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GenomicsTranscriptome (RNA-Seq), translatome (Ribo-Seq), and YB-1/YB-3-bound mRNAs (RIP-Seq) of HEK293T, HEK293TdeltaYB-1, and HEK293T+HA-YB-1 cells
Transcriptome (RNA-Seq), translatome (Ribo-Seq), and YB-1/YB-3-bound mRNAs (RIP-Seq) of HEK293T, HEK293TdeltaYB-1, and HEK293T+HA-YB-1 cells
PRJNA541324 | ENA
TranscriptomicsTranscriptome (RNA-Seq), translatome (Ribo-Seq), and YB-1/YB-3-bound mRNAs (RIP-Seq) of HEK293T, HEK293TdeltaYB-1, and HEK293T+HA-YB-1 cells
We present results of RNA-Seq, Ribo-Seq, and RIP-Seq (YB-1, YB-3) experiments performed in HEK293T cells, as well as in HEK293T cells with YB-1 knockout and overexpression. The data shows YB-1 function as a global translation inhibitor and YB-3 ability to substitute YB-1 in its function in YB-1 knoc...
ORGANISM(S): Homo sapiens 
2020-01-08 | GSE130781 | GEO
GenomicsCritical contribution of 3’ non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA [Ribo-seq]
Critical contribution of 3’ non-seed base pairing to the in vivo function of the evolutionarily conserved let-7a microRNA [Ribo-seq]
PRJNA720671 | ENA
TranscriptomicsUsing ribosome profiling and matched RNA sequencing to study the co-evolution of transcriptome and translatome in mammalian organs
Ribosome profiling (Ribo-seq) and matched RNA sequencing (RNA-seq) data for three major mammalian organs (brain (cerebrum), liver, and testis) from five representatives of the three main mammalian lineages: human, rhesus macaque, mouse (placental mammals); grey short-tailed opossum (marsupials); and...
ORGANISM(S): Mus musculus 
2020-07-23 | E-MTAB-7247 | biostudies-arrayexpress
TranscriptomicsRIBO-seq analysis of YTHDF2-deficient pre-leukemic cells and control pre-leukemic cells
YTHDF2 is overexpressed in a broad spectrum of human acute myeloid leukemias (AML). To study the role of YTHDF2 on translation regulation in leukemia, c-Kit+ cells from foetal livers of Ythdf2fl/fl; Vav-iCre (Ythdf2CKO) and Ythdf2fl/fl (Ythdf2CTL) 14.5 dpc embryos were transduced with Meis1 and Hox...
ORGANISM(S): Mus musculus 
2019-04-05 | E-MTAB-7785 | biostudies-arrayexpress
TranscriptomicsImproved Super-Resolution Ribosome Profiling Reveals Prevalent Translation of Upstream ORFs and Small ORFs in Arabidopsis
We used Ribo-seq (Ribosome profiling) combining with RNA-seq to explore the translational landscape of Arabidopsis Col-0 seedling. We generated 6 biological replicates of RNA-seq and Ribo-seq data for Arabidopsis Col-0 seedling. 3 of the replicates were collected after 20 minutes of 0.1% DMSO treatm...
ORGANISM(S): Arabidopsis thaliana 
2023-09-20 | GSE183264 | GEO
GenomicsRibo-lite, a method defining paired transcriptome (RNA-seq) and translatome (Ribo-seq) at low input on AML cells from mice treated with 5+3 or vehicle and fed standard amino acids (AA) or branched chain amino acid (BCAA) free diets.
Ribo-lite, a method defining paired transcriptome (RNA-seq) and translatome (Ribo-seq) at low input on AML cells from mice treated with 5+3 or vehicle and fed standard amino acids (AA) or branched chain amino acid (BCAA) free diets.
PRJNA1140141 | ENA
UnknownComparison of RNA-Seq by poly (A) capture, ribosomal RNA depletion, and DNA microarray for expression profiling.
Not available
S-EPMC4070569 | biostudies-literature
TranscriptomicsRibosome footprinting upon oxidative stress treatment for wild-type and catalase2 knock-out mutants
Arabidopsis wild-type and catalase2 knock-out mutants were subjected to 3 hrs of high light intensities. Middle aged leaves were sampled and both mRNA-seq and ribo-seq data was generated before the onset of oxidative stress treatment and after 3 hrs of high light. This describes the ribo-seq data.
ORGANISM(S): Arabidopsis thaliana 
2016-10-21 | E-MTAB-4757 | biostudies-arrayexpress
ProteomicsMazF toxin causes alterations in Staphylococcus aureus transcriptome, translatome and proteome that underlie bacterial dormancy
Bacterial antibiotic resistance is as a serious health problem. Antibiotic resistance appears either because of mutations or as a result of a bacteria dormant state without heritable genetic change. This non-growing state allows bacteria to survive antibiotic treatment. The mechanisms of entrance to...
ORGANISM(S): Staphylococcus Aureus (ncbitaxon:1280) 
2020-08-26 | MSV000086018 | MassIVE
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