transmission electron microscopy.

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Unknown (14250)
Genomics (488)
Transcriptomics (320)
Proteomics (255)
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Methylation profiling (1)
Multiomics (1)

Organisms

Homo sapiens (264)
Mus musculus (135)
Danio rerio (16)
Rattus norvegicus (16)
Arabidopsis thaliana (10)
Drosophila melanogaster (9)
Staphylococcus aureus (7)
Lupinus angustifolius (3)
Legionella pneumophila (2)
Puccinia graminis f. sp. tritici (2)
Bifidobacterium breve UCC2003 (2)
Staphylococcus aureus subsp. aureus Mu50 (2)
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Rhinolophus ferrumequinum (1)
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Mus musculus castaneus (1)
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Mycobacterium tuberculosis CDC1551 (1)
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Sorghum bicolor (1)
Medicago truncatula (1)
Oryza sativa (1)
Emiliania huxleyi (1)

Organisms

Homo sapiens (66)
Mus musculus (56)
Rattus norvegicus (11)
Clostridioides difficile (10)
Danio rerio (9)
activated sludge metagenome (6)
Drosophila melanogaster (5)
Staphylococcus aureus (5)
Arabidopsis thaliana (5)
Bos taurus (4)
Oryctolagus cuniculus (3)
Salmo salar (2)
Candida albicans (2)
Gallus gallus (2)
Alienimonas chondri (1)
Cafileria marina (1)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (1)
Klebsiella phage P13 (1)
Methylosinus trichosporium OB3b (1)
Pyrococcus furiosus (1)
Hydrogenovibrio crunogenus (1)
Orthoreovirus (1)
Pyropia haitanensis (1)
Aeromonas phage vB_AH-LH (1)
Pseudomonas phage KPP23 (1)
Leucomyxa plasmidifera (1)
Xenopsylla cheopis (1)
Schistosoma japonicum (1)
Camelus bactrianus (1)
Dinophyceae (1)

Repository

ENA (337)
biostudies-arrayexpress (190)
geo (184)
pride (110)
EGA (103)
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PAXDB (3)
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Tissue

Cell culture (18)
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Whole body (2)
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Cell suspension culture (1)
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Culture fluid (1)
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Disease

Disease free (4)
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MAS (1)
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Normal (1)
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Pre-eclampsia (1)
Stroke (1)
Type 2 diabetes mellitus (1)
Ulcerative colitis (1)
Viral hepatitis (1)
Viral infectious disease (1)
Zika fever (1)

Technology Type

Mass Spectrometry (110)
Shotgun proteomics (56)
Bottom-up proteomics (39)
Mass spectrometry (21)
Mass spectrometry assay (17)
Data-dependent acquisition (14)
Data-independent acquisition (10)
Illumina HiSeq 2000 (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (4)
SWATH MS (4)
Illumina HiSeq 2500, ILLUMINA (2)
Illumina HiSeq 2500 (2)
NMR spectroscopy (2)
MSE (2)
Top-down proteomics (2)
HiSeq X Five, ILLUMINA (1)
Illumina MiSeq, ILLUMINA (1)
Illumina HiSeq 4000, ILLUMINA (1)
Illumina HiSeq 2500 (ILLUMINA) (1)
NextSeq 500, Illumina HiSeq 2500, AB 5500xl Genetic Analyzer, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500 (1)
Illumina MiSeq (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (33)
NextSeq 500 (15)
Illumina HiSeq 4000 (8)
Illumina NovaSeq X (7)
NA (3)
NextSeq 2000 (3)
10x Genomics Chromium Controller (2)
Illumina HiSeq 2000 (2)
Chromium X instrument (10x Genomics); GEM-X FX Chips (10x Genomics); Agilent TapeStation D1000; qPCR (library quantification kit for Illumina platforms) (1)
Chromium X instrument (10x Genomics); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781); Human Gene Expression Probe Set v1.0.1 (10x Genomics) (1)
Countess 3 FL Automated Cell Counter (Thermo Fisher Scientific; AMQAF2000); GEM-X Flex Sample Preparation v2 Kit (10x Genomics; 1000781) (1)
TruSeq Stranded Total RNA kit (Illumina) (1)
FACSAria III (BD Sciences) (1)
Chromium Controller with Chromium Next GEM Single Cell 5’ and V(D)J (kits v1.1) (1)
RiboErase Roche (1)
Qiagen RNaesy kit (1)
NextSeq 500, 75 bp single end lane (1)
BD Rhapsody Express Instrument (1)
Linux Bash Scripting (1)
NEBNext Ultra II Directional RNA Library Prep (1)
Qiagen RNeasy Mini Kit (1)
With L-glutamine supplemented with 10% fetal bovine serum (FBS) (Gibco) and 1% penicillin-streptomycin (10,000 units/mL penicillin and 10 mg/mL streptomycin) (Gibco). (1)
IEO HPC (1)
HPC (1)
Maxwell 16 LEV-plant RNA kit (1)
Sequel II (1)
Genomics Core Shared Resources at Augusta University (RRID: SCR_026483) (1)
RNeasy Mini Kit (Qiagen) (1)
GentleMACS Octo Dissociator with Heaters (Miltenyi Biotec, Cat. No. 130-096-427) together with the Human Tumor Dissociation Kit (Miltenyi Biotec, Cat. No. 130-095-929), (1)
10x Genomics Chromium (1)

Publication Date

2026 (114)
2025 (101)
2024 (75)
2023 (55)
2022 (50)
2021 (35)
2012 (24)
2013 (23)
2019 (22)
2011 (20)
2014 (18)
2020 (18)
2010 (16)
2018 (15)
2016 (13)
2009 (13)
2008 (13)
2017 (9)
2015 (8)
2006 (3)
2007 (2)
2005 (2)

UNIPROT ID/AC

14310_ARATH (1)
14310_SOLLC (1)
14311_ARATH (1)
14331_SOLLC (1)
14332_ARATH (1)
14332_SOLLC (1)
14333_ARATH (1)
14333_SOLLC (1)
14334_SOLLC (1)
14335_ARATH (1)
14335_SOLLC (1)
14336_SOLLC (1)
14337_ARATH (1)
14337_SOLLC (1)
14338_SOLLC (1)
14339_ARATH (1)
14339_SOLLC (1)
1A110_ARATH (1)
1A112_ARATH (1)
2A5A_ARATH (1)
2A5B_ARATH (1)
2A5D_ARATH (1)
2A5G_ARATH (1)
2A5Z_ARATH (1)
2AAA_ARATH (1)
2AAB_ARATH (1)
2AAG_ARATH (1)
2AB2A_ARATH (1)
2AB2B_ARATH (1)
2AB2D_ARATH (1)

ENSEMBL ID

ENSG00000170477 (3)
ENSG00000247315 (2)

CHEBI ID

CHEBI:17822 (7)
CHEBI:25094 (7)
CHEBI:30769 (7)
CHEBI:22653 (6)
CHEBI:18186 (6)
CHEBI:26986 (6)
CHEBI:18257 (6)
CHEBI:24898 (6)
CHEBI:28044 (6)
CHEBI:16335 (6)
CHEBI:27266 (6)
CHEBI:16449 (6)
CHEBI:29016 (6)
CHEBI:18012 (6)
CHEBI:27897 (6)
CHEBI:18132 (5)
CHEBI:18237 (5)
CHEBI:16811 (5)
CHEBI:28300 (5)
CHEBI:15428 (5)
CHEBI:17148 (5)
CHEBI:16610 (5)
CHEBI:6650 (5)
CHEBI:16865 (5)
CHEBI:16919 (5)
CHEBI:18089 (5)
CHEBI:17768 (4)
CHEBI:17992 (4)
CHEBI:15611 (4)
CHEBI:26271 (4)

Metabolite Name

Histidine (6)
Uracil (6)
Pantothenic acid (6)
Fumaric acid (6)
Asparagine (6)
Phenylalanine (6)
Palmitic acid (6)
L-Tyrosine (6)
Inosine (6)
Leucine (5)
Glycine (5)
Valine (5)
Benzoic acid (5)
Androsterone (5)
Serotonin (5)
Palmitoleic acid (5)
L-Histidine (5)
4-Hydroxybenzaldehyde (5)
Tyrosine (5)
Adenosine (5)
Spermidine (5)
Cytosine (5)
2-Phenylacetamide (5)
Hexadecanedioic acid (5)
Glutamine (5)
Creatine (5)
Tryptophan (5)
L-Isoleucine (5)
L-Phenylalanine (5)
Naringenin (4)

First Public Date

2025 (84)
2026 (70)
2024 (39)
2014 (32)
2023 (27)
2022 (20)
2021 (18)
2020 (16)
2018 (8)
2019 (7)
2017 (6)
2016 (5)
2015 (4)
2013 (1)

Classification

bacteria (20)
viruses (5)
fungi (2)
helminths (1)
protozoa (1)

Study type

Transcription profiling by array (87)
RNA-seq of coding RNA (40)
RNA-seq of coding RNA from single cells (19)
ChIP-seq (11)
RNA-seq of non coding RNA (5)
RNA-seq of total RNA (4)
Comparative genomic hybridization by array (3)
CUT&RUN (3)
Transcription profiling by SAGE (2)
ATAC-seq (2)
RIP-seq (2)
Other (2)
ScATAC-seq (2)
Methylation profiling by array (2)
RAN-seq of total RNA from single cells (1)
Unknown experiment type (1)
Human - Single-cell sequencing (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
MicroRNA profiling by array (1)

Release Date

2022 (1748)
2025 (1648)
2023 (1582)
2021 (1448)
2024 (1380)
2020 (1345)
2019 (1058)
2018 (935)
2017 (661)
2016 (551)
2015 (445)
2014 (348)
2026 (288)
2013 (234)
2012 (178)
2011 (149)
2010 (112)
2009 (84)
2008 (70)
2007 (42)
2005 (33)
2006 (23)
2002 (22)
2004 (16)
2003 (11)
2001 (9)
2000 (6)
1999 (6)
1998 (6)
1980 (1)

Lab affiliation

Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
Transcription and Disease Laboratory, Molecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore, Karnataka, India (2)
1. Department of Paediatrics, University Hospital of North Norway, Tromsø, Norway 2 Paediatric Research Group, Department of Clinical Medicine, Faculty of Health Sciences, UiT- The Arctic University of Norway, Tromsø, Norway. (1)
1. Gene Regulation, Stem Cells and Development group, PTS, Granada GENyO, Pfizer-University of Granada-Andalusian Regional Government Centre for Genomics and Oncological Research, Avenida de la Ilustración 114, 18016 Granada, Spain. 2. Department of Biochemistry and Molecular Biology I, Faculty of Science, University of Granada, Avenida Fuentenueva s/n, 18071 Granada, Spain. 3. Instituto de Investigación Biosanitaria ibs.GRANADA, Granada, Spain. (1)
1. Laboratoire de Spectrométrie de Masse BioOrganique, IPHC UMR 7178, Université de Strasbourg, CNRS, 67000 Strasbourg, France 2. Infrastructure Nationale de Protéomique ProFI – FR2048, 67087 Strasbourg, France (1)
1.Department of Colorectal Surgery, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. 2.Guangdong Provincial Key Laboratory of Colorectal and Pelvic Floor Diseases, The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. (1)
Algal Processing Group, Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia (1)
Analytical Biochemistry and Proteomics Unit, Institut Pasteur de Montevideo & Instituto de Investigaciones Biológicas Clemente Estable. (1)
Army medical university (1)
Assistant Professor, Departments of Oncology & Pathology, McGill University Principal Investigator, Cancer Research Program, MUHC-RI 1001 Decarie Blvd, EM2.2218 514.934.1934 ext 76307 Montréal, Canada (1)
Australian Institute of Tropical Health and Medicine. Centre for Molecular Therapeutics. James Cook Univerisity, Cairns. (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (1)
Biozentrum, University of Basel, Switzerland (1)
CIC bioGUNE Proteomics Service Head (1)
Center for Regeneration and Aging,BGI-haangzhou (1)
College of Animal Sciences and Technology, Huazhong Agricultural University, China (1)
College of Veterinary Medicine, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, PR China (1)
College of integrated traditional Chinese and Western medicine, Hebei Medical University,Shijiazhuang,China (1)
Computational and Experimental Biology Group, CEDOC, Chronic Diseases Research Centre, NOVA Medical School, Faculdade de Ciencias Medicas, Universidade NOVA de Lisboa, Campo dos Martires da Patria, 130, 1169-056 Lisboa, Portugal (1)
Core Facilities – Clinical Proteomics and Metabolomics, IRCCS Istituto G. Gaslini, Genova, Italy (1)
Departament de Bioquímica i Biologia Molecular, Facultat de Ciències Biològiques, Universitat de València, Burjassot (Valencia), Spain (1)
Departamento de Biología de Sistemas, Universidad de Alcalá, 28871 Alcala de Henares, Madrid, Spain (1)
Department of Animal and Aquaculture Sciences, Faculty of Biosciences, Norwegian University of Life Sciences, Aas, Norway (1)
Department of Biochemistry (286) Radboud University Medical Centre Radboud Institute for Molecular Life Sciences P.O. Box 9101 NL-6500 HB Nijmegen The Netherlands (1)
Department of Biochemistry and Molecular Biology, University of Southern Denmark, Denmark (1)
Department of Biology, Chair of Molecular Genetics and Microbiology, University of Ljubljana, Slovenia (1)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Department of Clinical Laboratory The Second Affiliated Hospital Guizhou University of Traditional Chinese Medicine (1)
Department of Immunology, Genetics & Pathology, Science for Life Laboratory, Uppsala University, Uppsala, Sweden. (1)

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