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ProteomicsRBDmap analysis of adult and puberty mouse testis
Mass spectrometry data of RBDmap assay for adult and four week old mouse testis respectively.
ORGANISM(S): Mus musculus (Mouse) 
2025-10-29 | PXD043242 | Pride
Rna binding region  mouse  testis  spermatogenesis  rbdmap  proteomics 
ProteomicsRBDmap - Comprehensive Identification of RNA-Binding Domains in Human Cells
The RNA interactomes of HeLa and HEK293 cells jointly comprise 1106 RNA-binding proteins (RBPs), with almost half of these lacking well-defined RNA-binding domains (RBDs), suggesting the existence of numerous unknown RNA-binding architectures. Here, we report on “RBDmap”, a new method built on inter...
ORGANISM(S): Homo sapiens (Human) 
2016-08-08 | PXD000883 | Pride
Rna binding domain Rna-binding proteins 
ProteomicsRBDmap - The Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease
RBDmap protein regions contacting RNA were crosslinked with UV and captured with oligodT beads
ORGANISM(S): Mus musculus (Mouse) 
2016-08-17 | PXD002543 | Pride
Rna-binding proteins 
UnknownComprehensive Identification of RNA-Binding Domains in Human Cells.
Not available
S-EPMC5003815 | biostudies-literature
UnknownThe Cardiomyocyte RNA-Binding Proteome: Links to Intermediary Metabolism and Heart Disease.
Not available
S-EPMC4977271 | biostudies-literature
ProteomicsUV-crosslinking mapping of LARP6 interaction sites with RNA
To map the regions of LARP6 that interacts directly with RNA, we developed a mass spectrometry-based approach termed IP-OOPS (Immunoprecipitation coupled with Orthogonal Organic Phase Separation. This approach combines the isolation of UV-C crosslinked RNA–protein adducts via Orthogonal Organic Phas...
ORGANISM(S): Homo sapiens (Human) 
2026-01-22 | PXD064029 | Pride
Lc-ms/ms  rna-protein interactions  organic phase separation  rna crosslinking 
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