infect - OmicsDI

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Unknown (10114)
Genomics (1592)
Transcriptomics (1304)
Proteomics (346)
Metabolomics (32)
Other (20)
Models (12)
Methylation profiling (2)
Genomic (1)
Clinical (1)

Organisms

Homo sapiens (625)
Mus musculus (185)
Plasmodium falciparum (82)
Anopheles gambiae (37)
Macaca mulatta (26)
Plasmodium falciparum 3D7 (18)
Plasmodium berghei (16)
Rattus norvegicus (14)
Gallus gallus (14)
Arabidopsis thaliana (13)
Mycobacterium tuberculosis (12)
Sus scrofa (12)
Bos taurus (11)
Pseudomonas aeruginosa (11)
Escherichia coli (10)
Aedes aegypti (9)
Schistosoma mansoni (8)
Candida albicans (8)
Anopheles arabiensis (6)
Anopheles funestus (6)
Streptococcus pneumoniae (6)
Macaca nemestrina (4)
Anopheles stephensi (4)
Streptococcus pyogenes (4)
Plasmodium chabaudi chabaudi (3)
Macaca fascicularis (3)
Plasmodium chabaudi (3)
Helicobacter pylori (3)
Bordetella pertussis (3)
Vesicular stomatitis virus (1)

Organisms

Homo sapiens (143)
Mus musculus (81)
Sus scrofa (12)
Pseudomonas aeruginosa (8)
Drosophila melanogaster (7)
Escherichia coli (7)
Arabidopsis thaliana (6)
Plasmodium berghei (6)
Plasmodium falciparum (6)
Gallus gallus (6)
Nicotiana benthamiana (6)
Mycobacterium tuberculosis (5)
Rattus norvegicus (5)
Bacteriophage sp. (4)
Salmo salar (4)
Listeria monocytogenes (4)
Solanum lycopersicum (4)
Staphylococcus aureus (4)
Danio rerio (4)
Pseudomonas aeruginosa PA14 (3)
Escherichia coli O157:H7 (3)
Clostridioides difficile (3)
Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 (3)
Verticillium dahliae (3)
Caudoviricetes (3)
Macaca mulatta (3)
Pseudomonas aeruginosa PAO1 (3)
marine metagenome (3)
Toxoplasma gondii (3)
Bos taurus (3)

Repository

ENA (1513)
biostudies-arrayexpress (1066)
geo (341)
pride (297)
MetaboLights (30)
iProX (18)
MassIVE (13)
BioModels (12)
PanoramaPublic (8)
EGA (3)
GPMDB (3)
jPOST (3)
GNPS (2)
dbGaP (1)

Tissue

Cell culture (63)
Epithelial cell (17)
Blood plasma (11)
Whole body (11)
Blood (8)
Blood cell (7)
Macrophage (7)
Saliva (7)
Blood serum (5)
Lung (5)
Cell suspension culture (4)
Fibroblast (4)
Permanent cell line cell (4)
B cell (3)
Brain (3)
Hepatocyte (3)
Kidney (3)
Ovary (3)
Plant cell (3)
Prokaryotic cell (3)
T cell (3)
Brain microvascular endothelial cell (2)
Cerebrospinal fluid (2)
Erythrocyte (2)
Fungal cell (2)
Gastric cancer cell line (2)
HeLa cell (2)
Leaf (2)
Liver (2)
Spleen (2)

Disease

Plasmodium falciparum malaria (8)
COVID-19 (6)
Malaria (5)
Normal (4)
Cancer (3)
Not Available (3)
Breast cancer (2)
HIV (2)
Aviremic HIV (1)
HIV encephalitis (1)
HIV-1 seropositive (1)
HIV-associated dementia (1)
Primary effusion lymphoma (PEL) (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
Severe malaria (1)
P. berghei NK65 infected erythrocyte's infection (1)
Uninfected (1)
HIV and HCV coinfected (1)
Uninfected 11dpi (1)
Immuno-osseus dysplasiaspondyloenchondrodysplasia (SPENCD) (1)
Infected (1)
HIV-Tuberculosis with Immune Reconstitution Inflammatory Syndrome (1)
Not infected (1)
Exposed_Seronegative (1)
HIV viral load > 750000 copies /ml (1)
Colorectal adenocarcinoma (1)
Breast carcinoma (1)
HIV state: positive, infected with non-typhoidal salmonellosis (1)
HCMV infected (primary) (1)
2) lymphoid malignancies (1)

Technology Type

Mass Spectrometry (297)
Shotgun proteomics (177)
Bottom-up proteomics (49)
Affinity purification coupled with mass spectrometry proteomics (30)
Mass spectrometry (23)
Data-dependent acquisition (20)
Gel-based experiment (18)
SWATH MS (10)
Top-down proteomics (10)
Data-independent acquisition (8)
Mass spectrometry assay (6)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
DiaPASEF (3)
All-ion fragmentation (2)
Immunopeptidomics (2)
SRM/MRM (2)
ILLUMINA, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Affinity proteomics (1)
HDMSE (1)
MSE (1)
Mass spectrometry imaging (1)
RNA mass spectrometry (1)

Instrument Platform

Illumina HiSeq 2500 (21)
NextSeq 500 (20)
Illumina HiSeq 2000 (16)
Illumina HiSeq 4000 (13)
Illumina MiSeq (12)
Illumina Genome Analyzer II (8)
Illumina NovaSeq 6000 (7)
Scanning hardware (4)
NextSeq 550 (3)
None (2)
Sequel (2)
Illumina Genome Analyzer IIx (2)
418 [Affymetrix] (2)
Axon GenePix 4000B scanning hardware (2)
Illumina MiniSeq (2)
BGISEQ-500 (2)
Illumina HiSeq 3000 (2)
SnakePipes 3.4 (1)
NEBNext Ultra II DNA Library Prep Kit (1)
AB 310 Genetic Analyzer (1)
Local workstation (1)
Chromium Single Cell 5' Library & Gel Bead Kit v2 (1)
FLOQSwab (Copan) (1)
HTG EdgeSeq Processor; Applied Biosystems 7500 fast Real-time PCR Instrument (1)
Maxwell® 16 AS2000 (1)
FACSAria III (1)
Applied Biosciences (1)
Flow Chamber infection model (1)
MoFlo XDP (Beckman Coulter) or a FACSAria II (Becton Dickinson) (1)
Fluidigm C1 autoprep system (1)

Publication Date

2013 (147)
2010 (142)
2012 (126)
2014 (123)
2015 (119)
2011 (113)
2021 (98)
2025 (93)
2016 (93)
2022 (87)
2008 (85)
2024 (73)
2023 (73)
2019 (67)
2018 (65)
2020 (58)
2026 (53)
2009 (53)
2017 (38)
2007 (33)
2005 (19)
2006 (12)
2004 (2)
2003 (1)

CHEBI ID

CHEBI:15428 (7)
CHEBI:15891 (7)
CHEBI:30769 (7)
CHEBI:15741 (6)
CHEBI:7916 (6)
CHEBI:17750 (6)
CHEBI:15354 (6)
CHEBI:42111 (5)
CHEBI:24266 (5)
CHEBI:33508 (5)
CHEBI:25094 (5)
CHEBI:18257 (5)
CHEBI:25017 (5)
CHEBI:28875 (5)
CHEBI:17268 (5)
CHEBI:6650 (5)
CHEBI:28044 (5)
CHEBI:17154 (5)
CHEBI:16235 (5)
CHEBI:17568 (5)
CHEBI:17203 (5)
CHEBI:16704 (5)
CHEBI:16015 (5)
CHEBI:16414 (5)
CHEBI:15756 (5)
CHEBI:144829 (4)
CHEBI:16113 (4)
CHEBI:17822 (4)
CHEBI:18237 (4)
CHEBI:22660 (4)

Metabolite Name

Phenylalanine (4)
Palmitic acid (4)
Linoleic acid (4)
Leucine (3)
Glycine (3)
Uracil (3)
Pyroglutamic acid (3)
L-Proline (3)
Gluconic acid (3)
Ornithine (3)
Methionine (3)
Taurine (3)
Citric acid (3)
Stearic acid (3)
Lysine (3)
Tyrosine (3)
Serine (3)
Adenosine (3)
Oleic acid (3)
Isoleucine (3)
Glucose (3)
Glutamic acid (3)
Aspartic acid (3)
Guanosine (3)
L-Valine (3)
Talose (2)
Beta-Nicotinamide adenine dinucleotide (2)
Glycerate (2)
Myo-inositol (2)
5-oxoproline (2)

First Public Date

2013 (221)
2024 (157)
2025 (154)
2023 (150)
2014 (136)
2022 (117)
2026 (104)
2021 (104)
2020 (89)
2019 (87)
2018 (64)
2017 (48)
2016 (39)
2015 (26)
2010 (9)
2012 (5)
2011 (3)

Modelling Approach

Ordinary differential equation model (6)
Constraint-based model (6)

Study status

Completed (1)

Lab affiliation

Drug Discovery Unit Wellcome Centre for Anti-Infectives Research Division of Biological Chemistry and Drug Discovery University of Dundee Dundee, DD1 5EH. UK (5)
EDyP (4)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (3)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
Department of Comparative Biochemistry and Bioanalytics Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University in Krakow (2)
Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA. (2)
Functional Genomics, University Medicine Greifswald, Germany (2)
Human Phenome Institute,Zhangjiang FudanInternational Innovation Center, Fudan UniversityShanghai, 201203, China. (2)
Icahn School of Medicine at Mount Sinai (2)
Institute of Parasitology, University of Bern, Switzerland (2)
Pacific Northwest National Laboratory (2)
Program in Molecular Medicine, University of Massachusetts Chan Medical School, Worcester, MA, 01605-2377, USA (2)
State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, Hubei, China (2)
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, PR China (2)
University of Copenhagen, Section of Microbiology (2)
Zhejiang University (2)
1. Fisheries College, Key Laboratory of Healthy Mariculture for the East China Sea, Ministry of Agriculture, Jimei University, Xiamen, Fujian, 361021, PR China (1)
733 N. Broadway Miller Research Building room 527 Johns Hopkins University Baltimore, MD 21205 (1)
Academy of Sciences of the Czech Republic Institute of Microbiology, v.v.i. Prague, Czech Republic (1)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (1)
Andalusian Center for Grape and Grapevine Research. CeiA3. Marine and Environmental Sciences Faculty. University of Cadiz. Puerto Real, 11510, Cádiz, Spain. (1)
Associate Professor at University of Campinas, Sao Paulo-Brazil (UNICAMP-SP. (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (lab head) (1)
Associate Professor, Pediatrics Adjunct Associate Professor, Microbiology and Global Health Affiliate Member: FHCRC Consortium University of Washington Seattle Childrens Research Institute 1900 9th Ave SeattleWA 98101-1304 (1)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive Stanford, CA 94305-5175, USA (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
Bioeconomy Science Institute, AgResearch Ltd., Lincoln 7674, New Zealand. (1)
Biology Department, University of Firenze. Italy. (1)
Biomedical Research Center, Slovak Academy of Sciences (1)

Keyword

Pfizer SARS-CoV-2 Vaccine BNT162b2, Moderna SARS-CoV-2 Vaccine, Novavax COVID-19 Vaccine NVX-CoV2373 (1)

IsPrivate

False (12)

Model Flag

Non Kinetic (2)

Submitter Keywords

Immuno-oncology (4)
Oncology (1)
FROG (1)

Classification

bacteria (283)
viruses (53)
protozoa (30)
fungi (14)
helminths (10)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(2)H labeled dimethylated residue (1)

Study type

Transcription profiling by array (726)
RNA-seq of coding RNA (115)
Other (26)
ChIP-seq (25)
RNA-seq of non coding RNA (23)
Comparative genomic hybridization by array (22)
Unknown experiment type (17)
Methylation profiling by array (14)
RNA-seq of coding RNA from single cells (12)
Transcription profiling by RT-PCR (11)
ChIP-chip by array (7)
DNA-seq (6)
Proteomic profiling by array (6)
MicroRNA profiling by high throughput sequencing (5)
Methylation profiling by high throughput sequencing (5)
ChIP-chip by tiling array (4)
Transcription profiling by tiling array (4)
RNA-seq of total RNA (4)
High-throughput sequencing (3)
RNAi profiling by array (3)
Genotyping by array (3)
MicroRNA profiling by array (3)
Transcription profiling by SAGE (2)
Animal - Two-color microarray (2)
One-color microarray (2)
Human - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Genotyping by high throughput sequencing (2)
Differential (1)
RIP-chip by array (1)

Release Date

2022 (1077)
2021 (1040)
2023 (1002)
2020 (860)
2024 (758)
2025 (732)
2019 (680)
2018 (607)
2016 (529)
2014 (508)
2017 (506)
2015 (499)
2013 (396)
2012 (349)
2011 (309)
2010 (299)
2008 (201)
2009 (163)
2007 (125)
2006 (91)
2005 (87)
2026 (70)
2004 (52)
2003 (51)
2000 (43)
2002 (40)
1998 (37)
2001 (34)
1999 (32)
1997 (1)

Location

United Kingdom (1)

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Plasmodium knowlesi can adapt to infect Duffy-negative Erythrocytes - nanopore reads

PRJEB90622 | ENA

NATCANCER-A16341B 1 2 iNV GOV 3 4GOV

Oncolytic viruses (OVs) are replication-competent viruses that selectively infect tumor cells and induce anti-tumor responses. However, systemic delivery is limited by neutralizing antibodies and poor intratumoral bioavailability. We developed iNV-GOV, a tumor-targeted, low-immunogenic platform that...

ORGANISM(S): Homo sapiens (Human)

2025-10-03 | PXD067837 | Pride

Inv gov and gov

STAT3 overexpression lentivirus infect human broncho epithelial cells

PRJNA1215448 | ENA

Proteomic Profiling of exosomes in cell culture supernatant of hBMEC infected by E. coli

Exosomes are small vesicles with a diameter of approximately 30-140nm. This double-layer phospholipid membrane encapsulates a variety of proteins, lipids and nucleic acids, which are produced and released by cells under specific conditions, participating in a large scale of regulatory processes. The...

ORGANISM(S): Homo sapiens (Human)

2023-03-08 | PXD021064 | Pride

Proteomic exosomes hbmec infect e. coli

SARS-CoV-2 variants divergently infect and damage cardiomyocytes in vitro and in vivo

PRJNA1053377 | ENA

PmCQ2 infect mice lung

PRJNA705521 | ENA

Plasmodium knowlesi can adapt to infect Duffy-negative Erythrocytes

PRJEB88498 | ENA

Phages that infect Erwinia amylovora

PRJNA1162934 | ENA

Diverse virulent pneumophages infect Streptococcus mitis.

Not available

S-EPMC4334900 | biostudies-literature

SARS-CoV-2 variants divergently infect and damage cardiomyocytes in vitro and in vivo

SARS-CoV-2 variants are known to exhibit different tropism and pathogenicity in respiratory cells, but their effect on cardiomyocytes (CMs) is unclear. Cardiac infection and damage induced by SARS-CoV-2 variants were examined using human induced pluripotent stem cell-derived (hiPSC-) CMs. Different ...

ORGANISM(S): Homo sapiens

2026-07-31 | GSE250333 | GEO

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