protein-biomarkers

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Unknown (21285)
Proteomics (1638)
Genomics (1000)
Transcriptomics (895)
Metabolomics (88)
Models (71)
Other (39)
Clinical (20)
Methylation profiling (17)
Genomic (9)
Multiomics (6)

Organisms

Homo sapiens (1981)
Mus musculus (313)
Rattus norvegicus (87)
Bos taurus (40)
Danio rerio (34)
Equus caballus (16)
Gallus gallus (14)
Scophthalmus maximus (6)
Salmo salar (6)
Macaca mulatta (6)
Sus scrofa (5)
Daphnia magna (4)
Mytilus edulis (3)
Caenorhabditis elegans (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Rhodospirillum rubrum (2)
Vitis labrusca x Vitis vinifera (1)
Chelon labrosus (1)
Petrolisthes cinctipes (1)
Crassostrea virginica (1)
Pinus radiata (1)
Pimephales promelas (1)
Leishmania donovani (1)
Thalassiosira pseudonana (1)
Cervus nippon (1)
Haloferax volcanii (1)
Hydra vulgaris (1)
Medicago sativa (1)
Toxoplasma gondii (1)

Organisms

Homo sapiens (464)
Mus musculus (111)
Rattus norvegicus (23)
Bos taurus (9)
Danio rerio (5)
Scophthalmus maximus (3)
Cricetulus griseus (3)
Oncorhynchus mykiss (3)
Canis lupus familiaris (3)
Macaca mulatta (3)
Fundulus heteroclitus (2)
Daphnia magna (2)
Eimeria acervulina (2)
unidentified (2)
Oryctolagus cuniculus (2)
Escherichia coli (2)
Ovis aries (2)
Sus scrofa (2)
Ophelina (1)
Trichechus manatus latirostris (1)
Araneus ventricosus (1)
Elliptio complanata (1)
Neogale vison (1)
Hipposideros armiger (1)
Rhodospirillum rubrum (1)
Microcebus murinus (1)
Pomacea canaliculata (1)
Mytilus edulis (1)
Escherichia coli O157:H7 (1)
Crassostrea virginica (1)

Repository

pride (984)
ENA (810)
geo (617)
biostudies-arrayexpress (455)
iProX (271)
MassIVE (170)
EGA (109)
MetaboLights (83)
BioModels (71)
PeptideAtlas (70)
jPOST (43)
PanoramaPublic (42)
GPMDB (15)
dbGaP (9)
GNPS (5)
LINCS (4)
PAXDB (3)

Tissue

Blood plasma (199)
Blood serum (111)
Cell culture (90)
Others (61)
Brain (61)
Cerebrospinal fluid (51)
Blood cell (46)
Epithelial cell (43)
Blood (38)
Urine (36)
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Lung (21)
Saliva (20)
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Permanent cell line cell (11)
Lymph node (10)
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Sperm (10)
Plasma Non-glyco (8)
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Tear (8)
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Blood platelet (7)
Bone marrow (7)
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Urine (1)

Disease

Breast cancer (45)
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Disease free (17)
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Not Available (15)
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Colorectal cancer (2)
Colorectal cancer (2)
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HIV (1)
Melanoma (1)
None (1)
Normal (1)
Adenomatous Polyps (1)
Bowel Cancer (1)
Bowel cancer (1)
Breast Neoplasms (1)
Colonic Neoplasms (1)
Malignant neoplasm of colon (1)
Neoplasms (1)
Ovarian Cancer (1)
Pancreatic Neoplasms (1)
Rectal Neoplasms (1)

Technology Type

Mass Spectrometry (984)
Shotgun proteomics (511)
Bottom-up proteomics (206)
Data-dependent acquisition (104)
Data-independent acquisition (90)
SWATH MS (79)
Mass spectrometry (56)
Gel-based experiment (45)
Top-down proteomics (40)
Affinity purification coupled with mass spectrometry proteomics (35)
SRM/MRM (34)
Mass spectrometry assay (21)
NMR spectroscopy (5)
Illumina HiSeq 2000 (2)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina HiSeq 2500, ILLUMINA (2)
Chemiluminescence (2)
ELISA (2)
Fluorescence imaging (2)
Fluorescence intensity (2)
NMR spectroscopy assay (2)
Complete Genomics (COMPLETE_GENOMICS) (1)
ILLUMINA, HiSeq X Ten (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina CytoSNP, Illumina HumanOmni2.5, ILLUMINA, Illumina 450k, Illumina HiSeq 2000 (1)
Illumina HiScanSQ, ILLUMINA (1)
Illumina HiSeq 2000, Illumina Genome Analyzer II, ILLUMINA (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Infinium_OmniExpress-24v1.0 (1)
NextSeq 500, Illumina HiSeq 2000, ILLUMINA, Illumina HiSeq 2500 (1)

Instrument Platform

Q Exactive (44)
Illumina NovaSeq 6000 (18)
Illumina HiSeq 4000 (17)
Orbitrap Fusion Lumos (16)
Instrument (15)
Orbitrap Exploris 480 (13)
LTQ Orbitrap (12)
LTQ Orbitrap Velos (11)
Orbitrap Eclipse (11)
Q Exactive HF (7)
TripleTOF 6600 (7)
Agilent High resolution C scanner (4)
Illumina NovaSeq X (4)
NextSeq 500 (4)
NextSeq 550 (2)
Illumina HiSeq 2500 (2)
6410 Triple Quadrupole LC/MS (2)
Ubuntu Linux (1)
Windows pc (1)
Petri dish (1)
G2565BA DNA microarray scanner (1)
Genetix aQuire (1)
Illumina iScan (1)
Na (1)
Gene Titan (1)
Scanning hardware (1)
Nanodrop (1)
Ion Torrent Proton (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)

Publication Date

2025 (350)
2026 (290)
2022 (224)
2024 (218)
2023 (218)
2021 (180)
2013 (126)
2020 (120)
2016 (112)
2018 (108)
2019 (102)
2011 (98)
2012 (82)
2015 (76)
2010 (74)
2005 (71)
2017 (64)
2014 (64)
2009 (36)
2008 (29)
2007 (20)
2006 (6)
2004 (1)

UNIPROT ID/AC

A0PJJ9 (66)
A0PJK1 (66)
A0S0A7 (66)
A6NFM2 (66)
A8K3J4 (66)
A8K761 (66)
A8K7W0 (66)
A8MU28 (66)
B1AK53 (66)
B1AM93 (66)
B2R6S5 (66)
B2RB13 (66)
B2RD24 (66)
B3KNC1 (66)
B3KXN9 (66)
B4DG68 (66)
B4DIA3 (66)
B4DK61 (66)
B4DKS0 (66)
B4DUG1 (66)
B7Z1R0 (66)
B7Z3W8 (66)
B7Z4Y6 (66)
B7Z792 (66)
C9JT23 (66)
C9JZ62 (66)
D3DX95 (66)
D9HTE9 (66)
E5KNH5 (66)
E5KS60 (66)

ENSEMBL ID

ENSG00000170477 (60)
ENSG00000229353 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:15354 (87)
CHEBI:15428 (83)
CHEBI:10983 (66)
CHEBI:1148 (66)
CHEBI:11805 (66)
CHEBI:11851 (66)
CHEBI:1296 (66)
CHEBI:13705 (66)
CHEBI:15035 (66)
CHEBI:15343 (66)
CHEBI:15355 (66)
CHEBI:15361 (66)
CHEBI:15374 (66)
CHEBI:15377 (66)
CHEBI:15379 (66)
CHEBI:15414 (66)
CHEBI:15440 (66)
CHEBI:15467 (66)
CHEBI:15570 (66)
CHEBI:15589 (66)
CHEBI:15603 (66)
CHEBI:15636 (66)
CHEBI:15698 (66)
CHEBI:15699 (66)
CHEBI:15710 (66)
CHEBI:15740 (66)
CHEBI:15748 (66)
CHEBI:15754 (66)
CHEBI:15893 (66)
CHEBI:15901 (66)

Metabolite Name

Hypoxanthine (20)
Adenosine (17)
Uracil (16)
Citric acid (15)
Creatinine (15)
Hippuric acid (15)
Taurine (15)
Uridine (15)
Adenine (14)
Choline (14)
Guanosine (14)
Inosine (14)
Ornithine (14)
Xanthine (14)
Citrulline (13)
Cytidine (13)
Pantothenic acid (13)
Uric acid (13)
Creatine (12)
L-Tyrosine (12)
Betaine (11)
Cholic acid (11)
Cytosine (11)
Deoxycholic acid (11)
L-Phenylalanine (11)
L-Tryptophan (11)
Linoleic acid (11)
Oleic acid (11)
Palmitic acid (11)
Spermidine (11)

First Public Date

2014 (131)
2025 (127)
2026 (108)
2024 (103)
2023 (72)
2021 (57)
2022 (47)
2020 (37)
2018 (30)
2019 (29)
2017 (24)
2015 (24)
2016 (13)
2013 (8)

Modelling Approach

Computational model (1)
Machine learning (1)
Ordinary differential equation model (1)

Study status

Recruiting (8)
Completed (5)
Not provided (4)
Active, not recruiting (1)
Enrolling by invitation (1)
Not yet recruiting (1)

Lab affiliation

Instituto de Investigaciones Sanitarias de Santiago de Compostela (15)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (6)
Chronic Disease Programme (UFIEC), Instituto de Salud Carlos III, 28220 Majadahonda, Madrid, Spain (5)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (5)
Michigan State University (5)
Proteomics core facility, Biomedical Research Institute, Seoul National University Hospital (5)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (5)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (4)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (4)
University of Liverpool (4)
Aarhus University Hospital, Denmark (3)
Chair of Proteomics and Bioanalytics Technical University of Munich Emil-Erlenmeyer-Forum 5 85354 Freising Germany (3)
European Institute of Oncology, Milan (3)
IRCCS Istituto G Gaslini (3)
IRCCS Istituto Giannina Gaslini (3)
Ist. G. Gaslini (3)
Lund University, Faculty of Medicine, Department of Clinical Sciences Lund, Division of Infection Medicine, Lund, Sweden (3)
Medizinisches Proteom-Center Ruhr-Universität Bochum Zentrum für klinische Forschung (ZKF) Raum 1.055 Universitätsstraße 150 44801 Bochum Germany (3)
Penn State College of Medicine, Department of Medicine, Penn State Cancer Institute. (3)
UHN (3)
University of Manchester (3)
VIB-UGent Center for Medical Biotechnology UGent Department of Biomolecular Medicine Technologiepark-Zwijnaarde 75 B9052 Gent Belgium (3)
1 Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and HUS Helsinki University Hospital, P.O.Box 263, FI-00029 HUS, Helsinki, Finland 2 Department of Biosciences and Nutrition, Karolinska Institutet, SE-171 76, Stockholm, Sweden. 3 Research Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki, Finland. (2)
CRUK -CRUK Scotland nstitute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (2)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (2)
Chronic Disease Programme, UFIEC, Instituto de Salud Carlos III, Majadahonda, E-28220 Madrid, Spain. (2)
Clinical Protein Science & Imaging, Dept. of Measurement Technology and Industrial Electrical Engineering, Lund University, Lund, Sweden (2)
DZNE Munich Neuroproteomics Feodor-Lynen Str. 17 81377 Munich Germany (2)
Dalian Institute of Chemical Physics (2)
Department of Biochemistry and Molecular Biology, VILLUM Center for Bioanalytical Sciences, University of Southern Denmark, Campusvej 55, DK - 5230 Odense M, Denmark (2)

Keyword

16s rRNA (1)
Acute bowel obstruction (1)
Adenocarcinoma of the colon (1)
Adenocarcinoma of the esophagus (1)
Adenocarcinoma of the pancreas (1)
Adenocarcinoma of the rectum (1)
Adiro 100 mg (1)
Adiro 300 mg (1)
Adult primary hepatocellular carcinoma (1)
Advanced adult primary liver cancer (1)
Aspirin (1)
Bacterial translocation (1)
Bevacizumab (1)
Biomarkers (1)
CRP (1)
Calcium (1)
Calcium, Dietary (1)
Cancer biomarkers (1)
CfDNA (1)
Chemerin (1)
Colorectal Neoplasm (1)
CtDNA (1)
Diagnostic Tests (1)
Dietary inflammatory index (1)
Dietary phytochemical index (1)
Dietary total antioxidant capacity (1)
Extensive stage small cell lung cancer (1)
Interleukines (1)
Leucovorin (1)
Levoleucovorin (1)

IsPrivate

False (71)

Model Flag

Non Kinetic (67)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

Classification

bacteria (6)
protozoa (1)

Modification

4x(15)N labeled L-arginine (5)
Not available (3)
2x(15)N labeled L-lysine (2)
15.994915 (1)
4 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
58.005479 (1)

Study type

Transcription profiling by array (305)
RNA-seq of coding RNA (54)
Proteomic profiling by array (20)
Unknown experiment type (15)
Methylation profiling by array (14)
Observational (11)
Interventional (8)
Comparative genomic hybridization by array (7)
RNA-seq of non coding RNA (6)
Genotyping by array (4)
Other (4)
Animal - One-color microarray (3)
Transcription profiling by RT-PCR (3)
ChIP-chip by SNP array (2)
Transcription profiling by SAGE (2)
MeDIP-seq (2)
Cell line - High-throughput sequencing (2)
RNA-seq of coding RNA from single cells (2)
ChIP-chip by tiling array (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
MBD-seq (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)
ChIP-seq (1)
MicroRNA profiling by array (1)
RNA-seq of total RNA (1)
Observational patient registry (1)

Release Date

2022 (2921)
2025 (2756)
2023 (2481)
2021 (2428)
2024 (2142)
2020 (1956)
2019 (1331)
2018 (1057)
2017 (887)
2016 (765)
2015 (625)
2014 (516)
2013 (351)
2026 (346)
2012 (329)
2011 (295)
2010 (229)
2009 (145)
2008 (78)
2007 (51)
2006 (19)
2005 (15)
2004 (9)
2003 (3)
2002 (1)

Location

Australia (4)
Japan (2)
China (1)
Denmark (1)
France (1)
Germany (1)
Israel (1)
Italy (1)
Kazakhstan (1)
Singapore (1)
South Korea (1)
Spain (1)
Turkey (1)
United States (1)

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Identification of circulating protein biomarkers for pancreatic cancer cachexia

PRJNA489371 | ENA

Integrative analysis of DNA methylation and inflammatory protein biomarkers in hypertension

PRJNA1390218 | ENA

Analysis of novel plasma protein biomarkers in sepsis using DIA mass spectrometry

This study used DIA mass spectrometry to identify novel plasma protein biomarkers for sepsis, aiming to search for new diagnostic targets for sepsis and after administration of atorvastatin and vitamin D.

ORGANISM(S): Mus musculus (Mouse)

2026-04-13 | PXD060677 | Pride

Evaluation of Peripheral Blood Protein Biomarkers for Colorectal Cancer Screening

The aim of the study is to validate the value of value of peripheral blood protein biomarkers in colorectal cancer screening, and to identify new ones

2746787 | ecrin-mdr-crc

Protein-coding and MicroRNA Biomarkers of Recurrence of Prostate Cancer Following Radical Prostatectomy

This SuperSeries is composed of the following subset Series: GSE26022: [Gene Expression Training Set] Protein-coding and MicroRNA Biomarkers of Recurrence of Prostate Cancer Following Radical Prostatectomy GSE26242: [Gene Expression Validation Set] Protein-coding and MicroRNA Biomarkers of Recurrenc...

ORGANISM(S): Homo sapiens

2011-06-01 | E-GEOD-26367 | biostudies-arrayexpress

UMCC 003 Cancer-Related Protein Biomarkers in Blood and Tumor Tissue of Patients With Cancer

RATIONALE: Studying samples of blood and tumor tissue in the laboratory from patients with cancer and blood from healthy participants may help doctors learn more about changes that may occur in DNA and identify biomarkers related to cancer. PURPOSE: This laboratory study is looking at cancer-related...

2072186 | ecrin-mdr-crc

Proteomics of Primary Uveal Melanoma:Insights to Metastasis and Protein Biomarkers

Uveal melanoma metastases are lethal and remain incurable. Quantitative proteomic analysis of 53 metastasizing and 47 non-metastasizing primary uveal melanoma (pUM) was pursued for insights into UM metastasis and protein biomarkers. The metastatic status of the pUM specimens was defined based on cli...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2021-05-15 | MSV000087437 | MassIVE

Identification of circulating protein biomarkers for pancreatic cancer cachexia

Over 80% of patients with pancreatic ductal adenocarcinoma (PDAC) suffer from cachexia, characterized by severe muscle and fat loss and yet, there are no biomarkers identified for this debilitating condition. Our objective was to identify circulating protein biomarkers using serum for human PDAC cac...

ORGANISM(S): Homo sapiens

2020-12-31 | GSE119483 | GEO

Detection of candidate ovarian cancer protein biomarkers in sera using a multiplexed targeted mass spectrometry assay

Ovarian cancer is the most lethal gynecologic malignancy in women, and high-grade serous ovarian cancer (HGSOC) is the most common subtype. Currently, no clinical test has been approved by the FDA to screen the general population for ovarian cancer. This underscores the critical need for the develop...

ORGANISM(S): Homo sapiens (Human)

2024-01-26 | PXD047188 | Pride

High-grade serous ovarian cancer (hgsoc) Insulin-like growth factor-binding protein 2 (ibp2) Serum Parallel reaction monitoring (prm) Diagnostic biomarkers

Protein-coding and MicroRNA Biomarkers of Recurrence of Prostate Cancer Following Radical Prostatectomy

PRJNA136889 | ENA

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