A Rong R - OmicsDI

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Unknown (867)
Proteomics (115)
Transcriptomics (63)
Metabolomics (15)
Multiomics (13)
Genomics (10)
Other (1)

Organisms

Homo sapiens (94)
Mus musculus (51)
Saccharomyces cerevisiae (9)
Rattus norvegicus (5)
Pimephales promelas (2)
Staphylococcus aureus (2)
Ailuropoda melanoleuca (2)
Bos taurus (2)
Arabidopsis thaliana (2)
Tetranychus urticae (1)
Oryza sativa (1)
Triticum aestivum (1)
Candida albicans (1)
Danio rerio (1)
Aphis craccivora (1)
Bos indicus (1)
Caenorhabditis elegans (1)
Ctenopharyngodon idella (1)
Enterobacter kobei (1)
Escherichia coli (1)
Ficophagus sp. ex Ficus hirta var. roxburghii YN-3 (1)
Ficus hirta var. roxburghii (1)
Gossypium barbadense (1)
Halomonas (1)
Macaca fascicularis fascicularis (1)
Middle East respiratory syndrome-related coronavirus (1)
Ovis aries (1)
Polygonatum cyrtonema (1)
Sesamum indicum (1)
Zea mays (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (69)
iProX (60)
pride (30)
PeptideAtlas (16)
MetaboLights (14)
EGA (6)
MassIVE (4)
jPOST (3)
GNPS (1)
GPMDB (1)
ENA (1)

Tissue

Others (11)
Cell culture (9)
Epithelial cell (5)
Plasma Non-glyco (3)
Blood plasma (2)
Heart (2)
Lung (2)
Ovary (2)
Testis (2)
Acute myeloid leukemia cell (1)
B cell (1)
Blood (1)
Blood cell (1)
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Brain (1)
Leaf (1)
Lung cancer cell line (1)
Microglial cell (1)
Plant cell (1)
Prostate epithelium (1)
Skin (1)
Whole body (1)

Disease

Breast cancer (3)
SS2-infected (1)
Not Available (1)
Acute leukemia (1)
Cervix carcinoma (1)
Disease free (1)
Hyperhomocysteinemia (1)
Obesity (1)
Prostate adenocarcinoma (1)
Type 2 diabetes mellitus (1)
Uveitis (1)

Technology Type

Mass Spectrometry (30)
Mass spectrometry (13)
Shotgun proteomics (13)
Gel-based experiment (6)
Bottom-up proteomics (4)
Data-independent acquisition (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
Illumina HiSeq 2000 (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (14)
Liquid Chromatography MS - negative - reverse phase (7)
Liquid Chromatography MS - positive - reverse phase (7)
Illumina HiSeq 2000 (4)
Orbitrap Fusion Lumos (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
LCQ Classic (2)
Illumina NovaSeq 6000 (1)
Instrument (1)
LTQ Orbitrap (1)
Q Exactive HF (1)
TripleTOF 5600 (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - positive - reverse-phase (1)

Publication Date

2012 (28)
2024 (21)
2025 (19)
2023 (18)
2021 (16)
2022 (16)
2026 (11)
2015 (10)
2010 (10)
2020 (8)
2014 (8)
2011 (7)
2008 (7)
2016 (6)
2013 (5)
2019 (4)
2004 (2)
2017 (1)

UNIPROT ID/AC

A0A0A0MS51 (14)
A5A3E0 (14)
B4DPR2 (14)
B4E3A4 (14)
B7Z9A0 (14)
H0Y5C6 (14)
I3L4N8 (14)
J3KPS3 (14)
P00488 (14)
P01024 (14)
P02042 (14)
P02671 (14)
P02671-2 (14)
P02675 (14)
P02768 (14)
P02775 (14)
P02776 (14)
P02788 (14)
P04040 (14)
P04075 (14)
P04075-2 (14)
P04259 (14)
P04264 (14)
P04275 (14)
P06396 (14)
P06396-3 (14)
P07195 (14)
P07359 (14)
P07996 (14)
P08238 (14)

ENSEMBL ID

ENSG00000170477 (7)
ENSG00000229353 (3)
ENSG00000147251 (1)

CHEBI ID

CHEBI:16919 (6)
CHEBI:7916 (6)
CHEBI:15354 (5)
CHEBI:15843 (5)
CHEBI:16027 (5)
CHEBI:17015 (5)
CHEBI:17351 (5)
CHEBI:17562 (5)
CHEBI:17596 (5)
CHEBI:17750 (5)
CHEBI:27897 (5)
CHEBI:28867 (5)
CHEBI:30769 (5)
CHEBI:36005 (5)
CHEBI:15727 (4)
CHEBI:15741 (4)
CHEBI:15756 (4)
CHEBI:15891 (4)
CHEBI:15971 (4)
CHEBI:16015 (4)
CHEBI:16020 (4)
CHEBI:16196 (4)
CHEBI:16235 (4)
CHEBI:16335 (4)
CHEBI:16704 (4)
CHEBI:16737 (4)
CHEBI:16750 (4)
CHEBI:16811 (4)
CHEBI:16962 (4)
CHEBI:17154 (4)

Metabolite Name

Arachidonic acid (4)
Docosahexaenoic acid (4)
Adenine (3)
Betaine (3)
Creatinine (3)
D-Glucosamine 6-phosphate (3)
DUMP (3)
Fumaric acid (3)
Gluconic acid (3)
Glycocholic acid (3)
Guanine (3)
Hippuric acid (3)
L-Arginine (3)
L-Phenylalanine (3)
L-Tyrosine (3)
Methyldopa (3)
N-Acetyl-L-aspartic acid (3)
Palmitic acid (3)
Pantothenic acid (3)
Pentadecanoic Acid (3)
Thymidine (3)
(+/-)12(13)-DiHOME (2)
1-Methyladenosine (2)
1-Methylnicotinamide (2)
10-Hydroxydecanoic acid (2)
13(S)-HOTrE (2)
13,14-dihydro Prostaglandin E1 (2)
13,14-dihydro-15-keto Prostaglandin A2 (2)
16-Hydroxy hexadecanoic acid (2)
2,4-Dichlorophenol (2)

First Public Date

2021 (1)

Modification

57.021464 (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (12)
Comparative genomic hybridization by array (7)
Unknown experiment type (2)
ChIP-seq (2)
Proteomic profiling by array (2)
Human - One-color microarray (1)
RNAi profiling by array (1)
Other (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (125)
2022 (111)
2024 (104)
2023 (99)
2021 (92)
2020 (76)
2019 (52)
2018 (38)
2016 (36)
2015 (34)
2017 (29)
2014 (27)
2026 (26)
2012 (23)
2013 (17)
2010 (14)
2011 (13)
2008 (10)
2009 (4)
2007 (2)
2005 (2)
2003 (1)
2000 (1)

Lab affiliation

State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (3)
Jiangnan University (2)
1F, Bldg A, No.18 Science Park Road, Life Science Park, Changping District, Beijing 102206, P. R. China (1)
Associate Professor, Division of Hematology, Department of Internal Medicine, The Ohio State University Wexner Medical Center (1)
Beijing Advance Innovation Center for Food Nutrition and Human Health, Beijing Laboratory of Food Quality and Safety, Beijing Engineering and Technology Research Center of Food Additives, Beijing Technology and Business University (BTBU), Beijing 100048, China (1)
Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences (1)
Department of Chemistry, Brandeis University, US (1)
Department of Comparative Medicine, Laboratory Animal Center, Dalian Medical University, Dalian, Liaoning 116000, P.R. China (1)
Department of Gastroenterology, the first affiliated hospital of Nanchang University. (1)
Department of Neurology, Renmin Hospital of Wuhan University, Wuhan, Hu Bei Province, 430060, China (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Germany (1)
Director, Institute for Tissue Engineering and Regenerative Medicine (iTERM) Helmholtz Zentrum München Ingolstädter Landstraße 1 85764 Neuherberg Germany (1)
Division of Plastic and Reconstructive Surgery, The First Affiliated Hospital of Sun Yat-sen University (1)
Genetics and Genomic Sciences (1)
Helmholtz Munich (1)
Institute of Biotechnology, College of Life Science, National Tsing Hua University, Taiwan Department of Medical Science, National Tsing Hua University, Taiwan (1)
Institute of Blood Transfusion, Chinese Academy of Medical Sciences & Peking Union Medical College, Chengdu 610052, China (1)
Key Laboratory of Quantitative Synthetic Biology, Shenzhen Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences.Shenzhen 518055，China (1)
Key Laboratory of Systems Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences Department of Life Sciences, ShanghaiTech University (1)
MOE Key Laboratory for Biosystems Homeostasis and Protection and Innovation Center for Cell Signaling Network, Fan lab, Life Sciences Institute, Zhejiang University (1)
NHC Key Laboratory of Study on Abnormal Gametes and Reproductive Tract, Anhui Medical University, Anhui, China. (1)
NHC Key Laboratory of Study on Abnormal Gametes and Reproductive Tract, Anhui Medical University, Hefei, Anhui, China. (1)
Nanjing Agricultural Univeristy, Nanjing, China (1)
Ophthalmology Medical Center，The First Affiliated Hospital of Chongqing Medical University，Chongqing Key Laboratory for the Prevention and Treatment of Major Blinding Eye Diseases，Chongqing Branch (Municipality Division) of National Clinical Research Centre for Ocular Diseases (1)
Reproductive Medicine Center, General Hospital of Ningxia Medical University, Ningxia, China (1)
Shanghai Center for Plant Stress Biology, CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China (1)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (lab head) (1)

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MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Mouse liver assays)

We have developed MetaboKit, a comprehensive software package for compound identification and relative quantification in mass spectrometry-based untargeted metabolomics analysis. In data dependent acquisition (DDA) analysis, MetaboKit constructs a customized spectral library with compound identit...

2021-11-02 | MTBLS1266 | MetaboLights

MetaboKit: a comprehensive data extraction tool for untargeted metabolomics (Standard mixture assay)

2021-11-05 | MTBLS1311 | MetaboLights

Unsuccessful attempt at gene-editing by homologous recombination in the zebrafish germ line using the approach of "Rong and Golic".

Not available

S-EPMC3432782 | biostudies-literature

GWLD: an R package for genome-wide linkage disequilibrium analysis.

Not available

S-EPMC10468308 | biostudies-literature

Comparison of the Metabolic Profiles in the Plasma and Urine Samples Between Autistic and Typically Developing Boys: A Preliminary Study

Background: Autism spectrum disorder (ASD) is defined as a pervasive developmental disorder which is caused by genetic and environmental risk factors. Besides the core behavioral symptoms, accumulated results indicate children with ASD also share some metabolic abnormalities. Objectives:

2022-03-02 | MTBLS2421 | MetaboLights

Molecular mechanisms vascular smooth muscle cell (VSMC) acquisition of macrophage features in response to cholesterol loading

In this study, murine primary aortic smooth muscle cells (SMCs) were transcriptionally profiled at baseline, after 3 d of cholesterol loading, and after 3 d of subsequent cholesterol unloading with HDL treatment, to identify vascular SMC genes that are transcripionally dysregulated in response to ch...

ORGANISM(S): Mus musculus

2015-02-06 | E-GEOD-47744 | biostudies-arrayexpress

Lactobacillus plantarum MR1 alleviates high-carbohydrate diet-induced oxidative stress and liver lipid deposition via upregulating uridine synthesis

The overconsumption of carbohydrates induces oxidative stress and lipid accumulation in the liver, which can be alleviated by modulation of intestinal microbiota; however, the underlying mechanism remains unclear. Here, we demonstrated that a strain affiliated with Lactobacillus plantarum (de...

2024-01-16 | MTBLS4262 | MetaboLights

Transcriptional profile changes after treatment of ischemia reperfusion injury-induced kidney fibrosis with 18β-glycyrrhetinic acid.

Not available

S-EPMC9225714 | biostudies-literature

Dual activators of protein kinase R (PKR) and protein kinase R-like kinase PERK identify common and divergent catalytic targets.

Not available

S-EPMC3808843 | biostudies-literature

Analysis of lncRNA and mRNA Repertoires in Lung From BAFF-R-Deficient Pneumocystis-Infected Mice.

Not available

S-EPMC9238325 | biostudies-literature