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MetabolomicsMarine metabolomics: measurement of metabolites in seawater by gas chromatography mass spectrometry (Cell culture sampling)

One of the major bottlenecks in describing marine ecosystems is characterizing the metabolome of seawater, as salt prevents metabolite analysis. We present SeaMet, a method that can detect hundreds of metabolites in less than one ml of seawater and quantifies them down to nano-molar levels using ...

2019-11-15 | MTBLS843 | MetaboLights
MetabolomicsRapid Evaporative Ionisation Mass Spectrometry (REIMS) Provides Accurate Direct from Culture Species Identification within the Genus Candida
Members of the genus Candida, such as C. albicans and C. parapsilosis, are important human pathogens. Other members of this genus, previously believed to carry minimal disease risk, are increasingly recognised as important human pathogens, particularly because of variations in susceptibilities to wi...
2017-11-01 | MTBLS383 | MetaboLights
TranscriptomicsEscherichia coli planktonic cultures: mono-species culture vs. mixed-species culture
Transcription profile of Escherichia coli cells in mono-species pure planktonic cultures was compared to that of E. coli cells in E. coli-Stenotrophomonas maltophilia dual-species planktonic cultures E. coli cells were separated from dual-species planktonic cultures before total RNA extraction to el...
ORGANISM(S): Escherichia coli K-12 
2013-12-30 | E-GEOD-24913 | biostudies-arrayexpress
TranscriptomicsNovel isolation strategy to deliver pure fetal-origin and maternal- origin mesenchymal stem cell (MSC) populations from human term placenta
The placenta is an abundant source of mesenchymal stem/stromal cells (MSC). Although presumed of translationally-advantageous fetal origin, the literature instead suggests a high incidence of either contaminating or pure maternal MSC. Despite definitional criteria that MSC are CD34ÌÛ, increasing evi...
ORGANISM(S): Homo sapiens 
2018-12-01 | E-MTAB-3229 | biostudies-arrayexpress
TranscriptomicsBES performance of S. oneidensis pure- and co-culture
Bioelectrochemical systems employing mixed microbial communities as biocatalysts are gaining importance as potential renewable energy, bioremediation, or biosensing devices. While we are beginning to understand how individual microorganism species interact with an electrode as electron donor, not mu...
ORGANISM(S): Shewanella oneidensis MR-1 
2010-12-01 | E-GEOD-20343 | biostudies-arrayexpress
TranscriptomicsResponse of L. lactis faced to S. cerevisiae
The response of L. lactis to the presence of S. cerevisiae was analyzed during the exponential growth phase in fermentors in defined growth conditions. Although no growth kinetic difference was observed between the pure and mixed culture of L. lactis, the mRNA level of genes was significantly modifi...
ORGANISM(S): Lactococcus lactis 
2010-05-18 | E-GEOD-9436 | biostudies-arrayexpress
TranscriptomicsEscherichia coli biofilm: mono-species culture vs. mixed-species culture
Transcription profile of Escherichia coli cells in mono-species pure biofilms was compared to that of E. coli cells in E. coli-Stenotrophomonas maltophilia dual-species biofilms. E. coli cells were separated from dual-species biofilms before total RNA extraction to eliminate possible cross hybridiza...
ORGANISM(S): Escherichia coli K-12 
2013-12-30 | E-GEOD-24912 | biostudies-arrayexpress
GenomicsAmycolatopsis sp. A24 isolate:pure culture
Amycolatopsis sp. A24 isolate:pure culture Genome sequencing
PRJNA1176039 | ENA
TranscriptomicsMixed Culture Gene Expression of E. coli and Pseudomonas aeruginosa grown on defined media with N-acetyl glucosamine
Transcriptional profiles of Escherichia coli MG1655 in mixed culture with Pseudomonas aeruginosa PAO1 showed a number of E. coli genes to be upregulated including purA-F and other genes associated with purine synthesis. In contrast, genes associated with pyrimidine synthesis were unaffected. Competi...
ORGANISM(S): Escherichia coli str. K-12 substr. MG1655 
2011-11-29 | E-GEOD-26932 | biostudies-arrayexpress
TranscriptomicsIdentifying genes of Escherichia coli involved in interactions with Stenotrophomonas maltophilia in planktonic cultures and biofilms using transcriptomic analysis
Biofilm formation by Escherichia coli was significantly inhibited when co-cultured with Stenotrophomonas maltophilia in static systems. Genes of E. coli involved in species interactions with S. maltophilia were identified in order to allow the study of the mechanisms of inhibited E. coli biofilm for...
ORGANISM(S): Escherichia coli K-12 
2013-12-30 | E-GEOD-24915 | biostudies-arrayexpress
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