3r - OmicsDI

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Transcriptomics (4693)
Unknown (1222)
Genomics (459)
Metabolomics (221)
Proteomics (174)
Other (8)
Models (3)
Multiomics (2)

Organisms

Homo sapiens (1375)
Mus musculus (853)
Arabidopsis thaliana (561)
Saccharomyces cerevisiae (287)
Drosophila melanogaster (252)
Rattus norvegicus (153)
Schizosaccharomyces pombe (83)
Caenorhabditis elegans (64)
Plasmodium falciparum (60)
Escherichia coli (54)
Bos taurus (45)
Mycobacterium tuberculosis (40)
Gallus gallus (38)
Candida albicans (36)
Staphylococcus aureus (33)
Rhizobium leguminosarum (29)
Streptomyces coelicolor (29)
Triticum aestivum (26)
Pseudomonas aeruginosa (25)
Pseudomonas putida (22)
Escherichia coli str. K-12 substr. MG1655 (19)
Bacillus subtilis (17)
Danio rerio (15)
Plasmodium falciparum 3D7 (15)
Oryza sativa (14)
Trypanosoma brucei (14)
Zea mays (13)
Sinorhizobium meliloti (13)
Shewanella piezotolerans WP3 (11)
Campylobacter jejuni (11)

Organisms

Drosophila melanogaster (22)
fungus metagenome (20)
Panicum virgatum (15)
Homo sapiens (15)
Arabidopsis thaliana (8)
Sorghum bicolor (6)
root metagenome (6)
soil metagenome (5)
Caenorhabditis elegans (3)
synthetic construct (2)
rhizosphere metagenome (2)
Mus musculus (2)
Pseudomonas chlororaphis O6 (1)
Lysobacter sp. SS4-3R (1)
Oryzihumus sp. JJN4-3R (1)
Xylophilus sp. PBN-3R (1)
Carcinoscorpius rotundicauda (1)
Pelagerythrobacter rhizovicinus (1)
Pedobacter sp. AW31-3R (1)
Arsenura armida (1)
Erwinia sp. HDF1-3R (1)
Escherichia coli CFT073 (1)
Bos indicus (1)
Cryptococcus neoformans (1)
Macaca fascicularis (1)
Priestia aryabhattai (1)
Triticum aestivum (1)
insect metagenome (1)
Oryza sativa (1)
seawater metagenome (1)

Repository

biostudies-arrayexpress (4978)
ENA (153)
MetaboLights (149)
MassIVE (87)
MetabolomicsWorkbench (71)
EGA (60)
jPOST (34)
geo (22)
pride (20)
iProX (11)
PanoramaPublic (6)
EVA (4)
GPMDB (3)
LINCS (3)
BioModels (2)
Cell Collective (1)
PAXDB (1)

Tissue

Blood (24)
Cultured cells (7)
Urine (7)
Feces (6)
Macrophages (5)
Plant (4)
Liver (4)
Embryo (4)
Brain (3)
Cell culture (3)
Mesenteric lymph (2)
Cells (2)
Heart (2)
Eye tissue (2)
Hep G2 cells (2)
Optic nerve (2)
Retina (2)
Follicular fluid (1)
Plasmodium cells (1)
Fibroblast cells (1)
Bone marrow (1)
Yeast cells (1)
Cecum (1)
Lung (1)
Bone (1)
Muscle (1)
Cerebrospinal fluid (1)
Luminal cell of prostate epithelium (1)
Central nervous system neuron (1)
Neuron of cerebral cortex (1)

Disease

Normal (29)
Neuroblastoma (6)
Melanoma (5)
Adenocarcinoma (4)
Breast cancer (4)
Primary tumor (3)
Breast adenocarcinoma (3)
Rheumatoid arthritis (3)
Chronic myelogenous leukemia (3)
Reference (3)
Prostate cancer (3)
Mitochondrial complex I deficiency (2)
Squamous Cell Carcinoma (2)
Porphyria NOS (2)
Leukemia (2)
Colon cancer (2)
Papillary thyroid carcinoma (2)
Not infected (2)
Cancer (2)
Mammary tumor (2)
Osteosarcoma (2)
Hepatocellular carcinoma (2)
Ovarian tumor (2)
Wilms tumour (2)
Multiple sclerosis (1)
Primary acute lymphoblastic leukemia (1)
Pretreatment primary leukemia (1)
LPS-induced acute lung injury (1)
Dermal neurofibroma (1)
Epithelioid mesothelioma (1)

Technology Type

Mass spectrometry (105)
Mass Spectrometry (91)
ESI (67)
Mass spectrometry assay (33)
NMR spectroscopy (14)
Shotgun proteomics (10)
Bottom-up proteomics (7)
Illumina HiSeq 2000 (3)
EI (3)
Data-independent acquisition (3)
Data-dependent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (3)
KINOMEscan (2)
Fluorescence intensity (2)
Unspecified (2)
NextSeq 550, ILLUMINA (1)
Illumina HiSeq 2500, ILLUMINA (1)
454 GS FLX Titanium, Illumina HiSeq 2000 (1)
Affymetrix_250K(Nsp) - gtype (1)
Mass spectrometry (1)
Chromatography, Mass spectrometry (1)

Instrument Platform

NextSeq 500 (102)
Illumina NovaSeq 6000 (98)
Illumina HiSeq 2000 (64)
Illumina HiSeq 2500 (61)
Illumina HiSeq 4000 (52)
NextSeq 550 (44)
Axon GenePix 4000A scanning hardware (20)
Axon- GenePix4000B (17)
GenePix 4000A [Axon Instruments] (16)
Scanning hardware (15)
Axon GenePix 4000B scanning hardware (15)
Illumina MiSeq (13)
Illumina HiSeq 1500 (12)
ScanArray 5000 [PerkinElmer] (11)
Illumina Genome Analyzer IIx (9)
G2565BA DNA microarray scanner [Agilent] (9)
NextSeq 2000 (9)
Chromium 10x (8)
ScanArray scanning hardware (8)
ScanArray 4000 [PerkinElmer] (8)
418 [Affymetrix] (8)
ScanArray 4000XL [PerkinElmer] (8)
GenePix 4000B [Axon Instruments] (8)
Bioanalyser (7)
Variable Atmosphere Incubator (7)
Microcentrifuge (6)
GenePix Personal 4100A [Axon Instruments] (6)
G2565AA DNA microarray scanner [Agilent] (6)
ScanArray Express HT [PerkinElmer] (6)
Illumina NovaSeq X (6)

Publication Date

2010 (686)
2013 (464)
2011 (455)
2012 (442)
2014 (418)
2008 (388)
2015 (377)
2009 (307)
2007 (246)
2016 (227)
2006 (145)
2005 (135)
2022 (132)
2021 (116)
2024 (98)
2017 (92)
2023 (89)
2020 (88)
2004 (87)
2018 (78)
2025 (76)
2019 (75)
2026 (67)
2003 (19)
2002 (1)

UNIPROT ID/AC

Q16MB4_AEDAE (1)
Q16GF8_AEDAE (1)
U518_AEDAE (1)
Q16ZT4_AEDAE (1)
Q17FS9_AEDAE (1)
TRMB_AEDAE (1)
Q17AP0_AEDAE (1)
Q17DX1_AEDAE (1)
Q0C738_AEDAE (1)
Q16PT8_AEDAE (1)
Q17CK8_AEDAE (1)
Q174R6_AEDAE (1)
Q16ML7_AEDAE (1)
Q16LW1_AEDAE (1)
Q171J5_AEDAE (1)
Q16W14_AEDAE (1)
Q16FJ9_AEDAE (1)
Q17MK2_AEDAE (1)
Q1HQZ2_AEDAE (1)
Q16H82_AEDAE (1)
Q17AI9_AEDAE (1)
Q16XR3_AEDAE (1)
Q17CA3_AEDAE (1)
Q17L48_AEDAE (1)
Q175D0_AEDAE (1)
Q17D69_AEDAE (1)
GLYR1_AEDAE (1)
Q17GY9_AEDAE (1)
J9HSX8_AEDAE (1)
Q17N65_AEDAE (1)

CHEBI ID

CHEBI:30769 (36)
CHEBI:15741 (32)
CHEBI:16335 (30)
CHEBI:16737 (30)
CHEBI:28044 (29)
CHEBI:24898 (28)
CHEBI:25017 (28)
CHEBI:15428 (28)
CHEBI:27266 (28)
CHEBI:17368 (28)
CHEBI:16919 (27)
CHEBI:18186 (26)
CHEBI:18237 (25)
CHEBI:28300 (25)
CHEBI:16708 (25)
CHEBI:17822 (24)
CHEBI:26271 (24)
CHEBI:25094 (24)
CHEBI:17268 (24)
CHEBI:7916 (24)
CHEBI:16704 (24)
CHEBI:30915 (24)
CHEBI:22660 (23)
CHEBI:6650 (23)
CHEBI:15891 (23)
CHEBI:15354 (23)
CHEBI:16811 (22)
CHEBI:27897 (22)
CHEBI:26986 (21)
CHEBI:17750 (21)

Metabolite Name

Creatinine (26)
Hypoxanthine (24)
Taurine (22)
Adenosine (22)
Uridine (22)
Adenine (21)
Guanosine (21)
Choline (19)
Xanthine (19)
Valine (17)
Guanine (17)
L-Glutamine (17)
Glutamine (17)
Cytidine (17)
Creatine (17)
Inosine (17)
Leucine (16)
Succinic acid (16)
Palmitic acid (16)
Azelaic acid (16)
Glycine (15)
Citrulline (15)
Deoxycholic acid (15)
Citric acid (15)
Stearic acid (15)
Asparagine (15)
Tyrosine (15)
Urocanic acid (15)
Alanine (15)
Proline (15)

IsPrivate

False (2)

First Public Date

2017 (28)
2023 (27)
2025 (22)
2026 (13)
2014 (12)
2018 (11)
2019 (8)
2022 (7)
2021 (6)
2015 (5)
2013 (5)
2024 (4)
2020 (4)
2016 (1)

Classification

bacteria (2)
fungi (1)

Modelling Approach

Ordinary differential equation model (2)

Study type

Transcription profiling by array (3341)
RNA-seq of coding RNA (494)
ChIP-seq (189)
Other (116)
RNA-seq of non coding RNA (100)
ChIP-chip by tiling array (81)
Unknown experiment type (66)
Comparative genomic hybridization by array (65)
ChIP-chip by array (59)
RNA-seq of coding RNA from single cells (57)
Transcription profiling by tiling array (47)
DNA-seq (25)
Methylation profiling by high throughput sequencing (24)
Methylation profiling by array (22)
Cell line - High-throughput sequencing (20)
RNA-seq of total RNA (20)
RIP-seq (17)
Proteomic profiling by array (16)
RNAi profiling by array (15)
High-throughput sequencing (12)
Ribo-seq (12)
RIP-chip by array (8)
Animal - Single-cell sequencing (8)
Animal - High-throughput sequencing (8)
Genotyping by array (8)
Human - High-throughput sequencing (7)
Translation profiling (7)
Single nucleus RNA sequencing (7)
MicroRNA profiling by array (7)
CLIP-seq (6)

Release Date

2010 (718)
2013 (506)
2011 (500)
2012 (489)
2014 (450)
2015 (434)
2008 (408)
2009 (340)
2016 (265)
2007 (254)
2022 (225)
2021 (179)
2023 (161)
2024 (160)
2006 (155)
2020 (154)
2025 (147)
2005 (144)
2019 (119)
2018 (118)
2017 (100)
2004 (88)
2026 (45)
2003 (25)
2002 (5)
2001 (3)
2000 (3)
1998 (3)
1999 (1)
1993 (1)

Lab affiliation

Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic (3)
Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)
Fraunhofer Attract Eco’n’OMICs, Fraunhofer Institute for Molecular Biology and Applied Ecology IME, Auf dem Aberg 1, 57392 Schmallenberg. (2)
CECAD Research Center, University of Cologne (Institute for Genetics) Joseph-Stelzmann-Str. 26 50931 Cologne Germany (1)
Université Catholique de Louvain (UCLouvain) and Institute of Neuroscience (IONS), 1200 Brussels, Belgium Cliniques universitaires Saint-Luc, Neurology Department, 1200 Brussels, Belgium Harvard Medical School, Massachusetts General Hospital, Department of Radiology, Gordon Center for Medical Imaging, Boston, MA, USA. (1)
CECAD Institute, University of Cologne Joseph-Stelzmann-Straße 26 50931 Cologne Germany (1)
Paris-Saclay Institute of Neuroscience, and CEA, Institut François Jacob, Université Paris-Saclay, Team Melki, CNRS, Gif-sur-Yvette, France (1)
Department of Pharmaceutical/Medicinal Chemistry, Institute of Pharmacy, Friedrich Schiller University Jena, Philosophenweg 14, 07743 Jena, Germany (1)
1Department of Neurodegenerative Science, Van Andel Institute (1)
Barshop Institute for Longevity and Aging Studies, Department of Cell Systems and Anatomy, UT San Antonio (1)
Environmental Proteomics Department of Biomedical and Clinical Sciences (BKV) Division of Cell Biology (CELLB), level 13 Medical Faculty Linköping University, SE-581 85 Linköping, Sweden. (1)
Scripps Research (1)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany (1)
Tanz Centre for Research in Neurodegenerative Diseases, Faculty of Medicine, University of Toronto (1)
Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)

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Mitochondrial metabolism sustains DNMT3A-R882-mutant clonal haematopoiesis

Somatic DNMT3A R882 codon mutations drive the most common form of clonal haematopoiesis (CH) and are associated with increased acute myeloid leukaemia (AML) risk1,2. Preventing expansion of DNMT3A-R882-mutant haematopoietic stem/progenitor cells (HSPCs) may therefore avert progression to AML. To ide...

2025-02-06 | MTBLS12201 | MetaboLights

Pedobacter sp. AW31-3R isolate:AW31-3R

Pedobacter sp. AW31-3R isolate:AW31-3R Genome sequencing

PRJNA1282397 | ENA

Erwinia sp. HDF1-3R isolate:HDF1-3R

Erwinia sp. HDF1-3R isolate:HDF1-3R Genome sequencing

PRJNA1102647 | ENA

Pelagerythrobacter rhizovicinus strain:AY-3R

Pelagerythrobacter rhizovicinus strain:AY-3R Genome sequencing and assembly

PRJNA516858 | ENA

Xylophilus sp. PBN-3R

Xylophilus sp. PBN-3R Genome sequencing

PRJNA1466049 | ENA

Lysobacter sp. SS4-3R

Lysobacter sp. SS4-3R Genome sequencing

PRJNA1466080 | ENA

Oryzihumus sp. JJN4-3R

Oryzihumus sp. JJN4-3R Genome sequencing

PRJNA1466066 | ENA

Priestia aryabhattai strain:NAU-GA-PR-3R

Priestia aryabhattai strain_NAU-GA-PR-3R Genome sequencing

PRJNA1455129 | ENA

Expression data from docetaxel-resistant prostate cancer cell lines

Docetaxel-based chemotherapy is the standard first-line therapy in metastatic castration-resistant prostate cancer. However, most patients eventually develop resistance to this treatment. The aim of the study was to identify key molecular genes and networks associated with docetaxel resistance in 2 ...

ORGANISM(S): Homo sapiens

2012-01-01 | E-GEOD-33455 | biostudies-arrayexpress

C1_FDSW210041272-1r C1_FDSW210041272-2r C1_FDSW210041272-3r C2_FDSW210041273-1r C2_FDSW210041273-2r C2_FDSW210041273-3r C3_FDSW210041274-1r C3_FDSW210041274-2r C3_FDSW210041274-3r C4_FDSW210041275-1r C4_FDSW210041275-2r C4_FDSW210041275-3r

PRJNA891020 | ENA

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6827 Results

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