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GenomicsSystematic discovery of endogenous human ribonucleoprotein complexes
Systematic discovery of endogenous human ribonucleoprotein complexes
PRJNA566149 | ENA
TranscriptomicsIdentification of Neuronal RNA Targets of TDP-43-Containing Ribonucleoprotein Complexes
We identify the RNA targets of TAR DNA-binding protein 43 (TDP-43) from cortical neurons by RNA immunoprecipitation followed by deep sequencing (RIP-seq). We identify 4352 highly enriched RNA targets of TDP-43. We determined that the canonical TDP-43 binding site (TG)n was 55.1-fold enriched in our ...
ORGANISM(S): Rattus norvegicus 
2010-11-04 | E-GEOD-25032 | biostudies-arrayexpress
GenomicsC. elegans DLC-1 is a component of diverse ribonucleoprotein complexes
C. elegans DLC-1 is a component of diverse ribonucleoprotein complexes
PRJNA474476 | ENA
GenomicsSaturating mutagenesis with assembled CRISPR-Cas9 ribonucleoprotein complexes.
Saturating mutagenesis with assembled CRISPR-Cas9 ribonucleoprotein complexes.
PRJEB12161 | ENA
TranscriptomicsRibonucleoprotein immunoprecipitation of fission yeast to study myosin proteins and other cytoskeletal components
Ribonucleoprotein immunoprecipitation microarray (RIp-chip) study using various myosin proteins and other cytoskeletal components from the fission Schizosaccaromyces pombe
ORGANISM(S): Schizosaccharomyces pombe 
2009-09-01 | E-TABM-656 | biostudies-arrayexpress
TranscriptomicsTrf4p in vivo crosslinking and ribonucleoprotein-immunopurification-chip analysis (X-RIP-Chip)
In vivo cross-linking and ribonucleoprotein-immunopurification experiments followed by microarray analysis of bound RNAs (X-RIP-chip). Cells expressing recombinant tandem-affinity purification (TAP)-tagged Trf4 protein were cross-linked with formaldehyde, and Trf4-containing ribonucleoprotein comple...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-24 | E-GEOD-16105 | biostudies-arrayexpress
TranscriptomicsSystematic discovery of endogenous human ribonucleoprotein complexes
An exploration of human protein complexes in the presence and absence of RNA reveals endogenous ribonucleoprotein complexes
ORGANISM(S): Homo sapiens 
2019-09-19 | GSE137651 | GEO
GenomicsSaturating mutagenesis with assembled CRISPR-Cas9 ribonucleoprotein complexes.
The CRISPR-Cas9 system enables efficient sequence-specific mutagenesis for creating germline mutants of model organisms. Key constraints in vivo remain the expression and delivery of active Cas9-guideRNA ribonucleoprotein complexes (RNPs) with minimal toxicity, variable mutagenesis efficiencies depe...
ORGANISM(S): Danio rerio 
2016-05-01 | E-MTAB-4143 | biostudies-arrayexpress
TranscriptomicsIdentification of TDP-43 and FUS mRNA targets and pathways in the cytoplasmic compartment of motorneuronal cells NSC34
We performed RNA immunoprecipitation (IP) and microarray (RIP-chip) analyses to identify and compare the biological mRNA targets of two RNA-binding protein (RBP), TDP-43 and FUS, associated to cytoplasmic ribonucleoprotein (RNP) complexes of motoneuronal NSC34 cells with the final aim to unravel the...
ORGANISM(S): Mus musculus 
2011-10-21 | E-GEOD-33159 | biostudies-arrayexpress
GenomicsG3BP1 Ribonucleoprotein Complexes Regulate Focal Adhesion Protein Mobility and Cell Migration [RNA-seq]
G3BP1 Ribonucleoprotein Complexes Regulate Focal Adhesion Protein Mobility and Cell Migration [RNA-seq]
PRJNA1033345 | ENA
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