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Unknown (15517)
Transcriptomics (2967)
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Proteomics (409)
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Genomic (3)
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Organisms

Homo sapiens (1322)
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Arabidopsis thaliana (110)
Drosophila melanogaster (82)
Caenorhabditis elegans (41)
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Organisms

Mus musculus (516)
Homo sapiens (360)
Rattus norvegicus (68)
Arabidopsis thaliana (46)
Drosophila melanogaster (39)
Danio rerio (24)
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marine metagenome (8)
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marine sediment metagenome (6)
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Mytilus galloprovincialis (4)
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aquatic metagenome (4)
Dictyostelium discoideum (4)
Xenopus laevis (4)
sediment metagenome (4)
Zea mays (4)
Gossypium hirsutum (4)
human gut metagenome (4)
soil metagenome (4)
marine eukaryotic metagenome (3)

Repository

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geo (1193)
pride (268)
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Dystrophic (1)
Bronchioloalveolar carcinoma of lung (1)
IRAK-4 Q293X mutation (1)
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Papillary thyroid carcinoma (1)
Viral myocarditis (1)

Technology Type

Mass Spectrometry (268)
Shotgun proteomics (156)
Bottom-up proteomics (60)
Data-dependent acquisition (36)
Mass spectrometry (34)
Affinity purification coupled with mass spectrometry proteomics (26)
Data-independent acquisition (25)
SWATH MS (18)
Mass spectrometry assay (16)
Gel-based experiment (12)
Top-down proteomics (9)
NMR spectroscopy (6)
DiaPASEF (5)
SRM/MRM (4)
Illumina HiSeq 2000 (3)
Affinity proteomics (2)
MSE (2)
All-ion fragmentation (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina HumanOmni1-Quad-Illumina GenomeStudio (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, ILLUMINA (1)
HDMSE (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (35)
Illumina HiSeq 2000 (22)
Illumina HiSeq 2500 (15)
Illumina HiSeq 4000 (12)
NextSeq 500 (8)
GenePix 4000B [Axon Instruments] (7)
Affymetrix GeneChip Scanner 3000 7G (6)
NextSeq 550 (6)
2100 Bioanalyzer Agilent (3)
Illumina HiSeq 1000 (3)
Illumina HiSeq 3000 (3)
Beadarray reader (2)
Gene Titan (2)
Intel Core 2 Duo E8500 3.16 GHz or equivalent (2)
AB SOLiD 4 System (2)
GeneChip Scanner 3000 [Affymetrix] (2)
Illumina Genome Analyzer II (2)
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Ion Torrent Proton (2)
Illumina MiSeq (2)
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Chromium Next GEM Single Cell 5' Reagent Kits (10x Genomics) (1)
10xGenomics Chromium 3'v3 (1)
CryoStor® CS10 Freezing Medium (Cat. No. 100-1061; StemCell Technologies) (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
See Description (1)
See Desciption (1)

Publication Date

2014 (352)
2013 (339)
2015 (281)
2012 (260)
2010 (259)
2011 (241)
2016 (217)
2026 (193)
2024 (191)
2025 (182)
2022 (164)
2023 (157)
2021 (138)
2008 (135)
2009 (120)
2017 (115)
2020 (100)
2019 (98)
2018 (93)
2007 (88)
2006 (44)
2005 (29)
2004 (5)
2003 (3)
2002 (1)

UNIPROT ID/AC

D3ZV21 (1)
P42346 (1)
P35570 (1)
P07379 (1)
P09811 (1)
O80536 (1)
Q8L5W8 (1)
Q84LH8 (1)
Q8W2F3 (1)
Q9SNB4 (1)
O04211 (1)
Q6LA42 (1)
P19174 (1)
Q6R0H1 (1)
P92973 (1)
P50148 (1)
P01008 (1)
P10646 (1)
P12259 (1)
P00451 (1)
P00740 (1)
P00742 (1)
P08709 (1)
P13726 (1)
P47197 (1)
P05231 (1)
P00734 (1)
P08887 (1)
Q93WK5 (1)
Q8L500 (1)

ENSEMBL ID

ENSG00000170477 (8)
ENSG00000247315 (6)
ENSMUSP00000141542 (1)
ENSMUSP00000141637 (1)
ENSMUSG00000027651 (1)
ENSMUSG00000021039 (1)
ENSMUSG00000094652 (1)
ENSMUSG00000094546 (1)
ENSMUSG00000076695 (1)
ENSMUSG00000072849 (1)
ENSMUSP00000141097 (1)
ENSMUSG00000098557 (1)

CHEBI ID

CHEBI:30769 (18)
CHEBI:6650 (13)
CHEBI:16027 (12)
CHEBI:17295 (12)
CHEBI:27897 (12)
CHEBI:15741 (12)
CHEBI:16919 (11)
CHEBI:17287 (7)
CHEBI:16761 (7)
CHEBI:16908 (5)
CHEBI:175901 (2)
CHEBI:15361 (2)
CHEBI:17234 (2)
CHEBI:15422 (2)
CHEBI:73623 (1)
CHEBI:40595 (1)
CHEBI:24838 (1)
CHEBI:16452 (1)
CHEBI:26689 (1)
CHEBI:5656 (1)
CHEBI:24996 (1)
CHEBI:16004 (1)
CHEBI:17138 (1)
CHEBI:29101 (1)
CHEBI:29042 (1)
CHEBI:28087 (1)
CHEBI:29108 (1)
CHEBI:18021 (1)
CHEBI:15846 (1)
CHEBI:33699 (1)

Metabolite Name

Creatine (10)
Xanthine (9)
Citric acid (9)
Choline (9)
Hypoxanthine (8)
Inosine (8)
Uridine (8)
Ornithine (7)
Glycocholic acid (7)
Uracil (7)
Glycine (7)
Leucine (7)
Tyrosine (7)
Valine (6)
Indole (6)
Cholic acid (6)
Taurine (6)
Threonine (6)
Thymidine (6)
Succinate (6)
Riboflavin (6)
Asparagine (6)
Isoleucine (6)
Histidine (6)
Cytidine (6)
Pantothenic acid (6)
Adenosine (6)
Cytosine (6)
Taurocholic acid (5)
L-threonine (5)

First Public Date

2014 (301)
2026 (275)
2025 (240)
2024 (237)
2023 (177)
2021 (155)
2022 (150)
2020 (114)
2019 (103)
2017 (98)
2018 (73)
2016 (52)
2015 (49)
2013 (47)
2012 (4)
2011 (3)

Modelling Approach

Ordinary differential equation model (21)
Cellular potts model (3)

Lab affiliation

Institute of Molecular Biology (IMB), 55128 Mainz, Germany; Institute of Developmental Biology and Neurobiology (IDN), Johannes Gutenberg University, 55128 Mainz, Germany (7)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics & Cognitive Research, Neuroscience Campus Amsterdam, VU University, Amsterdam, The Netherlands (6)
Department of Animal and Poultry Sciences and the School of Neuroscience, Virginia Tech, Blacksburg, VA, USA (4)
Department of Biochemistry, University of Oxford (3)
Harvard Medical School (3)
Agriculture and Agrifood Canada Morden Research and Development Centre (2)
Department of Biochemsitry, University of Oxford (2)
Director, Centre for Proteome Research Department of Biochemistry & Systems Biology Institute of Systems, Molecular & Integrative Biology University of Liverpool Crown Street, Liverpool L69 7ZB +44 151 795 4424 (2)
School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, China (2)
Centre for Gene Regulation and Expression University of Dundee (2)
University of East Anglia/John Innes Centre, Norwich, UK (2)
Laboratory of viability of microorganisms, Federal research center “Fundamentals of biotechnology” of Russian Academy of sciences, Moscow, Russia (2)
Agricultural Biotechnology Research Center, Academia Sinica, Taiwan (2)
NIAID, NATIONAL INSTITUTES OF HEALTH (2)
Departments of Biomedical Sciences, Seoul National University, Seoul, Korea (2)
Department of Molecular and Cellular Neurobiology, Center for Neurogenomics and Cognitive Research, Amsterdam Neuroscience, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands (2)
Department of Molecular Biology, Princeton University, USA (2)
Helmholtz-Centre for Environmental Research UFZ GmbH (2)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute for Biomedical Research (2)
Department of Cell Biology, Harvard Medical School (2)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (2)
Laboratory of Vaccines for the Developing World, Institute for Glycomics, Southport, QLD, Australia (1)
Dept. of Biological Chemistry The Alexander Silberman Institute of Life Science The Hebrew University of Jerusalem (1)
Associate Scientific Director, Molecular and Cellular Biology Division of Intramural Research National Institute of Child Health and Human Development / NIH Building 49, Room 5A30 Bethesda, MD 20892 USA (1)
Nencki Institute of Experimental Biology, Polish Academy of Sciences (1)
Leibniz Institute on Aging - Fritz Lipmann Institute (FLI) (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Associate Professor, Centre for Myopia Research, School of Optometry, The Hong Kong Polytechnic University, Hong Kong SAR (1)
Institute of Medical Psychology, LMU Munich, Germany (1)
Instituto de Investigaciones Biomédicas, UNAM. Departamento. Biología Molecular y Biotecnología (1)

IsPrivate

False (24)

Model Flag

Non Kinetic (1)

Submitter Keywords

Immuno-oncology (2)

Classification

bacteria (27)
protozoa (7)
fungi (6)
viruses (2)

Modification

N6 (3)
N6-dimethyl-L-lysine (2)
4-tetrahydrothiazine-3-carboxylic acid (2)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (1380)
RNA-seq of coding RNA (230)
RNA-seq of non coding RNA (155)
MicroRNA profiling by array (45)
ChIP-seq (41)
Unknown experiment type (39)
Other (38)
Comparative genomic hybridization by array (33)
Methylation profiling by array (25)
Transcription profiling by RT-PCR (24)
Methylation profiling by high throughput sequencing (15)
RNA-seq of coding RNA from single cells (13)
ChIP-chip by tiling array (12)
MicroRNA profiling by high throughput sequencing (12)
Transcription profiling by tiling array (9)
Genotyping by array (7)
Animal - One-color microarray (6)
ChIP-chip by array (5)
Proteomic profiling by array (5)
RNA-seq of total RNA (5)
Transcription profiling by SAGE (4)
RNAi profiling by array (4)
Human - One-color microarray (3)
Animal - High-throughput sequencing (3)
MicroRNA profiling by high-throughput sequencing (2)
Human - High-throughput sequencing (2)
Transcription profiling by high throughput sequencing (1)
Cell line - Single-cell sequencing (1)
Animal - Two-color microarray (1)
RNA-seq of non coding RNA from single cells (1)

Release Date

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2020 (1213)
2019 (1070)
2018 (990)
2016 (837)
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2015 (801)
2014 (749)
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2011 (400)
2010 (389)
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2008 (204)
2009 (195)
2007 (132)
2006 (65)
2005 (45)
2004 (24)
2003 (16)
2002 (14)
2001 (10)
1999 (9)
1998 (5)
2000 (3)

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Transcript, protein and metabolite temporal dynamics in the CAM plant Agave

Already a proven mechanism for drought sustainability, crassulacean acid metabolism (CAM) is a specialized type of photosynthesis that maximizes water-use efficiency (WUE) via an inverse (compared to C3 and C4 photosynthesis-performing species) day/night pattern of stomatal closure/opening to shift ...

2017-10-13 | MTBLS363 | MetaboLights

Temporal characterization of serum metabolite signatures in lung cancer patients undergoing treatment

Lung cancer causes more deaths in men and women than any other cancer related disease. Currently, few effective strategies exist to predict how patients will respond to treatment. We evaluated the serum metabolomic profiles of 25 lung cancer patients undergoing chemotherapy ± radiation to evaluate t...

2017-01-19 | MTBLS200 | MetaboLights

Organotypic microfluidic breast cancer model reveals starvation-induced spatial-temporal metabolic adaptations

BACKGROUND: Ductal carcinoma in situ (DCIS) is the earliest stage of breast cancer. During DCIS, tumor cells remain inside the mammary duct, growing under a microenvironment characterized by hypoxia, nutrient starvation, and waste product accumulation; this harsh microenvironment promotes genomic in...

2019-02-08 | MTBLS669 | MetaboLights

Non-canonical Metabolic and Molecular Effects of Calorie Restriction Are Revealed by Varying Temporal Conditions

Calorie restriction (CR) extends lifespan and healthspan in diverse species. However, comparing ad libitum (AL) and CR-fed mice is challenging due to their significantly different feeding patterns. CR-fed mice consume their daily meal in approximately 2 hours, subjecting themselves to a prol...

2025-07-07 | MTBLS10795 | MetaboLights

Untargeted metabolomics reveals temporal rhizosphere metabolic responses during colonization of citrus by Burkholderia strain B23

This study investigated temporal changes in the citrus rhizosphere metabolome during colonization by the beneficial bacterium Burkholderia vietnamiensis B23. Rhizosphere soil samples were collected from uninoculated plants and at 1, 3, and 9 days post inoculation (dpi) with B23, representing the ini...

2026-08-25 | MTBLS15457 | MetaboLights

Changes in lipid profiles of epileptic mouse model

INTRODUCTION: Approximately 1% of the world's population is impacted by epilepsy, a chronic neurological disorder characterized by seizures. One-third of epileptic patients are resistant to AEDs, or have medically refractory epilepsy (MRE). One non-invasive treatment that exists...

2022-01-06 | MTBLS1432 | MetaboLights

Temporal neocortex mesial temporal lobe epilepsy

Ion channel splice array data collected from temporal neocortex brain tissue collected from patients with mesial temporal lobe epilepsy. Temporal cortex samples from control subjects were compared to temporal neocortex of patients with mesial temporal lobe epilepsy

ORGANISM(S): Homo sapiens

2010-06-11 | E-GEOD-6773 | biostudies-arrayexpress

Temporal lobe epilepsy and Alzheimer's disease

This SuperSeries is composed of the following subset Series: GSE6771: Temporal Cortex Control (mesial temporal lobe epilepsy control) GSE6773: Temporal neocortex mesial temporal lobe epilepsy GSE6774: Temporal Cortex Control (Alzheimer's disease control) GSE6775: Temporal Cortex Alzheimer's Disease ...

ORGANISM(S): Homo sapiens

2007-01-23 | E-GEOD-6834 | biostudies-arrayexpress

Temporal Cortex Control (mesial temporal lobe epilepsy control)

Ion channel splice array data from temporal cortex brain tissue samples collected from control subjects (no mesial temporal lobe epilepsy). Keywords: disease associated splicing changes Temporal cortex samples from control subjects were compared to temporal neocortex of patients with mesial temporal...

ORGANISM(S): Homo sapiens

2007-01-23 | E-GEOD-6771 | biostudies-arrayexpress

Temporal proteome analysis of Clostridium cellulovorans

In order to elucidate the temporal proteome dynamics of C. cellulovorans, we performed quantitative proteome analysis in a different growth phase with five carbon sources (glucose, cellulose, xylan, galactomannan, and pectin).

ORGANISM(S): Clostridium Cellulovorans 743b

2019-04-22 | PXD010977 | JPOST Repository

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INTRODUCTION: Approximately 1% of the world's population is impacted by epilepsy, a chronic neurological disorder characterized by seizures. One-third of epileptic patients are resistant to AEDs, or have medically refractory epilepsy (MRE). One non-invasive treatment that exists...

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