
ENSMUSP00000141097 (1)
ENSMUSP00000141637 (1)

CHEBI ID

CHEBI:15428 (116)
CHEBI:16335 (105)
CHEBI:16027 (94)
CHEBI:15361 (13)
CHEBI:16526 (13)
CHEBI:57642 (13)
CHEBI:17754 (11)
CHEBI:15379 (10)
CHEBI:15422 (10)
CHEBI:58121 (9)
CHEBI:16761 (8)
CHEBI:16908 (8)
CHEBI:18021 (8)
CHEBI:4170 (8)
CHEBI:58273 (8)
CHEBI:11851 (7)
CHEBI:128769 (7)
CHEBI:14314 (7)
CHEBI:14649 (7)
CHEBI:15343 (7)
CHEBI:15377 (7)
CHEBI:15589 (7)
CHEBI:15971 (7)
CHEBI:16240 (7)
CHEBI:16452 (7)
CHEBI:16474 (7)
CHEBI:16630 (7)
CHEBI:16810 (7)
CHEBI:16828 (7)
CHEBI:17001 (7)

Metabolite Name

Creatine (82)
Adenosine (78)
Hypoxanthine (78)
Choline (76)
Taurine (76)
Xanthine (73)
Creatinine (72)
Inosine (70)
Adenine (69)
Phenylalanine (67)
Uridine (67)
Guanosine (65)
Glycine (63)
Valine (63)
Tryptophan (62)
Tyrosine (61)
Leucine (59)
Uracil (59)
Methionine (57)
Ornithine (57)
Proline (57)
Threonine (57)
Glutamine (56)
L-Phenylalanine (56)
Serine (56)
Betaine (55)
Cytidine (55)
Alanine (54)
Isoleucine (53)
Lysine (53)

First Public Date

2025 (116)
2014 (100)
2024 (97)
2026 (90)
2022 (54)
2023 (47)
2019 (46)
2020 (44)
2021 (34)
2015 (23)
2016 (22)
2017 (18)
2018 (17)
2013 (6)

Modelling Approach

Ordinary differential equation model (52)
Constraint-based model (14)
Population model (6)
Physiologically based pharmacokinetic model (2)
Differential equation model (1)
Other (1)

Study status

Recruiting (2)
Completed (1)

Lab affiliation

CEA-Marcoule, ProGenoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Ceze, France (12)
The Institute of Cancer Research (10)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (8)
Bioplatforms Australia (7)
Core Facility for Medical Bioanalytics Proteomics Platform Tübingen (PxP) Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (7)
Proteomics facility, Central Science Laboratory, University of Tasmania (7)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany (5)
Department of Molecular Cell Biology, Weizmann institute of Science, Israel (5)
Head of System Biology Lab. at Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (5)
Institute of Pharmacology and Structural Biology, CNRS, Toulouse, France (5)
Research Group Mitochondrial Disorders, Institute of Human Genetics, Technische Universität München, München, Germany (5)
University of Oxford (5)
Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain (4)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (4)
Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Department of Microbiology and Immunology at the Peter Doherty Institute of infection and immunity, University of Melbourne, Melbourne, Victoria, Australia (4)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (4)
Division of Cardiovascular Sciences, School of Medical Science, Faculty of Biology, Medicine and Health, The University of Manchester (4)
EDyP (4)
European Institute of Oncology, Milan, Italy (4)
Helmholtz-Centre for Environmental Research – UFZ, Department of Molecular Toxicology (4)
IBCH RAS (4)
Institute of Biochemistry (IBC, ETHZ) (4)
Institute of Cancer Research, London (4)
Institute of Neuronal Cell Biology Technical University of Munich Germany (4)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (4)
Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. (4)
Mendel University in Brno (4)
Moffitt Cancer Center Tampa, FL, USA (4)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (4)

Keyword

Metabolomics (1)
Molecular subtypes (1)
Multi-omics (1)
Radiomics (1)
Radiosurgery (1)
TSB-9-W1 (1)

IsPrivate

False (80)

Model Flag

Non Kinetic (9)
Non Miriam (2)

Submitter Keywords

FROG (8)
COVID-19 (6)
Not Peer Reviewed (3)
Immuno-oncology (2)
TransQST (2)
FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (17)
protozoa (2)
viruses (1)
fungi (1)

Modification

Not available (8)
N6 (6)
15.994915 (4)
2x(15)N labeled L-lysine (3)
42.010565 (3)
4x(15)N labeled L-arginine (3)
+3amu) (2)
-17.026549 (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
6-dioxaoctanediamine derivatized cysteine (2)
0.984 (1)
15.99491 (1)
1x(15)N labeled L-valine (1)
3x(2)H labeled N6-acetyl-L-lysine (1)
4-dinitrophenyl modified residue (1)
43.00581 (1)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)
57.021464 (1)
58.005479 (1)
6.020129 (1)
6x(2)H labeled dimethylated L-arginine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (8638)
RNA-seq of coding RNA (1340)
ChIP-seq (800)
ChIP-chip by tiling array (643)
Comparative genomic hybridization by array (289)
Other (217)
Unknown experiment type (203)
RNA-seq of non coding RNA (180)
RNA-seq of coding RNA from single cells (165)
Methylation profiling by array (132)
Transcription profiling by tiling array (126)
ChIP-chip by array (101)
Methylation profiling by high throughput sequencing (87)
MicroRNA profiling by array (81)
DNA-seq (60)
RNA-seq of total RNA (58)
Genotyping by array (51)
Transcription profiling by RT-PCR (44)
Proteomic profiling by array (36)
Cell line - High-throughput sequencing (35)
ATAC-seq (33)
RNAi profiling by array (26)
High-throughput sequencing (24)
Animal - High-throughput sequencing (20)
RIP-seq (18)
Animal - One-color microarray (17)
Ribo-seq (17)
Transcription profiling by SAGE (15)
MicroRNA profiling by high throughput sequencing (13)
Hi-C (13)

Release Date

2022 (10261)
2025 (9690)
2023 (9234)
2021 (9063)
2024 (8229)
2020 (6750)
2019 (5094)
2018 (4380)
2015 (3948)
2016 (3874)
2017 (3670)
2014 (3582)
2013 (3317)
2012 (2706)
2010 (2615)
2011 (2603)
2026 (1564)
2009 (1353)
2008 (1305)
2007 (782)
2006 (444)
2005 (430)
2004 (240)
2003 (128)
2002 (100)
2001 (76)
2000 (65)
1999 (46)
1998 (45)
1997 (16)

Location

China (1)
Spain (1)
Taiwan (1)

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RNA sequencing on the infarct zone after ischemia reperfusion (I/R)

PRJNA642843 | ENA

RNA-seq analysis of mouse heart tissue ischemia/reperfusion (I/R)

PRJNA723502 | ENA

Integrative bioinformatics analyses identify an essential role of ZBP1 in myocardial I/R injury

PRJNA1320627 | ENA

RNA-seq analysis of SCC1 cells after JQ1, I-BET and/or INF-r treatment

PRJNA689302 | ENA

Companilactobacillus farciminis strain:CNCM-I-3699-R

Genome sequence of Rough variants of pleomorphic strain Lactobacillus farciminis CNCM-I-3699

PRJNA284511 | ENA

Expression data from mouse heart tissue ischemia/reperfusion (I/R) treated for 0,24,48,72 hours

PRJNA673424 | ENA

Thlaspi arvense cultivar:MN106(f/r/i)

Thlaspi arvense MN106(f/r/i) Resequencing

PRJNA1239120 | ENA

Integrative bioinformatics analyses identify an essential role of ZBP1 in myocardial I/R injury

Myocardial ischemia-reperfusion (I/R) injury is the primary factor that counteracts the beneficial effects of reperfusion therapy. However, the distinct pathophysiological processes and underlying mechanisms that govern the ischemic and reperfusion phases of myocardial I/R injury remain incompletely...

ORGANISM(S): Mus musculus

2025-09-08 | GSE307385 | GEO

RNA-seq analysis of mouse heart tissue ischemia/reperfusion (I/R)

Myocardial Ischemia-reperfusion injury is a serious clinical problem that lacks effective therapy. However, the precise mechanism leading to myocardial I/R injury remains unclear.Our study defined the dynamic changes of the differentially expressed genes related myocardial I/R injury, and provide ba...

ORGANISM(S): Mus musculus

2021-04-22 | GSE172480 | GEO

Topoisomerase I poisoning induces R-loop changes and DNA damage in human cancer cells [END-seq]

PRJNA998812 | ENA

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101025 Results

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