sci - OmicsDI

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UNIPROT ID/AC

P35567 (4)
P04551 (3)
P24033 (3)
P62755 (3)
Q63484 (3)
Q9XFM0 (2)
Q940U6 (2)
Q9WTS1 (2)
P07522 (2)
Q90W58 (2)
Q05116 (2)
P26696 (2)
P47817 (1)
P30311 (1)
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ENSEMBL ID

ENSDARG00000000103 (16)
ENSDARG00000001431 (16)
ENSDARG00000001915 (16)
ENSDARG00000001950 (16)
ENSDARG00000001993 (16)
ENSDARG00000002480 (16)
ENSDARG00000005039 (16)
ENSDARG00000005560 (16)
ENSDARG00000005791 (16)
ENSDARG00000006399 (16)
ENSDARG00000007219 (16)
ENSDARG00000009285 (16)
ENSDARG00000009484 (16)
ENSDARG00000010149 (16)
ENSDARG00000010478 (16)
ENSDARG00000013078 (16)
ENSDARG00000016301 (16)
ENSDARG00000016393 (16)
ENSDARG00000017014 (16)
ENSDARG00000017624 (16)
ENSDARG00000018404 (16)
ENSDARG00000020008 (16)
ENSDARG00000021124 (16)
ENSDARG00000022767 (16)
ENSDARG00000023323 (16)
ENSDARG00000024746 (16)
ENSDARG00000025012 (16)
ENST00000403290 (1)
ENST00000008527 (1)
ENST00000317276 (1)

CHEBI ID

CHEBI:30769 (129)
CHEBI:15741 (112)
CHEBI:15428 (112)
CHEBI:16704 (97)
CHEBI:16335 (97)
CHEBI:28044 (94)
CHEBI:18012 (94)
CHEBI:16811 (92)
CHEBI:27897 (92)
CHEBI:17368 (92)
CHEBI:17351 (49)
CHEBI:16761 (49)
CHEBI:15422 (38)
CHEBI:15355 (28)
CHEBI:29108 (4)
CHEBI:16595 (2)
CHEBI:35923 (1)
CHEBI:23530 (1)
CHEBI:49603 (1)
CHEBI:32906 (1)
CHEBI:29590 (1)
CHEBI:29605 (1)
CHEBI:32902 (1)
CHEBI:30088 (1)
CHEBI:144829 (1)
CHEBI:16905 (1)
CHEBI:17665 (1)
CHEBI:16084 (1)
CHEBI:17925 (1)
CHEBI:18283 (1)

Metabolite Name

L-Tyrosine (63)
Hypoxanthine (61)
Creatinine (60)
Creatine (59)
Inosine (58)
Adenosine (57)
Choline (55)
Adenine (55)
Uridine (55)
L-Phenylalanine (55)
Glycine (52)
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Threonine (42)

First Public Date

2023 (1201)
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2014 (176)
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2015 (24)
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Modelling Approach

Ordinary differential equation model (53)
Constraint-based model (2)
Boolean model (1)
Stochastic differential equation model (1)
Delayed differential equation model (1)

Lab affiliation

EDyP (20)
CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France (14)
University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (13)
Head of the Curie Institute Mass Spectrometry Platform (12)
Vanderbilt University (12)
University of Bristol (11)
Ruhr University Bochum, Germany (10)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (9)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (9)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (9)
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Department for Biochemistry, Max F. Perutz Laboratories, University of Vienna, Dr. Bohr-Gasse 9, A-1030 (7)
Imperial College London (7)
Institute of Molecular Systems Biology, ETH Zurich, 8093 Zurich, Switzerland Faculty of Science, University of Zurich, Zurich, Switzerland (7)
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School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (7)
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ETH Zurich, Institute of Molecular Systems Biology (6)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (6)
Head of Proteomics (6)
Instituto de Biotecnología, Grupo de Bioquímica y Parasitología Molecular, Departamento de Parasitología, Universidad de Granada, Granada, Spain. (6)
Laboratoire de Spectrométrie de Masse BioOrganique, Analytical Science department, IPHC, CNRS, Strasbourg University, UMR7178, Strasbourg, France (6)
Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München (6)
Medical University of Vienna (6)
BioArCh, University of York, UK (5)
Center for Reproductive Evolution, Biology Department, Syracuse University (5)
Helmholtz-Centre for Environmental Research - UFZ (5)

IsPrivate

False (57)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (1)

Classification

bacteria (51)
viruses (15)
fungi (13)
protozoa (4)

Modification

Not available (14)
2x(15)N labeled L-lysine (13)
4x(15)N labeled L-arginine (13)
15.994915 (8)
57.021464 (8)
4-tetrahydrothiazine-3-carboxylic acid (7)
79.966331 (4)
N6 (3)
N6-dimethyl-L-lysine (3)
-17.026549 (2)
4-dinitrophenyl modified residue (2)
58.005479 (2)
-18.010565 (1)
0.984 (1)
10.008269 (1)
15.9949 (1)
15.99491 (1)
27.994915 (1)
42.010565 (1)
4x(2)H labeled dimethylated L-lysine (1)
4x(2)H labeled dimethylated residue (1)
57.02146 (1)
57.0215 (1)

Study type

Transcription profiling by array (2981)
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Other (110)
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Escherichia coli SCI-07

Escherichia coli SCI-07 Genome sequencing and assembly

PRJNA82801 | ENA

PROTEOMIC IDENTIFICATION OF SYSTEMIC BIOMARKERS IN RAT MODELS OF SPINAL CORD INJURY

Biomarkers to more accurately determine severity and prognosis following spinal cord injury (SCI) are needed to ensure that patients are assigned to the most suitable treatment and rehabilitation regimes. This study aimed to characterise the blood proteome following SCI in clinical rat injury models...

ORGANISM(S): Rattus norvegicus (Rat)

2022-05-19 | PXD021137 | Pride

Targeted NEFA in Kallikrein 6 Mice after SCI

Not available

ORGANISM(S): Mus musculus

ST000856 | MetabolomicsWorkbench

Large Untargeted Profiling in Kallikrein 6 Mice after SCI

Not available

ORGANISM(S): Mus musculus

ST000869 | MetabolomicsWorkbench

Targeted Sphingomyelin Concentrations in Kallikrein 6 Mice after SCI

Not available

ORGANISM(S): Mus musculus

ST000860 | MetabolomicsWorkbench

Targeted FFA Composition in Kallikrein 6 Mice after SCI

Not available

ORGANISM(S): Mus musculus

ST000854 | MetabolomicsWorkbench

Differential gene expression following SCI in trkB.T1 null

We asked what genes are significantly differentially regulated in the spinal cord of SCI trkB.T1 WT and trkB.T1 KO mice. TrkB.T1 is upregulated shortly after SCI although the precise mechanisms underyling this upregulation are poorly understood. In the trkB.T1 null, we show less mechanical allodynia...

ORGANISM(S): Mus musculus

2015-12-07 | E-GEOD-42828 | biostudies-arrayexpress

Targeted Galactosyl Sphingolipid Concentration in Kallikrein 6 Mice after SCI

Not available

ORGANISM(S): Mus musculus

ST000859 | MetabolomicsWorkbench

Large Untargeted Profiling in PAR1 and PAR2 Mice after SCI

Not available

ORGANISM(S): Mus musculus

ST000866 | MetabolomicsWorkbench

Targeting Myelin Ceramides in PAR1 and PAR2 Mice after SCI

Not available

ORGANISM(S): Mus musculus

ST000864 | MetabolomicsWorkbench

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21273 Results

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