time-series analysis.

Show results for

Unknown (9658)
Transcriptomics (1801)
Genomics (1221)
Proteomics (669)
Metabolomics (146)
Other (17)
Methylation profiling (9)
Models (8)
Genomic (4)
Clinical (3)

Organisms

Homo sapiens (652)
Mus musculus (399)
Rattus norvegicus (91)
Arabidopsis thaliana (81)
Saccharomyces cerevisiae (72)
Drosophila melanogaster (59)
Streptomyces coelicolor (35)
Caenorhabditis elegans (28)
Escherichia coli (23)
Vitis vinifera (22)
Oryza sativa (21)
Methanococcus maripaludis S2 (18)
Hordeum vulgare (17)
Danio rerio (17)
Triticum aestivum (14)
Gallus gallus (13)
Sus scrofa (12)
Bos taurus (10)
Schizosaccharomyces pombe (9)
Zea mays (9)
Synechocystis sp. PCC 6803 (7)
Saccharomyces cerevisiae SK1 (6)
Anopheles gambiae (6)
Macaca mulatta (6)
Bacillus subtilis (6)
Ovis aries (5)
Xenopus laevis (4)
Apis mellifera (4)
Ostreococcus tauri (1)
Rattus (1)

Organisms

Homo sapiens (286)
Mus musculus (183)
viral metagenome (56)
Rattus norvegicus (35)
Arabidopsis thaliana (28)
Drosophila melanogaster (25)
Saccharomyces cerevisiae (18)
Oryza sativa (10)
Methanococcus maripaludis S2 (9)
Vitis vinifera (9)
Streptomyces coelicolor (8)
Caenorhabditis elegans (7)
Sus scrofa (7)
Escherichia coli (7)
marine metagenome (6)
Saccharomyces cerevisiae SK1 (5)
Hordeum vulgare (5)
Danio rerio (5)
Macaca mulatta (4)
Zea mays (4)
Bos taurus (4)
Gemmatimonas phototrophica (3)
Euphorbia esula (3)
Synechocystis sp. PCC 6803 (3)
Dictyostelium discoideum (3)
Xenopus laevis (3)
Xenopus tropicalis (3)
Hydra vulgaris (3)
Phaeodactylum tricornutum (3)
Oryzias latipes (3)

Repository

biostudies-arrayexpress (1450)
ENA (1133)
pride (618)
geo (461)
MetaboLights (140)
iProX (15)
MassIVE (13)
EGA (12)
jPOST (11)
PeptideAtlas (10)
BioModels (7)
GNPS (5)
dbGaP (4)
PanoramaPublic (2)
FAIRDOMHub (1)
GPMDB (1)
NODE (1)

Tissue

Cell culture (133)
Epithelial cell (38)
Liver (28)
Blood (26)
Brain (26)
Blood plasma (24)
Blood serum (19)
Lung (19)
Permanent cell line cell (18)
Plant cell (16)
HeLa cell (13)
Blood cell (12)
Leaf (11)
T cell (11)
Plasma Non-glyco (10)
Cell suspension culture (10)
Primary cell (10)
Whole body (10)
Macrophage (9)
Bone marrow (8)
Colon (8)
Heart (8)
Kidney (8)
Fibroblast (7)
Embryonic stem cell (6)
Erythrocyte (6)
Skin (6)
Stem cell (6)
Blood platelet (5)
Human urine, plasma and BV2 cell (1)

Disease

Breast cancer (16)
Normal (8)
Squamous Cell Carcinoma (2)
Mammary tumor (2)
Pancreatic cancer (1)
Radiation-induced DNA damage (1)
Fatty liver disease (1)
Yersinia enterocolitica uninfected (1)
GIP-dependent Cushing's syndrome (1)
Injured (1)
Mild spinal cord injury (1)
Multiple myeloma TC3 (1)
Burn injury (1)
Malignant testicular germ cell tumor (1)
Wounded; tumour (1)
Metabolic syndrome (1)
Mild early symptoms (1)
Diabetes mellitus type 1 (1)
Dermal neurofibroma (1)
Anaplastic large cell lymphoma has DiseaseStaging II (1)
T. circumcincta infection (1)
Myocardial infarction (1)
12 DAI with PepMV-EU isolate (1)
Wolbachia infected (1)
None (1)
Cladosporium fulvum infected (1)
TAC operated 1 hour after surgery (1)
MFC II (1)
Mammary adenocarcinoma (pleural effusion) (1)
No local recurrence (1)

Technology Type

Mass Spectrometry (618)
Shotgun proteomics (296)
Bottom-up proteomics (130)
Mass spectrometry (104)
Data-dependent acquisition (84)
SWATH MS (51)
Data-independent acquisition (40)
Affinity purification coupled with mass spectrometry proteomics (39)
Mass spectrometry assay (33)
Gel-based experiment (32)
Top-down proteomics (27)
Chemical cross-linking coupled with mass spectrometry proteomics (16)
All-ion fragmentation (13)
SRM/MRM (13)
HDMSE (11)
MSE (8)
NMR spectroscopy (7)
Immunopeptidomics (5)
Mass spectrometry imaging (5)
DiaPASEF (3)
Proteogenomics (2)
Complete Genomics (1)
Metaproteomics (1)

Instrument Platform

Illumina HiSeq 2000 (17)
Illumina HiSeq 2500 (15)
Illumina NovaSeq 6000 (14)
Illumina HiSeq 4000 (14)
NextSeq 500 (8)
Agilent G2505B scanner (6)
Illumina NovaSeq X (6)
ScanArray 5000 [PerkinElmer] (5)
Illumina Genome Analyzer IIx (5)
DNBSEQ-G400 (5)
GenePix 4000B [Axon Instruments] (4)
Scanning hardware (4)
Maxwell 16 LEV-plant RNA kit (3)
DNA Microarray Scanner BA [Agilent Technologies] (3)
Axon- GenePix4000B (3)
418 [Affymetrix] (3)
Axon GenePix 4000B scanning hardware (3)
Agilent High resolution C scanner (2)
Maxwell 16 Instrument (2)
Chemostat (2)
G2565BA DNA microarray scanner [Agilent] (2)
ScanArray Express HT [PerkinElmer] (2)
Illumina HiSeq 1500 (2)
NextSeq 550 (2)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
Countess 3 FL Automated Cell Counter (Thermo Fisher Scientific; AMQAF2000); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781) (1)
HISAT2, TOPHAT2 (1)
Illumina iScan microarray scanner (1)
TruSeq Stranded mRNA assay (Illumina) (1)

Publication Date

2010 (237)
2008 (201)
2025 (182)
2011 (164)
2012 (154)
2023 (146)
2022 (139)
2015 (131)
2007 (129)
2013 (126)
2014 (122)
2026 (120)
2024 (118)
2009 (116)
2016 (108)
2021 (96)
2020 (87)
2019 (84)
2018 (71)
2005 (65)
2006 (58)
2017 (52)
2004 (17)
2003 (3)

UNIPROT ID/AC

A0A024RAN2 (10)
A0A075B6P5 (10)
A0A087WT59 (10)
A0A087WTX5 (10)
A0A087WVW2 (10)
A0A087WWA5 (10)
A0A087WYL9 (10)
A0A087X130 (10)
A0A087X1V9 (10)
A0A087X232 (10)
A0A0A0MS07 (10)
A0A0A0MS51 (10)
A0M8Q6 (10)
A0N5G5 (10)
A1A5B4 (10)
A1L4H1 (10)
A2BFH1 (10)
A2IPH7 (10)
A2IPI2 (10)
A2IPI5 (10)
A2J422 (10)
A2J423 (10)
A2NI60 (10)
A2NKM6 (10)
A2NUT2 (10)
A2NXP9 (10)
A2NYQ9 (10)
A2NZ55 (10)
A4F255 (10)
A5A3E0 (10)

ENSEMBL ID

ENSG00000170477 (10)
ENSG00000229353 (10)
ENSG00000185338 (1)
ENSG00000115415 (1)

CHEBI ID

CHEBI:15428 (40)
CHEBI:16335 (39)
CHEBI:17368 (38)
CHEBI:16708 (37)
CHEBI:6650 (35)
CHEBI:28044 (34)
CHEBI:16704 (34)
CHEBI:17596 (34)
CHEBI:30769 (34)
CHEBI:24898 (33)
CHEBI:25017 (33)
CHEBI:17568 (32)
CHEBI:17750 (32)
CHEBI:15891 (32)
CHEBI:25094 (31)
CHEBI:16750 (31)
CHEBI:32816 (31)
CHEBI:16027 (31)
CHEBI:15741 (30)
CHEBI:16235 (30)
CHEBI:16449 (30)
CHEBI:18012 (30)
CHEBI:16737 (30)
CHEBI:16856 (29)
CHEBI:18237 (29)
CHEBI:30915 (29)
CHEBI:18186 (28)
CHEBI:17154 (28)
CHEBI:16040 (27)
CHEBI:16695 (27)

Metabolite Name

Adenine (29)
Uridine (29)
Uracil (27)
Adenosine (27)
Taurine (25)
Inosine (25)
Hypoxanthine (25)
L-Phenylalanine (22)
Glycine (21)
Glutathione (21)
Creatinine (21)
Creatine (21)
AMP (19)
Betaine (19)
Cytidine (19)
Xanthine (19)
Guanosine (19)
L-Methionine (19)
Lysine (18)
L-Tryptophan (18)
Sucrose (18)
Thymine (17)
Cytosine (17)
Glycerol (16)
Histamine (16)
Guanine (16)
Phenylalanine (16)
Isoleucine (16)
L-Valine (16)
Citrulline (15)

First Public Date

2014 (352)
2018 (100)
2024 (93)
2023 (75)
2025 (70)
2022 (66)
2026 (65)
2020 (58)
2021 (55)
2019 (50)
2017 (43)
2015 (43)
2013 (32)
2016 (30)
2010 (1)

Modelling Approach

Ordinary differential equation model (3)
Other (1)
Differential equation model (1)
Constraint-based model (1)

Study status

Active, not recruiting (1)
Not provided (1)
Completed (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (21)
School of Biological Sciences, Nanyang Technological University (10)
University of Warwick (8)
Mass Spectrometry Facility, Department of Chemistry and Biochemistry, San Francisco State University, USA (5)
The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (5)
Cedars-Sinai Medical Center (4)
Department of Neurobiology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA (3)
TIGEM (3)
Brown University (2)
Cancer Science Institute of Singapore (CSI), National University of Singapore (NUS) (2)
Chemical and Biological Engineering, Hong Kong University of Science and Technology (HKUST) (2)
Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (2)
Departamento de Medicina Animal, Hospital Clínico Veterinario Universidad de Extremadura Avd de la Universidad s/n 10003 Cáceres SPAIN (2)
Department of Biochemistry and Biophysics, RNA Discovery Center, and Lineberger Comprehensive Cancer Center, The University of North Carolina at Chapel Hill (2)
Department of Biochemistry and Microbiology, Ghent University, Belgium (2)
Department of Biotechnology, Faculty of Converging Sciences and Technologies, Islamic Azad University, Science and Research Branch, Tehran, Iran, Mailbox: 775/14515, Postcode: 1477893855, ORCID: 0000-0001-6656-777X (2)
Department of Chemical and Biological Engineering, The Hong Kong University of Science and Technology (HKUST) (2)
Department of Clinical Laboratory, The Second Affiliated Hospital of Chongqing Medical University, Chongqing, China. The Key Laboratory of Molecular Biology of Infectious Diseases designated by the Chinese Ministry of Education, Chongqing Medical University, Chongqing, China. (2)
Department of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, United States of America (2)
Department of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, 6525 GA Nijmegen, The Netherlands. (2)
Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA. (2)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (2)
Department of Plant Physiology and Biochemistry, University of Hohenheim, 70599 Stuttgart, Germany (2)
Department of Proteomics and Signal Transduction, Systems Biology of Membrane Trafficking Research Group, Max-Planck Institute of Biochemistry, Martinsried, Germany (2)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (2)
Director, Proteome Center Rostock, University of Rostock, Germany (2)
Emory University (2)
Fudan University (2)
Imperial College London (2)
Institute of Organic Chemistry and Biochemistry of the CAS (2)

Keyword

Tumor resection (1)
Lymphocytic density (1)
CD3 (1)
CD45RO (1)
Genetic feature of the tumor (1)
Image analysis software (1)
Population Surveillance (1)
Health Behavior (1)
Immunohistochemistry (1)
Immunoscore (1)
CD8 (1)
Randomized controlled trial (1)
Occult Blood (1)
Biopsy (1)
Mass Screening (1)
Sigmoidoscopy (1)
Relapse (1)
Colonoscopy (1)

IsPrivate

False (7)

Model Flag

Non Kinetic (3)

Classification

bacteria (30)
protozoa (5)
viruses (1)

Modification

2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
15.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
57.021464 (1)
6x(2)H labeled dimethylated L-arginine (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (1077)
RNA-seq of coding RNA (109)
Unknown experiment type (71)
ChIP-seq (30)
Comparative genomic hybridization by array (26)
Methylation profiling by array (17)
Transcription profiling by tiling array (14)
RNA-seq of non coding RNA (13)
Other (12)
ChIP-chip by array (10)
ChIP-chip by tiling array (7)
RNA-seq of total RNA (7)
Transcription profiling by RT-PCR (6)
RNA-seq of coding RNA from single cells (6)
Genotyping by array (4)
MicroRNA profiling by array (4)
RNAi profiling by array (3)
DNA-seq (3)
Methylation profiling by high throughput sequencing (3)
Transcription profiling by SAGE (2)
High-throughput sequencing (2)
Proteomic profiling by array (2)
FAIRE-seq (1)
Animal - Two-color microarray (1)
MNase-seq (1)
MeDIP-seq (1)
Animal - One-color microarray (1)
Cell line - One-color microarray (1)
Translation profiling (1)
Human - One-color microarray (1)

Release Date

2022 (1361)
2023 (1174)
2025 (1169)
2021 (1108)
2024 (1036)
2020 (808)
2019 (620)
2018 (512)
2017 (403)
2016 (383)
2015 (359)
2014 (311)
2010 (288)
2013 (258)
2011 (243)
2012 (236)
2008 (229)
2009 (160)
2007 (146)
2026 (135)
2006 (64)
2005 (58)
2004 (25)
2003 (8)
2002 (8)
2001 (2)
2000 (2)
1999 (1)
1998 (1)

Location

Brazil (1)
United States (1)
France (1)

Previous page
1 / 1355
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 1355
Next page

Sort by:

Relevance

Page size

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

The development of reliable, mixed-culture biotechnological processes hinges on understanding how microbial ecosystems respond to disturbances. Here we reveal extensive phenotypic plasticity and niche complementarity in oleaginous microbial populations from a biological wastewater treatment plant. W...

2021-04-06 | MTBLS2021 | MetaboLights

Dissolved metabolites from the Bermuda Atlantic Time-series Study: 2016-2019

Organic carbon in seawater plays a significant role in the global carbon cycle. The concentration and composition of dissolved organic carbon, operationally defined in this project as organic carbon that passes through a 0.2 µm filter, reflect the actions of the biological community and chemical ...

2022-02-09 | MTBLS2356 | MetaboLights

Single-cell Transcriptomics and Time-series Metabolite Profiling Reveal the Spatiotemporal Regulation of Flavonoid Biosynthesis Genes and Phytohormone Homeostasis by PAP1 in Arabidopsis

Understanding the spatiotemporal regulation of specialized metabolism in plants is critical for advancing both basic plant biology and biotechnological applications. In this study, we utilized single-cell RNA sequencing (scRNA-seq) and time-series metabolite profiling to investigate the regulation o...

2025-05-27 | MTBLS12459 | MetaboLights

Time-series proteome profiling analysis of the atria in a murine model of angiotensin II-induced atrial fibrillation

Atrial fibrillation (AF) is the most common form of arrhythmia observed in clinical cardiac diseases. Angiotensin II (Ang II) and elevation of blood pressure have been considered to be the main risk regulators of AF. However, the time series proteome profiling and the key signaling pathways involved...

ORGANISM(S): Mus musculus (Mouse)

2022-04-04 | PXD022238 | Pride