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MetabolomicsViral lysis and host reprogramming impact carbohydrate, amino acid, and osmolyte cycling in salt marsh tidal creek sediments

Salt marshes are highly productive ecosystems where microbial communities drive key

transformations of organic matter at rates often exceeding those of oceanic and inland

environments. Viruses are recognised as important drivers and regulators of global

biogeochemical cycling, y...

2026-06-26 | MTBLS12630 | MetaboLights
MetabolomicsCoupled nitrogen fixation and substrate stabilization drive ecological strategy shifts during microbial succession

Background:

Primary succession is predicted to proceed through shifts from stress-tolerant to competitive to cooperative ecological strategies as resource availability increases, yet molecular evidence for these transitions in microbial systems remains limited. Here, we used an integrated m...

2026-03-12 | MTBLS14041 | MetaboLights
GenomicsNitrogen cycling microorganisms
Nitrogen cycling microorganisms Raw sequence reads
PRJNA846981 | ENA
GenomicsNitrogen cycling microbiome in octocoral holobionts
Optimization of PCR Primer Systems to qualify and quantify Nitrogen Cycling Microbes in Coral Reef Octocorals
PRJEB43824 | ENA
GenomicsNitrogen cycling groundwater bacteria
Nitrate and ammonia as nitrogen sources for deep subsurface microorganisms
PRJEB9462 | ENA
TranscriptomicsAridity threshold in controlling ecosystem nitrogen cycling in arid and semi-arid grasslands
Higher aridity and more extreme rainfall events in drylands are predicted under climate change. Yet it is unclear how changing precipitation regimes may affect nitrogen (N) cycling, especially in areas with extremely high aridity. Here we investigated soil N isotopic values (M-NM-415N) along a 3200 ...
ORGANISM(S): soil metagenome 
2014-09-03 | E-MTAB-2722 | biostudies-arrayexpress
GenomicsArtificial reforestation has less diverse soil nitrogen-cycling genes than natural restoration
Artificial reforestation has less diverse soil nitrogen-cycling genes than natural restoration
PRJNA391498 | ENA
GenomicsMicrobial sequences of soil nitrogen cycling
Microbial sequences of soil nitrogen cycling Raw sequence reads
PRJNA1081613 | ENA
GenomicsArtificial reforestation has less diverse soil nitrogen-cycling genes than natural restoration
Reforestation is effective in restoring ecosystem functions and enhancing ecosystem services of degraded land. The three most commonly employed reforestation methods of natural reforestation, artificial reforestation with native Masson pine (Pinus massoniana Lamb.), and introduced slash pine (Pinus ...
ORGANISM(S): Bacteria Viruses Archaea Fungi 
2019-11-04 | GSE100379 | GEO
OtherCommunity composition of nitrous oxide related genes and their relationship to nitrogen cycling rates in salt marsh sediments
Salt marshes provide many key ecosystem services that have tremendous ecological and economic value. One critical service is the removal of fixed nitrogen from coastal waters, which limits the negative effects of eutrophication resulting from increased nutrient supply. Nutrient enrichment of salt ma...
ORGANISM(S): uncultured bacterium sediment metagenome synthetic construct 
2018-01-13 | GSE108888 | GEO
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