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MetabolomicsMetabolomic homeostasis shifts after callus formation and shoot regeneration in tomato
Plants can regenerate from a variety of tissues on culturing in appropriate media. However, the metabolic shifts involved in callus formation and shoot regeneration are largely unknown. The metabolic profiles of callus generated from tomato (Solanum lycopersicum) cotyledons and that of shoot regener...
2018-06-29 | MTBLS447 | MetaboLights
MetabolomicsAnti-anemia drug FG4592 retards the AKI to CKD transition by improving vascular regeneration and anti-oxidative capability (day 10)

Acute kidney injury (AKI) is a known risk factor for the development of chronic kidney disease (CKD), with no satisfactory strategy to prevent the progression of AKI to CKD. Damage to the renal vascular system and subsequent hypoxia are common contributors to both AKI and CKD. Hypoxia inducible f...

2021-07-22 | MTBLS3056 | MetaboLights
MetabolomicsAnti-anemia drug FG4592 retards the AKI to CKD transition by improving vascular regeneration and anti-oxidative capability (day 21)

Acute kidney injury (AKI) is a known risk factor for the development of chronic kidney disease (CKD), with no satisfactory strategy to prevent the progression of AKI to CKD. Damage to the renal vascular system and subsequent hypoxia are common contributors to both AKI and CKD. Hypoxia inducible f...

2021-07-22 | MTBLS3003 | MetaboLights
TranscriptomicsTranscription profiling time series of Danio rerio heart regeneration
Amputation of heart tissue followed by regeneration of the heart. Samples were taken at 0 hpa (hours post-amputation), 6 hpa, 12 hpa, 24 hpa, 3 dpa and 5 dpa.
ORGANISM(S): Danio rerio 
2008-09-05 | E-MEXP-1239 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Arabidopsis reveals organ regeneration in plants is independent of stem cell niche activity
A critical step in regeneration is recreating the cellular identities and patterns of lost organs long after embryogenesis is complete. In plants, perpetual (indeterminate) organ growth occurs in apical stem cell niches, which have been shown to re-establish quickly when damaged or removed (1,2). He...
ORGANISM(S): Arabidopsis thaliana 
2008-11-13 | E-GEOD-9996 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Xenopus hindlimbs during stage-dependent complete and incomplete regeneration
Xenopus laevis tadpoles are capable of limb regeneration following amputation, in a process which initially involves the formation of a blastema. However, Xenopus has full regenerative capacity only through premetamorphic stages. We have used the Affymetrix Xenopus laevis Genome Genechip® microarr...
ORGANISM(S): Xenopus laevis 
2008-06-13 | E-GEOD-4738 | biostudies-arrayexpress
ProteomicsGlobal landscape of protein phosphorylation during plant regeneration initiation in cotton (Gossypium hirsutum L.)
Phosphorylation is one of the most common post-translational modifications and is central to many cellular signaling events; however, little is currently known about the phosphorylation landscape during somatic embryogenesis (SE) for plant regeneration. Here, we systematically analyzed the phosphopr...
ORGANISM(S): Gossypium hirsutum 
2025-03-18 | PXD061812 | Pride
Cotton (gossypium hirsutum l.)  phosphoproteomics  embryogenic differentiation  plant regeneration initiation 
TranscriptomicsTranscriptome profiling data for secondary vascular tissue regeneration in Populus tomentosa
Regeneration is a common strategy for plants to repair their damaged body plans after attack from other organisms or physical assaults. Trees with bark girdling on a large scale will grow new bark within one month and this bark regeneration after girdling system has been proven to be an efficient me...
ORGANISM(S): Populus tomentosa 
2012-07-25 | E-GEOD-25309 | biostudies-arrayexpress
TranscriptomicsNA-Seq reveals dynamic changes of gene expression in key stages of intestine regeneration in the sea cucumber Apostichopus japonicus.
Sea cucumbers (Holothuroidea; Echinodermata) have the capacity to regenerate lost tissues and organs.We used RNA-Seq to determine gene expression profiles associated with intestinal regeneration in A. japonicus at 3, 7, 14 and 21 days post evisceration (dpe) At least 15 individuals per stage, at 3,...
ORGANISM(S): Apostichopus japonicus 
2015-01-01 | E-GEOD-44995 | biostudies-arrayexpress
ProteomicsHistidine Kinase Inhibitors Impair Shoot Regeneration in Arabidopsis thaliana via Cytokinin Signalling and SAM Patterning Determinants
Reversible protein phosphorylation is a post-translational modification involved in virtually all plant processes, as it mediates protein activity and signal transduction. Here, we probe dynamic protein phosphorylation during de novo shoot organogenesis in Arabidopsis thaliana. We find that applicat...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-09-28 | PXD030754 | Pride
Cytokinin signalling Phosphoproteomics Kinase inhibitors Regeneration Organogenesis 
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