metatranscriptomics

Show results for

Genomics (1160)
Unknown (619)
Transcriptomics (27)
Proteomics (23)
Metabolomics (9)
Other (3)
Genomic (1)
Clinical (1)

Organisms

human gut metagenome (4)
Arabidopsis thaliana (3)
Homo sapiens (3)
Limosilactobacillus fermentum (2)
Mus musculus (2)
mixed culture KAZ_0815 (1)
uncultured marine microorganism (1)
marine metagenome (1)
soil metagenome (1)
mouse gut metagenome (1)
freshwater metagenome (1)
Hirudo verbana (1)
Bacteroides xylanisolvens XB1A (1)
bovine gut metagenome (1)
Fibrobacter succinogenes subsp. succinogenes S85 (1)
Roseburia hominis (1)
Roseburia intestinalis (1)
Piromyces sp. (1)
Ruminococcus sp. (1)
Lachnospira eligens (1)
[Eubacterium] cellulosolvens (1)
Neocallimastix frontalis (1)
Cellulomonas fimi (1)
Clostridium cellulovorans (1)
Fibrobacter succinogenes (1)
Pseudobutyrivibrio xylanivorans (1)
Piromyces sp. 'equi' (1)
Piromyces rhizinflatus (1)
Orpinomyces joyonii (1)
Enterobacter sp. (1)

Organisms

soil metagenome (150)
organismal metagenomes (113)
plant metagenome (52)
feces metagenome (47)
marine metagenome (32)
fungus metagenome (28)
lichen metagenome (26)
lake water metagenome (24)
synthetic metagenome (14)
human gut metagenome (8)
freshwater metagenome (7)
sediment metagenome (7)
Homo sapiens (7)
bioreactor metagenome (7)
Tuber melanosporum (6)
marine sediment metagenome (6)
hot springs metagenome (4)
seawater metagenome (4)
mouse gut metagenome (4)
rhizosphere metagenome (4)
Mus musculus (4)
moss metagenome (3)
anaerobic digester metagenome (3)
sludge metagenome (3)
gut metagenome (3)
root metagenome (3)
bioreactor sludge metagenome (3)
Marasmius fiardii PR-910 (2)
Cellulomonas sp. JGI 051 (2)
uncultured eukaryotic phytoplankton (2)

Repository

ENA (1160)
geo (20)
pride (19)
biostudies-arrayexpress (8)
MetaboLights (7)
MassIVE (4)
GNPS (2)
NODE (2)
dbGaP (1)

Tissue

Cecum (1)
Cell culture (1)
Cell line cell (1)
Feces (1)
Gill (1)
Saliva (1)

Disease

Carcinoma (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (10)
Mass spectrometry (6)
Metaproteomics (4)
Top-down proteomics (3)
Bottom-up proteomics (2)
Mass spectrometry assay (1)
Data-independent acquisition (1)
DiaPASEF (1)
Gel-based experiment (1)

Instrument Platform

Gas Chromatography MS - positive (3)
TSQ Vantage (Thermo Scientific) (2)
LTQ Orbitrap Elite (2)
Q Exactive (2)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2500 (1)
LTQ FT (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
LTQ FT Ultra (Thermo Scientific) (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2023 (9)
2022 (7)
2026 (6)
2025 (6)
2020 (6)
2019 (4)
2013 (4)
2021 (4)
2016 (3)
2012 (2)
2024 (2)
2017 (2)
2008 (1)
2011 (1)
2014 (1)
2015 (1)

CHEBI ID

CHEBI:18257 (5)
CHEBI:16811 (4)
CHEBI:25017 (4)
CHEBI:15428 (4)
CHEBI:17148 (4)
CHEBI:16958 (4)
CHEBI:15741 (4)
CHEBI:16865 (4)
CHEBI:17568 (4)
CHEBI:17596 (4)
CHEBI:17992 (3)
CHEBI:33508 (3)
CHEBI:19475 (3)
CHEBI:17822 (3)
CHEBI:26271 (3)
CHEBI:25094 (3)
CHEBI:15978 (3)
CHEBI:16040 (3)
CHEBI:18186 (3)
CHEBI:26986 (3)
CHEBI:16708 (3)
CHEBI:16750 (3)
CHEBI:24898 (3)
CHEBI:17754 (3)
CHEBI:15963 (3)
CHEBI:6650 (3)
CHEBI:28044 (3)
CHEBI:17821 (3)
CHEBI:68329 (3)
CHEBI:16235 (3)

Metabolite Name

Norvaline (3)
Glycine (3)
Putrescine (3)
Ornithine (3)
Succinic acid (3)
Glyceric acid (3)
Malic acid (3)
Pentan-2-one (2)
L-Alpha-aminobutyric acid (2)
Carbonic acid (2)
1H-Indole-3-acetamide (2)
Melezitose (2)
Syringic acid (2)
Gamma-Aminobutyric acid (2)
Pyridoxal (2)
Ribitol (2)
3-Aminoisobutanoic acid (2)
2-Methylpropyl formate (2)
S-Methyl butanethioate (2)
Lactulose (2)
Oxoglutaric acid (2)
4-Hydroxycinnamic acid (2)
Ethylmethylacetic acid (2)
L-Cystine (2)
Phosphoric acid (2)
Pyrrole-2-carboxylic acid (2)
Phenylethylamine (2)
L-Norleucine (2)
Indoleacetic acid (2)
Lactose (2)

First Public Date

2017 (400)
2019 (153)
2024 (91)
2025 (79)
2026 (78)
2023 (61)
2022 (53)
2021 (48)
2020 (45)
2016 (39)
2014 (35)
2018 (27)
2013 (27)
2015 (21)
2011 (2)
2012 (1)

Classification

viruses (2)
bacteria (2)

Study status

Completed (1)

Study type

RNA-seq of coding RNA (5)
Transcription profiling by array (3)
Observational (1)

Release Date

2025 (95)
2023 (78)
2022 (78)
2024 (69)
2021 (63)
2020 (53)
2018 (39)
2019 (35)
2017 (32)
2016 (18)
2015 (16)
2013 (13)
2014 (12)
2026 (10)
2012 (9)
2011 (4)
2008 (2)
2010 (1)

Lab affiliation

European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK (3)
University of Illinois Urbana-Champaign (2)
Department Molecular Environmental Biotechnology, Helmholtz Centre for Environmental Research - UFZ, Leipzig, Germany, Chair of Geobiotechnology, Technische Universität Berlin, Berlin, Germany (1)
Department of Food Safety and Environmental Health, University of Helsinki, Finland (1)
Department of Ocean Science, The Hong Kong University of Science and Technology (1)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany (1)
Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15, 04318 Leipzig, Germany (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China (1)
Max Planck Institute for Biochemistry (1)
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen, Copenhagen, Denmark (1)
RIVER Lab, Ecole Polytechnique Féférale de Lausanne, Sion, Switzerland (1)
Section eScience (S.3), Federal Institute for Materials Research and Testing, Berlin, Germany Bioinformatics Unit (MF1), Department for Methods Development and Research Infrastructure, Robert Koch Institute, Berlin, Germany (1)
The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK (1)
Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboudumc (1)
Translational Metabolic Laboratory, Radboudumc, Nijmegen, The Netherlands (1)