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Other
(844)
Unknown
(833)
Proteomics
(288)
Genomics
(150)
Transcriptomics
(103)
Models
(5)
Metabolomics
(4)
Multiomics
(4)
Methylation profiling
(1)
Organisms
Homo sapiens
(110)
Mus musculus
(43)
Nicotiana benthamiana
(25)
Rattus norvegicus
(9)
Staphylococcus aureus
(5)
Arabidopsis thaliana
(4)
Gallus gallus
(3)
Danio rerio
(3)
Cyanobacteriota
(3)
Metazoa
(3)
Musculus
(3)
Theobroma cacao
(3)
Escherichia coli
(2)
Gossypium
(2)
Selaginella uncinata
(2)
Solanum tuberosum
(2)
unidentified
(2)
Prunus persica
(1)
Hordeum vulgare subsp. vulgare
(1)
Severe acute respiratory syndrome coronavirus 2
(1)
Rhodococcus qingshengii
(1)
Curtobacterium flaccumfaciens
(1)
Bacillus toyonensis
(1)
Microbacterium foliorum
(1)
Equus caballus
(1)
Salmo salar
(1)
synthetic construct
(1)
Bos taurus
(1)
Bacillus subtilis
(1)
Celtis occidentalis
(1)
Organisms
Homo sapiens
(61)
Mus musculus
(37)
Rattus norvegicus
(7)
Danio rerio
(4)
Gallus gallus
(2)
Equus caballus
(1)
Salmo salar
(1)
Repository
MassIVE
(446)
GPMDB
(375)
pride
(270)
ENA
(147)
geo
(93)
LINCS
(23)
biostudies-arrayexpress
(16)
iProX
(9)
EVA
(7)
BioModels
(3)
MetaboLights
(3)
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(1)
FAIRDOMHub
(1)
GNPS
(1)
Tissue
Cell culture
(53)
Epithelial cell
(24)
Brain
(20)
Liver
(14)
Blood
(13)
Blood plasma
(13)
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(11)
Blood serum
(10)
Colon
(10)
Permanent cell line cell
(10)
Blood cell
(9)
Heart
(7)
Lung
(7)
T cell
(7)
B cell
(6)
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(6)
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(5)
Monocyte
(5)
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(5)
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(4)
Embryonic stem cell
(4)
Extracellular vesicle
(4)
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(4)
Mucosal invariant T cell
(4)
Neuron
(4)
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(4)
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(3)
Cell suspension culture
(3)
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(3)
Intestine
(3)
Disease
Not Available
(375)
Breast cancer
(15)
Colon cancer
(7)
Disease free
(7)
Lymphoma
(5)
Acute leukemia
(4)
Severe acute respiratory syndrome
(4)
Parkinson's disease
(3)
Wounds and Injuries
(3)
Alzheimer's disease
(2)
COVID-19
(2)
Cardiovascular system disease
(2)
Chronic obstructive pulmonary disease
(2)
Gastric adenocarcinoma
(2)
Kidney cancer
(2)
Osteoarthritis
(2)
Pancreatic cancer
(2)
Schizophrenia
(2)
Type 2 diabetes mellitus
(2)
Ulcerative colitis
(2)
Urinary bladder cancer
(2)
Abnormality of prenatal development or birth
(1)
Acute kidney failure
(1)
Amyotrophic lateral sclerosis
(1)
Aniridia
(1)
Atherosclerosis
(1)
Barrett's esophagus
(1)
Beta thalassemia
(1)
Huntington Disease
(1)
Simpson-Golabi-Behmel syndrome type 1
(1)
Technology Type
Mass Spectrometry
(270)
Shotgun proteomics
(123)
Bottom-up proteomics
(93)
Data-dependent acquisition
(42)
Data-independent acquisition
(28)
SWATH MS
(19)
Mass spectrometry
(14)
Gel-based experiment
(10)
Top-down proteomics
(10)
HDMSE
(7)
GCP
(6)
DiaPASEF
(6)
Affinity purification coupled with mass spectrometry proteomics
(5)
P100
(4)
Whole Genome Sequencing
(3)
DNA sequencing
(3)
Fluorescence intensity
(3)
KINOMEscan
(3)
QPCR
(3)
RNA-seq
(3)
Shotgun-MS
(2)
Mass spectrometry assay
(2)
All-ion fragmentation
(2)
Mass spectrometry imaging
(2)
Cellarium
(1)
Fluorescence imaging
(1)
KiNativ
(1)
MEMA
(1)
SWATH-MS
(1)
NMR spectroscopy
(1)
Instrument Platform
Instrument
(375)
Q Exactive
(80)
QE Exactive
(35)
Q Exactive HF
(34)
MaXis
(25)
Q Exactive Plus
(20)
LTQ Orbitrap Velos
(11)
6540 Q-TOF LC/MS
(9)
6560 Q-TOF LC/MS
(9)
LTQ Orbitrap Elite
(9)
Impact
(8)
Impact II
(7)
Xevo G2 Q-Tof
(7)
6550 iFunnel Q-TOF LC/MS
(6)
Orbitrap Fusion
(6)
Orbitrap Fusion Lumos
(6)
Orbitrap ID-X
(6)
Xevo G2-S QTof
(6)
Synapt G2 HDMS
(5)
Illumina HiSeq 2500
(3)
-
(3)
Illumina HiSeq 2000
(2)
Genomics Core Shared Resources at Augusta University (RRID: SCR_026483)
(1)
RNeasy Mini Kit (Qiagen)
(1)
GentleMACS Octo Dissociator with Heaters (Miltenyi Biotec, Cat. No. 130-096-427) together with the Human Tumor Dissociation Kit (Miltenyi Biotec, Cat. No. 130-095-929),
(1)
Illumina NovaSeq 6000
(1)
Illumina HiSeq 4000
(1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000
(1)
Illumina
(1)
Unspecified
(1)
Publication Date
2022
(183)
2021
(143)
2019
(112)
2018
(90)
2025
(84)
2026
(71)
2024
(56)
2023
(43)
2020
(32)
2015
(15)
2017
(15)
2016
(12)
2014
(5)
2013
(2)
2012
(2)
2008
(2)
2011
(2)
UNIPROT ID/AC
P29803
(1)
P30613
(1)
P36871
(1)
Q02742
(1)
P06744
(1)
P21399
(1)
Q99798
(1)
P06733
(1)
P09104
(1)
P49247
(1)
P13929
(1)
Q16836
(1)
P30084
(1)
O75251
(1)
P35573
(1)
Q01581
(1)
O00757
(1)
P09467
(1)
P54868
(1)
P53597
(1)
Q9P2R7
(1)
P51649
(1)
O14521
(1)
P19367
(1)
P52789
(1)
P00505
(1)
P14410
(1)
O75874
(1)
Q9BWD1
(1)
P24752
(1)
CHEBI ID
CHEBI:30915
(3)
CHEBI:15741
(3)
CHEBI:18012
(3)
CHEBI:30769
(3)
CHEBI:16551
(3)
CHEBI:28938
(2)
CHEBI:17544
(2)
CHEBI:17053
(2)
CHEBI:30887
(2)
CHEBI:9532
(2)
CHEBI:422
(2)
CHEBI:36218
(2)
CHEBI:29042
(2)
CHEBI:18420
(2)
CHEBI:4170
(2)
CHEBI:15471
(2)
CHEBI:30744
(2)
CHEBI:4167
(2)
CHEBI:16347
(2)
CHEBI:16015
(2)
CHEBI:15378
(2)
CHEBI:17378
(2)
CHEBI:48928
(2)
CHEBI:29888
(2)
CHEBI:32805
(2)
CHEBI:15344
(2)
CHEBI:17877
(2)
CHEBI:15682
(2)
CHEBI:15380
(2)
CHEBI:15345
(2)
Metabolite Name
2-Aminobutyrate
(1)
2-Aminoethyl Oleate
(1)
7z,11z,13e-Hexadecatrienal
(1)
5-(1-Hydroxypropan-2-Yl)Isolongifol-4-Ene
(1)
1-O-(2r-Hydroxy-4z-Pentadecenyl)-Sn-Glycerol
(1)
1-(5-Fluoropentyl)-3-(2-Iodobenzoyl)Indole
(1)
Mg(18:2(9z,12z)/0:0/0:0)[Rac]
(1)
Palmitoleoyl-Ea
(1)
8e,10e-Tetradecadien-1-Ol
(1)
PE(22:5(7Z,10Z,13Z,16Z,19Z)/0:0)
(1)
4-[(2,4-Dihydroxyphenyl)Azo]Benzenesulfonic Acid
(1)
Berkeleylactone G
(1)
5alpha-Cholest-22e-En-3beta-Ol
(1)
6-[1]-Ladderane Hexanol
(1)
Salvianolic Acid D
(1)
PS(O-20:0/17:0)
(1)
6,11-Hexadecadienal
(1)
Indoleacrylic Acid
(1)
6r,7s-Epoxy-3z,9z-Eicosadiene
(1)
PC(18:0/18:2(10Z,12Z))
(1)
PC(18:1(17Z)/18:1(17Z))
(1)
2e,13z-Octadecadienal
(1)
Linoleyl Hydroxamic Acid
(1)
17-Hydroxy Stearic Acid
(1)
Deoxycholic Acid Glycine Conjugate
(1)
SM(d17:1/24:1)
(1)
4-(dimethylamino)-Benzaldehyde
(1)
Oxotremorine
(1)
Termitomycesphin C
(1)
O-Acetylcholine
(1)
First Public Date
2025
(30)
2026
(23)
2022
(22)
2021
(20)
2023
(13)
2020
(13)
2024
(10)
2019
(5)
2018
(4)
2017
(3)
2014
(2)
2016
(1)
2015
(1)
Modelling Approach
Constraint-based model
(2)
Ordinary differential equation model
(1)
Lab affiliation
Instituto de Investigaciones Sanitarias de Santiago de Compostela
(5)
Cellular Proteomics, Helmholtz Centre for Infection Research, Braunschweig, Germany
(4)
Aalborg University
(2)
Center of Excellence in Systems Biology, Research Affairs, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand
(2)
Department of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, United States
(2)
NICM HRI, Western Sydney University, NSW, Australia
(2)
Peking Union Medical College
(2)
University of Electronic Science and Technology of China
(2)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain.
(1)
1. Laboratório de Neurofisiologia, Departamento de Ciências Fisiológicas, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro (UERJ), Av. Prof. Manuel de Abreu 444, 5 andar – Vila Isabel, Rio de Janeiro, RJ, 20550-170, Brazil.
(1)
1.Precision Vaccines Program, Division of Infectious Diseases, Boston Children’s Hospital, Boston, MA, USA. 2. Department of Pediatrics, Harvard Medical School, Boston, MA, USA.
(1)
1Institute for Genetics, University of Cologne, Cologne, Germany. 2Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany. 3Center for Molecular Medicine (CMMC), University of Cologne, Cologne, Germany.
(1)
1Research Institute of the McGill University Health Centre, Montreal, QC, Canada 2Department of Pathology, McGill University, Montreal, QC, Canada 3Gerald Bronfman Department of Oncology, McGill University, Montreal, QC, Canada
(1)
1Thoracic and Gastrointestinal Oncology Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD, USA
(1)
Affiliated Chuzhou Hospital of Anhui Medical University
(1)
Associate Professor, Stem Cells and Regenerative Medicine Centre, Yenepoya Research Centre, Yenepoya (Deemed to be University), Deralakatte, Mangalore, Karnataka (State),India (C)
(1)
Basilbiotech, Incheon, Republic of Korea
(1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University of Munich (TUM) Gregor-Mendel-Str. 4 85354 Freising Germany
(1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY
(1)
Biochemistry III, Department of Chemistry, Bielefeld University, Universitätsstr. 25, 33615 Bielefeld, Germany
(1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada
(1)
Biomedicine Discovery Institute, Infection Program, Department of Microbiology, Monash University, Clayton, Victoria, Australia
(1)
CENTD, Instituto Butantan
(1)
CNIO
(1)
Catholic University of the Sacred Heart
(1)
Cell culture technology, Technical Department, Bielefeld University, Bielefeld, Germany
(1)
Cellular and Molecular Immunology Research Unit (CMIRU), Faculty of Allied Health Science, Naresuan University, Phitsanulok, 65000, Thailand
(1)
Cellular and Molecular Immunology Research Unit (CMIRU), Faculty of Allied Health Sciences, Naresuan University, Phitsanulok, 65000, Thailand
(1)
Cellular and Molecular Immunology Research Unit (CMIRU), Faculty of Allied Health Sciences, Naresuan University, Phitsanulok, Thailand
(1)
Center Leader Proteomics Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technical University Munich (TUM) Gregor-Mendel-Straße 4 85354 Freising GERMANY
(1)
Tags
xref:PubMed:42388349
(2)
xref:PubMed:34082066
(2)
xref:PubMed:36229976
(1)
xref:ArrayExpress:E-MTAB-41102
(1)
xref:PubMed:33771899
(1)
xref:PubMed:35323110
(1)
xref:PubMed:35984863
(1)
xref:PubMed:33378678
(1)
xref:PubMed:33942030
(1)
xref:PubMed:32334376
(1)
xref:PubMed:39980707
(1)
xref:PubMed:41946794
(1)
xref:PubMed:29250102
(1)
xref:PubMed:29050494
(1)
xref:PubMed:39893009
(1)
xref:PubMed:34970146
(1)
xref:PubMed:32169846
(1)
xref:PubMed:37034482
(1)
xref:PubMed:33148325
(1)
xref:PubMed:41188932
(1)
xref:PubMed:41348119
(1)
xref:PubMed:33256611
(1)
xref:PubMed:32327684
(1)
xref:PubMed:37965787
(1)
xref:PubMed:35386820
(1)
xref:PubMed:36614016
(1)
xref:PubMed:41226671
(1)
xref:PubMed:36709757
(1)
xref:PubMed:39683640
(1)
xref:PubMed:34667245
(1)
IsPrivate
False
(3)
Model Flag
Non Kinetic
(1)
Submitter Keywords
FROG
(1)
Modification
4'-dihydroxyphenylalanine
(1)
4-tetrahydrothiazine-3-carboxylic acid
(1)
Study type
Transcription profiling by array
(9)
RNA-seq of coding RNA
(6)
RNA-seq of total RNA
(1)
Release Date
2022
(147)
2025
(112)
2023
(109)
2021
(105)
2024
(87)
2020
(76)
2019
(43)
2018
(40)
2016
(23)
2017
(23)
2015
(13)
2026
(12)
2012
(11)
2013
(10)
2011
(10)
2014
(9)
2010
(6)
2008
(5)
2009
(4)
2007
(2)
2006
(1)
2005
(1)
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Reactome Pengine: a web-logic API to the Homo sapiens reactome.
Not available
S-EPMC6084589
|
biostudies-literature
Cite
Reactome from a WikiPathways Perspective.
Not available
S-EPMC4874630
|
biostudies-literature
Cite
Using the reactome database.
Not available
S-EPMC3427849
|
biostudies-literature
Cite
The Reactome pathway Knowledgebase.
Not available
S-EPMC4702931
|
biostudies-literature
Cite
Reactome enhanced pathway visualization.
Not available
S-EPMC5860170
|
biostudies-literature
Cite
Reactome: a knowledgebase of biological pathways.
Not available
S-EPMC540026
|
biostudies-literature
Cite
The Reactome Knowledgebase 2026.
Not available
S-EPMC12807730
|
biostudies-literature
Cite
ChatGPT usage in the Reactome curation process.
Not available
S-EPMC10659344
|
biostudies-literature
Cite
The reactome pathway knowledgebase 2022.
Not available
S-EPMC8689983
|
biostudies-literature
Cite
Reactome: a knowledge base of biologic pathways and processes.
Not available
S-EPMC1868929
|
biostudies-literature
Cite
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