phages - OmicsDI

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Unknown (5444)
Genomics (1702)
Transcriptomics (132)
Proteomics (86)
Other (18)
Metabolomics (13)
Models (2)
Clinical (1)

Organisms

Homo sapiens (21)
Escherichia coli (19)
Salmonella enterica subsp. enterica serovar Typhimurium (10)
Pseudomonas aeruginosa (10)
Staphylococcus aureus (9)
Mus musculus (9)
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Thermus thermophilus HB8 (4)
Escherichia coli CFT073 (2)
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Escherichia coli O157:H7 (2)
Pacifastacus leniusculus (1)
Bacteroides phage p00 (1)
Acinetobacter baumannii AB5075 (1)
Pseudomonas phage PaP1 (1)
Geobacillus sp. E263 (1)
Mycobacterium phage Giles (1)
Shewanella piezotolerans WP3 (1)
Bacteroides thetaiotaomicron (1)
Trichomonas vaginalis (1)
Clostridium botulinum (1)
Bartonella grahamii (1)
Synechococcus phage S-PM2 (1)
Treponema denticola (1)
Cellulophaga baltica (1)
Listeria monocytogenes EGD-e (1)
Bacillus cereus (1)
Neisseria meningitidis (1)

Organisms

Escherichia coli (29)
Vibrio cholerae (28)
Caudoviricetes (15)
Pseudomonas aeruginosa (12)
Staphylococcus aureus (12)
Bacteriophage sp. (11)
Clostridioides difficile (11)
Homo sapiens (10)
marine metagenome (8)
unclassified bacterial viruses (7)
Escherichia coli str. K-12 substr. MG1655 (7)
unclassified Caudoviricetes (6)
soil metagenome (5)
human gut metagenome (5)
unclassified Vieuvirus (4)
Salmonella enterica subsp. enterica serovar Typhimurium (4)
Acinetobacter baumannii (4)
wastewater metagenome (4)
Klebsiella pneumoniae (4)
Mus musculus (4)
Klebsiella pneumoniae phage (3)
Ralstonia pseudosolanacearum (3)
Viruses (3)
Escherichia phage sp. (3)
hot springs metagenome (3)
Pseudomonas phage sp. (3)
viral metagenome (3)
Staphylococcus (3)
Salmonella enterica subsp. enterica (3)
insect gut metagenome (3)

Repository

ENA (1674)
geo (96)
biostudies-arrayexpress (74)
pride (63)
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NODE (1)
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Tissue

Cell culture (5)
Macrophage (2)
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Intestinal juice (1)
Urine (1)
Whole body (1)

Disease

Colorectal cancer (1)
Not Available (1)
Pancreatic cancer (1)
Disease free (1)
Human immunodeficiency virus infectious disease (1)
Urinary tract infection (1)

Technology Type

Mass Spectrometry (63)
Bottom-up proteomics (22)
Shotgun proteomics (22)
Data-dependent acquisition (16)
Mass spectrometry (9)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-independent acquisition (5)
Gel-based experiment (5)
Mass spectrometry assay (3)
MSE (2)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive (4)
Liquid Chromatography MS - negative - reverse phase (3)
Q Exactive Plus (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Novogene NGS DNA Library Prep Set (Cat No.PT004) (1)
TruSeq Nano DNA Low Throughput library preparation Kit (Illumina, San Diego, USA, REF#20015964) (1)
PureGene DNA extraction Kit (Qiagen) (1)
PEG8000, NaCl, DNase, Benzonase, EDTA, SDS (1)
PromethION (1)
Ultracentrifuge (1)
Spectronic Helios Alpha UV-Vis spectrophotometer (1)
Illumina Genome Analyzer IIx (1)
Illumina NovaSeq X (1)
NextSeq 2000 (1)
MinION (1)
NextSeq 500 (1)
AB 5500xl Genetic Analyzer (1)
Instrument (1)
LTQ Orbitrap Velos Pro (Thermo Scientific) (1)
LTQ Orbitrap XL (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
QE-HF (1)
TimsTOF Pro (1)
TimsTOF fleX (1)
Liquid Chromatography MS - negative - (1)
Liquid Chromatography MS - positive - (1)

Publication Date

2025 (46)
2024 (31)
2026 (29)
2023 (23)
2010 (19)
2021 (18)
2022 (9)
2020 (9)
2015 (8)
2013 (8)
2011 (8)
2016 (7)
2014 (7)
2019 (7)
2018 (7)
2017 (6)
2012 (6)
2009 (6)
2005 (5)
2008 (4)
2007 (4)
2004 (3)

CHEBI ID

CHEBI:17568 (5)
CHEBI:17368 (5)
CHEBI:15676 (4)
CHEBI:17748 (4)
CHEBI:15891 (4)
CHEBI:17361 (4)
CHEBI:17562 (4)
CHEBI:15603 (4)
CHEBI:17295 (4)
CHEBI:3219 (3)
CHEBI:17302 (3)
CHEBI:28864 (3)
CHEBI:29013 (3)
CHEBI:36491 (3)
CHEBI:34690 (3)
CHEBI:10049 (3)
CHEBI:17401 (3)
CHEBI:9123 (3)
CHEBI:17431 (3)
CHEBI:28866 (3)
CHEBI:28997 (3)
CHEBI:16356 (3)
CHEBI:37574 (3)
CHEBI:17768 (3)
CHEBI:17992 (3)
CHEBI:30805 (3)
CHEBI:17709 (3)
CHEBI:16708 (3)
CHEBI:15956 (3)
CHEBI:48928 (3)

Metabolite Name

Uracil (4)
Melibiose (4)
Oleic acid (4)
Dodecanoic acid (4)
Adenine (4)
Myristic acid (4)
Cytidine (4)
L-Phenylalanine (4)
Inosine (4)
Hypoxanthine (4)
Bupropion (3)
2-Methoxy-estradiol-17b 3-glucuronide (3)
Xanthosine 5-triphosphate (3)
Tobramycin (3)
Pentadecanal (3)
Palmitaldehyde (3)
Thiamine monophosphate (3)
Agmatine (3)
Cytidine monophosphate (3)
FAD (3)
AMP (3)
Thymine (3)
Pyroglutamic acid (3)
Myristoleic acid (3)
Carnosine (3)
Ornithine (3)
4-Hydroxybenzoic acid (3)
Palmitoleic acid (3)
Taurine (3)
Phenylpyruvic acid (3)

First Public Date

2013 (405)
2026 (183)
2024 (179)
2025 (166)
2023 (148)
2022 (128)
2021 (125)
2020 (76)
2019 (65)
2018 (63)
2017 (37)
2014 (36)
2015 (33)
2016 (26)
2012 (4)

Modelling Approach

Ordinary differential equation model (2)

Study status

Recruiting (1)

Lab affiliation

Max Planck Institute for Terrestrial Microbiology Marburg Germany (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
UCSF (2)
Applied Biosciences and Process Engineering, Anhalt University of Applied Sciences, Microbiology, Bernburger Straße 55, 06354 Köthen, Germany (1)
Assistant Professor,Department of Civil, Structural and Environmental Engineering, Ye lab, University at Buffalo(SUNY), USA (1)
Bavarian Center for Biomolecular Mass Spectrometry Gregor-Mendel-Strasse 4 85354 Freising Germany (1)
Bioanalytical Mass Spectrometry Group, Max Planck Institute for Multidisciplinary Sciences, Germany (1)
CEITEC Masaryk university (1)
CSIC (1)
Center for Structural Biology, Vlaams Instituut voor Biotechnologie and Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, B-1050 Brussel, Belgium (1)
Center for Synthetic Microbiology (SYNMIKRO) & Department of Chemistry, Philipps-University Marburg, Marburg, Germany (1)
Centre to Impact AMR, Monash University; Clayton, 3800, Australia Infection Program, Biomedicine Discovery Institute and Department of Microbiology, Monash University; Clayton, 3800, Australia (1)
Centro Nacional de Biotecnología (CNB-CSIC) (1)
Chloé Martens, Ph.D Chercheuse Qualifiée - FRS.FNRS Group Leader Structure and Function of Biological Membranes - Chemistry Department chloemartenslab.com - sfmb.ulb.be Phone :+32 2 650 53 83 Université Libre de Bruxelles - Campus Plaine. Building BC, Room 1C4 110 - Boulevard du Triomphe, Accès 2 1050 Brussels - Belgium (lab head) (1)
Dana-Farber Cancer Institute, Harvard Medical School, Howard Hughes Medical Institute (1)
Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, Brazil (1)
Department of Biochemistry Stanford Cancer Institute Stanford University Stanford, CA 94305, USA (1)
Department of Bionanoscience, Delft University of Technology (1)
Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093, USA (1)
Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, USA (1)
Department of Fundamental Microbiology, University of Lausanne, 1015 Lausanne, Switzerland. (1)
Department of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94403, USA Quantitative Biosciences Institute, University of California, San Francisco, San Francisco, CA 94403, USA Innovative Genomics Institute, Berkeley, CA, USA (1)
Department of Microbiology and Immunology, University of Michigan, 1150 W Medical Center Dr, 1526 MSRB1, Ann Arbor, MI, 48109. (1)
Department of Microbiology and Immunology, University of Otago (1)
Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand (1)
Department of Microbiology and Immunology, University of Otago, New Zealand (1)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, 94720, USA (1)
Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany (1)
Division of Gene Technology, KU Leuven, B-3001 Leuven, Belgium (1)

IsPrivate

False (2)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (314)
viruses (164)

Modification

Not available (2)

Study type

Transcription profiling by array (35)
RNA-seq of coding RNA (10)
Unknown experiment type (9)
Comparative genomic hybridization by array (9)
DNA-seq (4)
Other (2)
Methylation profiling by high throughput sequencing (2)
RNAi profiling by array (1)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
Observational (1)

Release Date

2023 (607)
2025 (604)
2022 (594)
2024 (559)
2021 (517)
2020 (365)
2019 (320)
2018 (263)
2017 (253)
2016 (184)
2015 (178)
2014 (157)
2012 (151)
2013 (119)
2011 (108)
2026 (81)
2010 (81)
2008 (54)
2009 (47)
2005 (46)
2007 (45)
2006 (44)
2003 (32)
2004 (29)
2001 (22)
2002 (21)
2000 (14)
1999 (13)
1998 (10)

Location

China (1)

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Integrated analysis of therapeutic efficacy and resistance mechanisms of lytic phages targeting ST218 K57 CR-hvKp

Clinical infection caused by carbapenem-resistant hypervirulent Klebsiella pneumoniae (CR-hvKP) is gradually increasing and spreading across the world, and phage therapy is a viable application as an alternative to antibiotics. However, additional clinical application is still restricted by the phag...

2025-09-18 | MTBLS12480 | MetaboLights

Phages DT1 and 2972 gene expression study

This series represents the gene expression study of phages DT1 and 2972 during the whole process of infection. Gene expression was measured at nine time intervals (0, 2, 7, 12, 17, 22, 27, 32, 37 minutes) during phage infection.

ORGANISM(S): Streptococcus thermophilus bacteriophage 2972

2005-08-10 | E-GEOD-2476 | biostudies-arrayexpress

Salmonella phages

PRJEB31250 | ENA

Phages ZC01 and ZC03 require Type-IV Pilus for Pseudomonas aeruginosa infection and have a potential for therapeutic applications

There has been a growing interest in bacteriophages as therapeutic agents to treat multidrug-resistant bacterial infections, particularly those caused by the ESKAPE group. The present work aimed at expanding the microbiological and molecular characterization of phages ZC01 and ZC03 and investigating...

ORGANISM(S): Pseudomonas aeruginosa PA14

2025-05-07 | PXD055478 | Pride

Protein ID of ϕRP31

Jumbo phages ϕRP31/ϕRP12 infecting Ralstonia solanacearum were isolated in Thailand. Virion proteins of ϕRP31 separated by SDS-PAGE were visualized with Coomassie Brilliant Blue. The protein bands were excised from the gel, digested with trypsin, and analyzed by liquid chromatography-tandem mass spe...

ORGANISM(S): Phage

2017-05-21 | PXD006355 | JPOST Repository

unclassified dsDNA phages

PRJNA16964 | ENA

Streptococcus species phages

Streptococcal phages

UTI phages LCPR1 cocktail

PRJEB98507 | ENA