mitochondrion - OmicsDI

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Unknown (1722)
Transcriptomics (958)
Genomics (614)
Proteomics (351)
Metabolomics (89)
Models (11)
Other (2)

Organisms

Homo sapiens (405)
Mus musculus (339)
Arabidopsis thaliana (69)
Saccharomyces cerevisiae (41)
Rattus norvegicus (37)
Drosophila melanogaster (24)
Danio rerio (20)
Gallus gallus (19)
Caenorhabditis elegans (16)
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Sus scrofa (8)
Tetrahymena thermophila (7)
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Oryza sativa (7)
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Xylella fastidiosa (5)
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Schizosaccharomyces pombe (3)
Candida albicans (3)
Euglena agilis (2)
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Eukaryota (1)

Organisms

Homo sapiens (28)
Mus musculus (24)
Penaeus semisulcatus (6)
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Trachelospermum jasminoides (4)
Equus caballus (4)
Arabidopsis thaliana (4)
Plasmodium falciparum (4)
Pangasius conchophilus (3)
Oryctolagus cuniculus (3)
Saccharomyces cerevisiae (3)
Cochylidia moguntiana (2)
Comatella nigra (2)
Xylota coquilletti (2)
Eleutheronema rhadinum (2)
Pleurobrachia globosa (2)
Brassica napus (2)
Capsicum annuum (2)
Triticum aestivum (2)
Caenorhabditis elegans (2)
Lirularia iridescens (2)
Oryza sativa (2)
Cyanidioschyzon merolae (2)
Rattus norvegicus (2)
Monocercomonoides exilis (1)
Colletes collaris (1)
Amazona leucocephala (1)
Plasmodium falciparum HB3 (1)
Encephalitozoon cuniculi (1)
Eudiscopus denticulus (1)

Repository

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pride (105)
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Tissue

Cell culture (26)
Brain (5)
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Heart (4)
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Left atrium (1)
Cardiac muscle tissue of atrium (1)
Rumen epithelium (1)
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T-lymphocyte (1)
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HEK-293 cell (1)

Disease

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Hepatocellular carcinoma-non tumorous region (1)
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Type 1 Diabetes Mellitus (1)
Squamous cell carcinoma (1)
Tuberculosis (1)
Barrett's esophagus (1)
Serum transferred arthritis (1)
Pre diabetic (1)
Sarcoma (1)
Chicken Anaemia Virus infected (1)
N/a (1)
Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Pontiac fever (1)
Oral cavity cancer (1)

Technology Type

Mass Spectrometry (105)
Shotgun proteomics (66)
Mass spectrometry (60)
Mass spectrometry assay (23)
Bottom-up proteomics (18)
Affinity purification coupled with mass spectrometry proteomics (10)
Data-independent acquisition (7)
NMR spectroscopy (5)
Gel-based experiment (4)
Data-dependent acquisition (4)
SWATH MS (3)
Top-down proteomics (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
NextSeq 500 (ILLUMINA), Illumina HiSeq 2500 (ILLUMINA) (1)
Illumina HiSeq 2000 (1)
Metaproteomics (1)
Proteogenomics (1)
Affinity proteomics (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (15)
Illumina NovaSeq 6000 (14)
Illumina HiSeq 2000 (14)
NextSeq 550 (12)
Illumina HiSeq 2500 (12)
Illumina HiSeq 4000 (9)
Affymetrix GeneChip(R) HT Scanner (6)
Illumina HiSeq 1500 (5)
Illumina NovaSeq X (4)
NextSeq 2000 (4)
Illumina HiSeq 3000 (4)
NA (3)
Element AVITI (2)
10X Genomics Chromium (2)
Generation III Array Scanner [Amersham] (2)
Axon GenePix 4000B scanning hardware (2)
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Illumina MiSeq (2)
Active Motif Catalog No. 53150 (1)
ATAC-seq kit (Catalog No. 53150, Active Motif) (1)
Qsep400 (1)
Qubit fluorometer (1)
High-performance computing workstation (1)
Protocol computer workstation running R statistical software (1)
Thermal cycler (PCR); Covaris ME220 focused ultrasonicator; magnetic separation rack; Agilent TapeStation system (D5000 and D1000 ScreenTape assays); Qubit fluorometer or equivalent; microcentrifuge. (1)
JANUS® G3 MDT automated liquid handling workstation (PerkinElmer); thermal cycler or incubator (42 °C); Zymo DNA Clean & Concentrator columns; AMPure XP magnetic bead purification system; magnetic separation rack. (1)
Multichannel pipettes or automated liquid handler; 384-well tissue culture plates; Class II biological safety cabinet; CO₂ incubator (37 °C, 5% CO₂). (1)
HIVE computer cluster (1)
Bio-Rad T100 Thermocycler (1)
Chromium Controller (10X Genomics) (1)

Publication Date

2010 (118)
2015 (115)
2013 (95)
2011 (92)
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2012 (78)
2014 (76)
2008 (72)
2023 (63)
2021 (53)
2009 (52)
2020 (47)
2019 (47)
2026 (45)
2018 (31)
2007 (27)
2017 (26)
2006 (21)
2005 (12)
2004 (7)

UNIPROT ID/AC

P10515 (2)
P01275 (2)
Q96G03 (2)
P54840 (2)
Q16822 (2)
Q15181 (2)
P17858 (2)
P35557 (2)
O75390 (2)
P11168 (2)
P16118 (2)
P05062 (2)
P00338 (2)
P07195 (2)
O00330 (2)
P09622 (2)
P07864 (2)
P04406 (2)
P01308 (2)
P30613 (2)
P36871 (2)
P06744 (2)
P06733 (2)
P09104 (2)
P13929 (2)
O00757 (2)
P09467 (2)
P35575 (2)
P35558 (2)
Q16851 (2)

CHEBI ID

CHEBI:30769 (22)
CHEBI:32816 (20)
CHEBI:16027 (17)
CHEBI:15422 (15)
CHEBI:16761 (15)
CHEBI:15351 (14)
CHEBI:16908 (13)
CHEBI:18066 (12)
CHEBI:44897 (11)
CHEBI:17552 (11)
CHEBI:422 (10)
CHEBI:15346 (10)
CHEBI:4170 (9)
CHEBI:30744 (9)
CHEBI:15996 (9)
CHEBI:4167 (8)
CHEBI:17659 (8)
CHEBI:16526 (3)
CHEBI:18357 (2)
CHEBI:15713 (2)
CHEBI:16077 (2)
CHEBI:28087 (2)
CHEBI:15377 (2)
CHEBI:24636 (2)
CHEBI:29052 (2)
CHEBI:28602 (2)
CHEBI:17835 (2)
CHEBI:17794 (2)
CHEBI:16001 (2)
CHEBI:16905 (2)

Metabolite Name

Creatine (15)
Inosine (14)
ATP (13)
Glycine (13)
Uridine (12)
Taurine (12)
ADP (12)
Hypoxanthine (11)
Adenine (11)
3-phosphoglycerate (11)
Adenosine (11)
Spermidine (11)
Glycine (10)
Proline (10)
Nicotinamide (10)
Guanosine (10)
AMP (10)
Xanthine (10)
Choline (10)
Valine (10)
Uracil (10)
Glycerol (10)
Myo-inositol (10)
Tyrosine (10)
Inosine (10)
Thymine (9)
Serine (9)
NAD+ (9)
Guanine (9)
Cytidine (9)

First Public Date

2022 (82)
2021 (78)
2026 (75)
2023 (71)
2024 (69)
2025 (42)
2013 (28)
2014 (27)
2020 (26)
2019 (24)
2017 (11)
2016 (11)
2015 (4)
2018 (3)

Modelling Approach

Ordinary differential equation model (5)
Constraint-based model (4)

Lab affiliation

EDyP (3)
University of Freiburg, Institute of Biology II, Biochemistry/Functional Proteomics (2)
Foetal Exposure Group School of Clinical Sciences University of Bristol United Kingdom (2)
Institute of Basic Medical Sciences, School of Basic Medicine, Peking Union Medical College; No. 5 Dongdansantiao, Dongcheng District, Beijing 100005, China (2)
LPHI, Univ Montpellier, CNRS, INSERM, Montpellier, France (2)
Institute of Chemistry, Slovak Academy of Sciences (2)
Dalian Institute of Chemical Physics, Chinese Academy of Sciences (2)
Institute of Molecular Biology (IMB) (2)
Institute of biochemistry 2, Goethe University. (1)
University of North Carolina at Chapel Hill, Dept. of Chemistry (1)
Technical University Munich Department of Chemistry Chair for organic Chemistry II Lichtenbergstraße 4 Garching bei München D-85748 Germany (1)
University of Gdansk, Laboratory of Mass Spectrometry (1)
Ultrasound Department, The Second Affiliated Hospital of Fujian University of Traditional Chinese Medicine (1)
Max-Planck-Institute for Biology of Ageing Department of Mitochondrial Proteostasis Joseph-Stelzmann-Str. 9b 50931 Cologne (1)
Drug Discovery and Evaluation Unit, Center for Research of Pathogenicity and Virulence of Parasites, BIOCEV, Charles University in Prague (1)
University of Applied Sciences Albstadt-Sigmaringen, Department of Life Sciences, Anton-Günther-Straße 51, 72488 Sigmaringen, Germany (1)
Institut Mondor de Recherche Biomédicale, INSERM, U955, 94010 Créteil, France Université Paris Est Créteil, 94010, Créteil, France (1)
Institute of Bioinformatics, ITPB, Bangalore, India (1)
Radboud Proteomics Center, Radboud Center for Mitochondrial Medicine, Department of Laboratory Medicine, Radboudumc (1)
Institute of dermatology, Chinese academy of medical sciences (1)
Institut de Pharmacologie et Biologie Structurale, IPBS, Université de Toulouse, CNRS, UPS, Toulouse, France (1)
School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, United Kingdom. (1)
Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA (1)
Dipartimento di Scienze e Tecnologie Ambientali Biologiche e Farmaceutiche Università degli Studi della Campania“Luigi Vanvitelli” (1)
Leibniz Institute of Plant Biochemistry Research Group Proteome Biology of Plant Interactions (1)
Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, CA, USA (1)
Department of cellular and molecular medicine, Laboratory of peroxisome biology and intracellular communication, KU Leuven, Belgium (1)
Department of Medical Biotechnology and Laboratory Science, Chang Gung University, Taiwan (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Am Klopferspitz 18 D-82152 Martinsried Germany (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic (1)

IsPrivate

False (11)

Model Flag

Non Kinetic (8)

Classification

protozoa (8)
fungi (3)

Study type

Transcription profiling by array (595)
RNA-seq of coding RNA (120)
Methylation profiling by array (28)
ChIP-seq (27)
Other (20)
Unknown experiment type (19)
Comparative genomic hybridization by array (14)
RNA-seq of coding RNA from single cells (14)
RNA-seq of non coding RNA (14)
RNA-seq of total RNA (11)
ChIP-chip by array (8)
ATAC-seq (7)
DNA-seq (5)
Methylation profiling by high throughput sequencing (5)
ChIP-chip by tiling array (4)
Transcription profiling by tiling array (4)
Transcription profiling by RT-PCR (3)
Transcription profiling by SAGE (2)
Animal - One-color microarray (2)
One-color microarray (2)
Cell line - High-throughput sequencing (2)
RNAi profiling by array (2)
MicroRNA profiling by high throughput sequencing (2)
Hi-C (2)
Genotyping by high throughput sequencing (2)
RIP-chip by array (1)
Human - Methylation microarray (1)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)

Release Date

2022 (179)
2015 (177)
2021 (172)
2010 (161)
2016 (155)
2023 (149)
2011 (148)
2014 (147)
2013 (142)
2012 (136)
2019 (132)
2024 (130)
2020 (128)
2025 (121)
2017 (114)
2018 (111)
2008 (103)
2009 (84)
2007 (46)
2006 (37)
2005 (20)
2026 (15)
2004 (15)
2003 (8)
2002 (7)
1999 (5)
2000 (3)
2001 (2)
1998 (2)
1997 (1)

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jmKudSpea1.1 mitochondrion

jmKudSpea1 mitochondrion

PRJEB81409 | ENA

Hexaploid wheat mitochondrion sequencing

PRJEB50328 | ENA

Tetraploid wheat mitochondrion sequencing

PRJEB50415 | ENA

Aegilops tauschii mitochondrion sequencing

PRJEB50417 | ENA

A mitochondrion-free eukaryote contains proteins preadapted for import into an exogenous mitochondrion-related organelle

The endobiotic flagellate Monocercomonoides exilis is the only eukaryote known to lose any form of mitochondria and all its associated proteins in its evolutionary past. This final stage of the mitochondrial evolutionary pathway may serve as a model to explain events at their very beginning such as ...

ORGANISM(S): Trichomonas vaginalis

2023-03-11 | PXD035701 | Pride