tutorial - OmicsDI

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Unknown (1065)
Proteomics (18)
Transcriptomics (13)
Metabolomics (13)
Genomics (7)
Models (3)
Clinical (1)

Organisms

Schizophyllum commune H4-8 (14)
Mycobacterium tuberculosis SP7 (14)
Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 (14)
Oryza sativa Japonica Group (14)
Rabbit calicivirus (14)
Crotalus durissus terrificus (14)
Eriocheir sinensis (14)
Candidatus Endoriftia persephonae (14)
Mycobacterium tuberculosis SP10 (14)
Mycobacterium tuberculosis SP13 (14)
Cotesia typhae (14)
Mycobacterium tuberculosis SP22 (14)
Cepaea nemoralis (14)
Enterobacter ludwigii (14)
Trichoderma asperellum CBS 433.97 (14)
Corynebacterium diphtheriae bv. mitis str. ISS 3319 (14)
Nakaseomyces glabratus (14)
Olea europaea (14)
Chlamydomonas reinhardtii (14)
Lama (14)
Planorbella pilsbryi (14)
Wolbachia sp. wMelPop (14)
Pyricularia oryzae P131 (14)
Mus musculus (6)
Homo sapiens (5)
Arabidopsis thaliana (2)
Salmo trutta (1)
Hordeum vulgare (1)
Drosophila melanogaster (1)
Pseudomonas aeruginosa (1)

Organisms

Homo sapiens (1)

Repository

pride (14)
biostudies-arrayexpress (12)
MetaboLights (8)
GNPS (5)
ENA (5)
MassIVE (3)
PMR (3)
geo (2)
jPOST (1)
NODE (1)

Tissue

Brain (2)
Cell culture (2)
Myoblast cell line (1)
Myoblast (1)
Skeletal muscle myoblast (1)
Salivary gland (1)
Shoot (1)
Blood plasma (1)
Whole body (1)

Disease

Colorectal Neoplasms (1)
Alzheimer's disease 1 (1)
Congenital disorder of glycosylation (1)

Technology Type

Mass Spectrometry (14)
Shotgun proteomics (8)
Mass spectrometry (7)
SRM/MRM (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
NMR spectroscopy (1)
SWATH MS (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Top-down proteomics (1)
Bottom-up proteomics (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (6)
Liquid Chromatography MS - negative - reverse phase (3)
MaXis (2)
Agilent GC 7890 MS 5977 (1)
Hypothetical GC-MS Instrument _ GNPS Workshop (1)
Q-Exactive (1)
Q-Exactive H-FX (1)
Q Exactive HF EMR (1)
Q Exactive (1)
Liquid Chromatography MS - positive - reverse (1)
Liquid Chromatography MS - negative - reverse (1)
Capillary electrophoresis MS - negative (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Capillary electrophoresis MS - positive (1)
Gas Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2024 (9)
2023 (8)
2020 (8)
2018 (4)
2019 (3)
2025 (2)
2012 (2)
2021 (2)
2022 (2)
2015 (1)
2014 (1)
2010 (1)
2006 (1)
2008 (1)

CHEBI ID

CHEBI:16865 (5)
CHEBI:18237 (5)
CHEBI:15611 (4)
CHEBI:30769 (4)
CHEBI:15354 (4)
CHEBI:16704 (4)
CHEBI:16449 (4)
CHEBI:15741 (4)
CHEBI:22660 (4)
CHEBI:16811 (4)
CHEBI:17368 (4)
CHEBI:26271 (4)
CHEBI:28044 (4)
CHEBI:18186 (4)
CHEBI:16411 (3)
CHEBI:16010 (3)
CHEBI:15843 (3)
CHEBI:17148 (3)
CHEBI:15891 (3)
CHEBI:21547 (3)
CHEBI:17750 (3)
CHEBI:16335 (3)
CHEBI:27897 (3)
CHEBI:15428 (3)
CHEBI:17822 (3)
CHEBI:6650 (3)
CHEBI:16737 (3)
CHEBI:26986 (3)
CHEBI:28300 (3)
CHEBI:27266 (3)

Metabolite Name

Creatinine (3)
Xanthine (3)
Glycocyamine (2)
Kynurenic acid (2)
Methionine (2)
Tyrosine (2)
Phenylalanine (2)
Hypoxanthine (2)
Creatine (2)
Choline (2)
Inosine (2)
Uridine (2)
2-Hydroxyhexadecanoic_acid_1MeO_1TMS (1)
Proline, 3-hydroxy-, trans- (3TMS) (1)
Beta-Galactopyranosyl-1,3-arabinose, D- (1MEOX) (7TMS) (1)
Kestose, 6- (11TMS) (1)
Ergosterol (1TMS) (1)
Tricosanoic acid, n- (1TMS) (1)
Leucine, cyclo- (1TMS) (1)
Calystegine B2 (4TMS) (1)
Inositol-2-phosphate, myo- (7TMS) (1)
Androst-5-en-17-one, 3beta-hydroxy- (1TMS) (1)
Androst-5-ene, 3beta,17beta-dihydroxy- (2TMS) (1)
Fructose-1,6-diphosphate (7TMS) (1)
Homoserine lactone, N-butanoyl- (1)
Fructose-1,6-diphosphate (1MEOX) (7TMS) MP (1)
Mannose-6-phosphate (1MEOX) (6TMS) BP (1)
Alanine, beta- (1TMS) (1)
Chorismic-acid_3TMS (1)
Octadecenoic acid, 9-(Z)- (1TMS) (1)

First Public Date

2026 (1)
2021 (1)
2020 (1)
2018 (1)
2014 (1)

Study status

Completed (1)

Study type

RNA-seq of coding RNA (4)
RNA-seq of coding RNA from single cells (3)
Transcription profiling by array (2)
Methylation profiling by array (2)
Single nucleus RNA sequencing (1)
Interventional (1)

Release Date

2025 (133)
2023 (123)
2022 (123)
2021 (118)
2024 (114)
2020 (84)
2019 (70)
2018 (65)
2017 (45)
2015 (37)
2016 (32)
2026 (24)
2014 (23)
2013 (23)
2012 (15)
2009 (11)
2010 (10)
2011 (10)
2006 (5)
2008 (4)
2007 (4)
2004 (3)
2005 (1)

Lab affiliation

Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
Ruhr University Bochum Medical Faculty Medizinisches Proteom-Center (1)
Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany Wellcome Trust Centre for Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3BF, Scotland, United Kingdom (1)
Denali Therapeutics (1)
European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge, UK (1)
NIH/NIDCR (1)
Children's Medical Research Institute, Westmead, NSW, Australia (1)
Professor Vilas Distinguished Achievement Professor of Pharmaceutical Sciences and Chemistry Charles Melbourne Johnson Distinguished Chair in Pharmaceutical Sciences (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
University of Insubria (1)
Yale University, Department of Internal Medicine (1)
Charles University, Faculty of Pharmacy in Hradec Králové Department of Analytical Chemistry Akademika Heyrovského 1203/8 500 05 Hradec Králové, Czech Republic (1)
Research and Diagnostic Institute of Pathology, Medical University of Graz, Stiftingtalstrasse 6, 8010 Graz, Austria; Faculty of Technical Chemistry, Institute of Chemical Technologies and Analytics, Technische Universität Wien, Getreidemarkt 9/164, 1060 Vienna, Austria (1)

Location

United States (1)

Keyword

Health literacy (1)
Cancer screening (1)
Doctor-patient communication (1)
Standardized patient (1)
Continuing medical education (1)

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Reversed-phase liquid chromatography of peptides for bottom-up proteomics: A tutorial

The data were recorded for a tutorial focused on reversed-phase liquid chromatography of peptides for bottom-up proteomics. The project does not have any biological/clinical relevance.

ORGANISM(S): Francisella tularensis subsp. holarctica FSC539

2024-08-08 | PXD036783 | Pride

Data-independent Acquisition for the orbitrap. A tutorial.

Data-independent acquisition (DIA) is a powerful mass spectrometric technique to perform both protein identification and quantification of complex protein samples. Setting up DIA methods on Orbitrap analyzers requires a thorough overview over the actions the Orbitrap mass spectrometers carry out. Th...

ORGANISM(S): Pseudomonas Aeruginosa

2019-08-09 | PXD011449 | JPOST Repository

Electrochemical Impedance Spectroscopy-A Tutorial.

Not available

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A tutorial on pharmacometric Markov models.

Not available

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Tutorial on phantoms for photoacoustic imaging applications.

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Faculty Retreats in Academic Medicine: Tutorial.