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ProteomicsIdentification of PNPase and RhlB binding proteins in Deinococcus radiodurans
8-oxo-7,8-dihydroguanine (8-oxoG) is a common RNA oxidation that has been implicated in carcinogenesis, neurodegeneration, and aging. Some? Many? RNA-binding proteins have shown binding preference for 8-oxoG modified RNA; such binding? can protect cells from oxidative stress. To date, the presence o...
ORGANISM(S): Deinococcus radiodurans ATCC 13939 
2022-07-09 | PXD028866 | Pride
8-oxo-7 8-dihydroguanine  rna oxidation  rna binding proteins  pnpase  rhlb  oxidative stress  deinococcus radiodurans  rna degradation 
GenomicsWT, ∆rhlB and ∆rppH mRNA half-life profiling.
WT, ∆rhlB and ∆rppH mRNA half-life profiling.
PRJNA950407 | ENA
TranscriptomicsWT, ∆rhlB and ∆rppH mRNA half-life profiling.
WT, ∆rhlB and ∆rppH strains were globally profiled for mRNA half-lives using rifampicin treatment followed by RNA-seq. Wild type(WT) was compared to ∆rhlB (deleted RNA helicase RhlB gene) and ∆rppH (deleted RppH gene) strains
ORGANISM(S): Caulobacter vibrioides 
2023-04-03 | GSE228592 | GEO
TranscriptomicsTrasncript abundance alters by RhlB P238L mutation
PNPase, one of the major enzymes with 3ʹ-to-5ʹ single-stranded RNA (ssRNA) degradation and processing activities, can interact with the RNA helicase RhlB independent of RNA degradosome formation in E. coli. Here we report that loss of interaction between RhlB and PNPase impacts cysteine homeostasis ...
ORGANISM(S): Escherichia coli 
2015-11-10 | GSE57784 | GEO
UnknownRecognition and cooperation between the ATP-dependent RNA helicase RhlB and ribonuclease RNase E.
Not available
S-EPMC7610992 | biostudies-literature
ProteomicsIdentification of 8-oxoG binding proteins in Deinococcus radiodurans
8-oxo-7,8-dihydroguanine (8-oxoG) is a common RNA oxidation that has been implicated in carcinogenesis, neurodegeneration, and aging. Some? Many? RNA-binding proteins have shown binding preference for 8-oxoG modified RNA; such binding? can protect cells from oxidative stress. To date, the presence o...
ORGANISM(S): Deinococcus radiodurans ATCC 13939 
2022-07-10 | PXD028861 | Pride
8-oxo-7 8-dihydroguanine  rna oxidation  rna binding proteins  pnpase  rhlb  oxidative stress  deinococcus radiodurans  rna degradation 
UnknownPNPase and RhlB Interact and Reduce the Cellular Availability of Oxidized RNA in Deinococcus radiodurans.
Not available
S-EPMC9430589 | biostudies-literature
UnknownRhlB helicase rather than enolase is the beta-subunit of the Escherichia coli polynucleotide phosphorylase (PNPase)-exoribonucleolytic complex.
Not available
S-EPMC1277965 | biostudies-literature
Genomics
Impact of RhlB helicase on Caulobacter crescentus transcriptome
PRJNA954892 | ENA
UnknownMolecular recognition of RhlB and RNase D in the Caulobacter crescentus RNA degradosome.
Not available
S-EPMC4245959 | biostudies-literature
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