A Koh K - OmicsDI

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Unknown (1513)
Transcriptomics (322)
Genomics (159)
Proteomics (154)
Metabolomics (12)
Other (2)

Organisms

Caenorhabditis elegans (164)
Mus musculus (59)
Homo sapiens (58)
Saccharomyces cerevisiae (49)
Arabidopsis thaliana (29)
Drosophila melanogaster (17)
Schizosaccharomyces pombe (15)
Ralstonia solanacearum (8)
Escherichia coli (7)
Escherichia coli str. K-12 substr. MG1655 (6)
Rattus norvegicus (6)
Zea mays (5)
Corynebacterium glutamicum (4)
Mycobacterium tuberculosis H37Rv (4)
Saccharomyces cerevisiae SK1 (3)
Candida albicans (2)
Klebsormidium nitens (1)
Saponaria officinalis (1)
Amphimedon queenslandica (1)
Camponotus floridanus (1)
Lactococcus lactis (1)
Streptococcus mutans UA159 (1)
Aspergillus niger (1)
Synechocystis sp. PCC 6803 (1)
Kluyveromyces lactis (1)
Yarrowia lipolytica (1)
Listeria monocytogenes EGD-e (1)
Brassica rapa (1)
Xenopus tropicalis (1)
Bacillus subtilis (1)

Organisms

Homo sapiens (6)
Saccharomyces cerevisiae (5)
Mus musculus (3)

Repository

biostudies-arrayexpress (456)
pride (141)
ENA (15)
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geo (6)
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Disease

Acute leukemia (8)
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Disease free (2)
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Chronic myeloid leukemia (1)
Cockayne syndrome (1)
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Huntington Disease (1)
Kidney cancer (1)
Leishmaniasis (1)
Lung cancer (1)
Lung mixed small cell and squamous cell carcinoma (1)
Osteosarcoma (1)
Papillary renal cell carcinoma (1)
Prolymphocytic leukemia (1)

Technology Type

Mass Spectrometry (141)
Shotgun proteomics (56)
Affinity purification coupled with mass spectrometry proteomics (34)
Bottom-up proteomics (22)
Data-dependent acquisition (16)
Data-independent acquisition (14)
Gel-based experiment (11)
SWATH MS (11)
Mass spectrometry (10)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Mass spectrometry assay (2)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Illumina HiSeq 2000, Infinium HumanMethylation450 BeadChip (1)
Affinity proteomics (1)
HDMSE (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (13)
NextSeq 500 (10)
Illumina HiSeq 2500 (9)
Illumina HiSeq 2000 (8)
Liquid Chromatography MS - positive - reverse phase (6)
Illumina HiSeq 4000 (5)
Axon GenePix 4000B scanning hardware (4)
NextSeq 550 (4)
NextSeq 2000 (2)
Illumina MiSeq (2)
Orbitrap Exploris 480 (2)
Q Exactive (2)
Using NEBNext Ultra II DNA Library (1)
Aspara® Smart Grower Hydroponic (1)
RiboZ (1)
Trizol (Invitrogen); FastPrep (MP Biochemicals) (1)
DASGIP bioreactors (1)
GenePix 4000A [Axon Instruments] (1)
GenePix 4000B [Axon Instruments] (1)
Scanning hardware (1)
Illumina NovaSeq X (1)
Ion Torrent PGM (1)
Ion Torrent Proton (1)
NovaSeq PE150 (1)
Spectrum™ Plant Total RNA Kit (1)
MinION (1)
6540 Q-TOF LC/MS (1)
LTQ (1)
Thermo Fusion Lumos (1)
TripleTOF 5600 (1)

Publication Date

2013 (92)
2010 (91)
2012 (48)
2014 (36)
2025 (35)
2015 (32)
2011 (32)
2021 (31)
2016 (30)
2023 (29)
2026 (26)
2024 (26)
2009 (23)
2022 (21)
2020 (16)
2008 (13)
2018 (12)
2019 (11)
2006 (7)
2007 (6)
2017 (5)
2005 (4)
2004 (2)

CHEBI ID

CHEBI:16761 (4)
CHEBI:16610 (3)
CHEBI:32816 (3)
CHEBI:15422 (3)
CHEBI:27897 (3)
CHEBI:17509 (3)
CHEBI:17552 (3)
CHEBI:16027 (3)
CHEBI:28300 (3)
CHEBI:30915 (3)
CHEBI:18346 (2)
CHEBI:15603 (2)
CHEBI:15713 (2)
CHEBI:16680 (2)
CHEBI:15729 (2)
CHEBI:15971 (2)
CHEBI:17148 (2)
CHEBI:17196 (2)
CHEBI:17115 (2)
CHEBI:30797 (2)
CHEBI:17239 (2)
CHEBI:17677 (2)
CHEBI:15428 (2)
CHEBI:15996 (2)
CHEBI:15746 (2)
CHEBI:17895 (2)
CHEBI:18019 (2)
CHEBI:16015 (2)
CHEBI:16865 (2)
CHEBI:22653 (2)

Metabolite Name

Creatine (3)
Myo-inositol (2)
Spermidine (2)
Putrescine (2)
Glycine (2)
Vanillin (2)
Taurine (2)
Xanthine (2)
Lipid alpha-CH2 (1)
Lipid -CH2-CH= (1)
Lipid beta-CH2 (1)
Lipid (-CH2)n (1)
Lipid omega-CH3 (1)
N(1)-acetylspermidine (1)
L-homocysteine (1)
L-cysteinylglycine (1)
L-alpha-aminobutyric acid (1)
Glycerophosphorylcholine (1)
Fructose-1,6-Bisphosphate (1)
Sedoheptulose-7-Phosphate (1)
AlphaKetoglutarate (1)
3beta,14beta,21-trihydroxy-5beta-pregnane-20-one (1)
3beta,14beta-dihydroxy-5beta-pregnane-20-one (1)
3-hydroxypregnane-5,7-dien-20-one (1)
3beta-hydroxy-5beta-pregnane-20-one (1)
S-adenosyl-L-methioninate (1)
TTP (1)
Gamma-linolenic acid (1)
5-Methoxy-3-indoleacetic acid (1)
Alpha linolenic acid (1)

First Public Date

2025 (5)
2023 (4)
2021 (3)
2026 (1)
2024 (1)
2014 (1)

Modification

N6 (1)
N6-dimethyl-L-lysine (1)

Study type

ChIP-chip by tiling array (149)
ChIP-seq (132)
Transcription profiling by array (78)
ChIP-chip by array (35)
RNA-seq of coding RNA (26)
CUT&RUN (8)
High-throughput sequencing (5)
Comparative genomic hybridization by array (5)
Other (3)
Methylation profiling by array (3)
Cell line - High-throughput sequencing (2)
RIP-seq (2)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
DNA-seq (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (179)
2020 (177)
2025 (172)
2021 (168)
2023 (163)
2024 (157)
2013 (117)
2019 (114)
2010 (105)
2018 (98)
2016 (78)
2015 (76)
2014 (69)
2012 (69)
2017 (61)
2011 (49)
2009 (38)
2026 (34)
2008 (18)
2006 (9)
2007 (8)
2005 (5)
2004 (4)
2003 (1)

Lab affiliation

Donnelly Centre for Cellular and Biomolecular Research, Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (3)
1 Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China 2 Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (2)
1. Department I of Internal Medicine, Center for Integrated Oncology (CIO), Aachen-Bonn- Cologne-Duesseldorf, Excellence Cluster for Cellular Stress Response and Aging-Associated Diseases (CECAD), Center for Molecular Medicine Cologne (CMMC), University of Cologne (UoC), 50937 Cologne, Germany 2. Department of Hematology and Cellular Therapy, University of Leipzig, Leipzig, Germany (2)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (2)
Cardiac Bioengineering group, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia (2)
Department of Modeling of Biological Processes COS, Heidelberg University (2)
Departments of Immunology and Cell Biology Faculty of Medicine and Health Sciences Université de Sherbrooke Sherbrooke, QC J1H 5N4 Canada (2)
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), 1030 Vienna, Austria. (2)
Molecular Genetics, RPTU Kaiserslautern, Germany (2)
School of Basic Medical Science, Peking University, China (2)
-Translational Cardiomyology Laboratory, Stem Cell and Developmental Biology, Department of Development and Regeneration, KU Leuven, Leuven, Belgium -Histology and Medical Embryology Unit, Department of Anatomy, Histology, Forensic Medicine and Orthopaedics, Sapienza University of Rome, Rome, Italy (1)
1 Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 2 Center for Plant Biology, Purdue University, West Lafayette, IN 3 Department of Biological Sciences, Purdue University, West Lafayette, IN (1)
1 Interdisciplinary Research Center on Biology and Chemistry, State Key Laboratory of Chemical Biology, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China 2 Shanghai Academy of Natural Sciences (SANS), Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 201210, China (lab head) (1)
1, Department of Biology, Institute of Molecular Systems Biology, ETH, Zurich, Switzerland 2, Faculty of Science, University of Zurich, Zurich, Switzerland (1)
1. Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2. Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3. Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
1. School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China 2. Centre for Soybean Research of the State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China (1)
1.Department of Biochemistry, Faculty of Science, Kasetsart University, 50 Ngam Wong Wan Road, Chatuchak, Bangkok 10900, Thailand 2.Center for Advanced Studies in Nanotechnology for Chemical, Food and Agricultural Industries, KU Institute for Advanced Studies, Kasetsart University, Bangkok, 10900, Thailand (1)
1.MRC Weatherall Institute of Molecular Medicine, University of Oxford, John Radcliffe Hospital, Oxford OX3 9DS, UK 2.CRUK/MRC Oxford Institute for Radiation Oncology, Department of Oncology, University of Oxford, Oxford OX3 7DQ, UK (1)
1Center for Neuroscience, Faculty of Science, Mahidol University, Bangkok, 10400, Thailand 2Interdisciplinary Graduate Program in Genetic Engineering, Kasetsart University, Bangkok, 10900, Thailand (1)
1Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
Aalborg University (1)
Assoc Prof Konstantin Pervushin SCHOOL OF BIOLOGICAL SCIENCES, Nanyang Technological University (1)
Associate Professor, Department of Biology, Massachusetts Institute of Technology and Whitehead Institute of Biomedical Research (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine 269 Campus Drive CCSR 3205b Stanford, CA 94305-5175 (1)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. (1)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing, China (1)
Biochemistry & Molecular Biology Department and Plant Resilience Institute, Michigan State University (1)
Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; Quantitative Biology Center (QBiC), University of Tübingen, Germany; Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany; (1)
Biotechnology and Cell Signaling, UMR 7242, Strasbourg, France (1)

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Control of cyanobacterial growth with potassium; implications for bloom control in nuclear storage ponds

Microbial blooms have been reported in the First Generation Magnox Storage Pond at the Sellafield Nuclear Facility. The pond is kept alkaline with NaOH to minimise fuel rod corrosion, however alkali-tolerant microbial blooms dominated by the cyanobacterium Pseudanabaena catenata are able to thrive i...

ORGANISM(S): Cyanobacteria

2024-05-15 | PXD052268 |

A cytochrome P450 CYP87A4 imparts sterol side-chain cleavage in digoxin biosynthesis

Digoxin extracted from the foxglove plant is a widely prescribed natural product for treating heart failure. It is listed as an essential medicine by the World Health Organization. However, how the foxglove plant synthesizes digoxin is mostly unknown, especially the cytochrome P450 sterol side chain...

2025-07-03 | MTBLS7993 | MetaboLights

A New Force Field for OH^- for Computing Thermodynamic and Transport Properties of H₂ and O₂ in Aqueous NaOH and KOH Solutions.

Not available

S-EPMC9677430 | biostudies-literature

AspSnFR: A Genetically-Encoded Biosensor for Real-Time Monitoring of Aspartate in Live Cells

Aspartate is crucial for nucleotide synthesis, ammonia detoxification and maintaining redox balance via the malate-aspartate-shuttle (MAS). To disentangle these multiple roles of aspartate metabolism, tools are required that measure aspartate concentrations in real time and in live cells. We intr...

2024-08-27 | MTBLS10035 | MetaboLights

An alternative, arginase-independent pathway for arginine metabolism in Kluyveromyces lactis involves guanidinobutyrase as a key enzyme

Most available knowledge on fungal arginine metabolism is derived from studies on Saccharomyces cerevisiae, in which arginine catabolism is initiated by releasing urea via the arginase reaction. Orthologs of the S. cerevisiae genes encoding the first three enzymes in the arginase pathway were cloned...

ORGANISM(S): Kluyveromyces lactis

2014-07-16 | E-GEOD-56060 | biostudies-arrayexpress

PRDM15 is a master regulator of metabolism essential to sustain B-cell lymphomagenesis

PRDM family members are sequence-specific transcriptional regulators involved in cell identity and fate determination and are often dysregulated in cancer. The PRDM15 gene is of particular interest, given its relatively low expression in adult tissues and its overexpression in follicular lymphomas (...

2025-06-16 | MTBLS1639 | MetaboLights

Kappa-on-Heavy (KoH) bodies are a distinct class of fully-human antibody-like therapeutic agents with antigen-binding properties.

Not available

S-EPMC6955234 | biostudies-literature

K-paracelsian (KAlSi3O8·H2O) and identification of a simple building scheme of dense double-crankshaft zeolite topologies.

Not available

S-EPMC6327177 | biostudies-literature

Ultrahigh capacitive performance from both Co(OH)₂/graphene electrode and K₃Fe(CN)₆ electrolyte.

Not available

S-EPMC3798881 | biostudies-literature

Enhanced Assembling of N-and-K-Riched Macroalgae as Carbon Adsorbent for CO₂ Capture with Ni(NO₃)₂/KOH as Co-Catalysts.

Not available