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Unknown (69790)
Transcriptomics (3288)
Genomics (1559)
Proteomics (1357)
Metabolomics (198)
Models (62)
Genomic (31)
Other (28)
Methylation profiling (24)
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Organisms

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Homo sapiens (405)
Mus musculus (199)
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Rattus norvegicus (30)
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chicken gut metagenome (4)
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Oryza sativa Japonica Group (3)
Fusarium flagelliforme (2)
Piaractus mesopotamicus (2)
Linnemannia elongata (2)
Marinomonas sp. RS-M-Aa-14 (2)

Repository

biostudies-arrayexpress (3025)
ENA (1231)
pride (1105)
geo (549)
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dbGaP (31)
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Tissue

Cell culture (194)
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Urine (1)

Disease

Melanoma (11)
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Reference (2)
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Myeloid neoplasm (1)
Rett syndrome (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Chordoma (1)
Colorectal cancer recurrence-free (1)
Hign immune pressure (1)
Portal hypertension (1)
Glioma (1)
Xenografts with H1299 cell line (1)
Chronic granulomatous disease (1)
Marsh 3 (1)
Hereditary pheochromocytoma (1)
Represent tolerant CD4+ T cells that have not been activated (1)
Porphyria NOS (1)
IRAK-4 Q293X mutation (1)
None- acute control (1)
Colonic adenocarcinoma (1)

Technology Type

Mass Spectrometry (1143)
Shotgun proteomics (583)
Bottom-up proteomics (203)
Mass spectrometry (115)
Affinity purification coupled with mass spectrometry proteomics (109)
Data-dependent acquisition (104)
Gel-based experiment (81)
Data-independent acquisition (75)
SWATH MS (35)
Top-down proteomics (35)
Chemical cross-linking coupled with mass spectrometry proteomics (35)
ESI (30)
Mass spectrometry assay (25)
SRM/MRM (17)
EI (8)
All-ion fragmentation (8)
NMR spectroscopy (7)
DiaPASEF (7)
Other (2)
NMR (2)
Illumina HiSeq 4000, ILLUMINA, Illumina HiSeq 2000 (1)
COMPLETE_GENOMICS, Complete Genomics (1)
Complete Genomics (COMPLETE_GENOMICS) (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
AB 5500 Genetic Analyzer (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Illumina HiSeq 2000, Affymetrix 250K Nsp-GTYPE (1)
Illumina HiSeq 2000 (1)
MALDI (1)

Instrument Platform

Illumina NovaSeq 6000 (44)
Illumina HiSeq 2000 (23)
NextSeq 500 (15)
Illumina HiSeq 2500 (12)
NextSeq 550 (10)
Illumina HiSeq 4000 (9)
Axon- GenePix4000B (8)
GenePix Professional 4200A [Axon Instruments] (6)
GenePix 4000B [Axon Instruments] (6)
Illumina Genome Analyzer II (6)
Illumina HiSeq 1500 (6)
Illumina Genome Analyzer IIx (5)
Scanning hardware (5)
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None (3)
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. (2)
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418 [Affymetrix] (2)
G2565BA DNA microarray scanner [Agilent] (2)
Axon GenePix 4000B scanning hardware (2)
NA (2)

Publication Date

2010 (479)
2015 (445)
2013 (419)
2014 (410)
2012 (322)
2025 (285)
2011 (268)
2024 (258)
2022 (249)
2023 (239)
2016 (230)
2021 (216)
2026 (203)
2008 (184)
2020 (169)
2009 (157)
2019 (120)
2007 (111)
2018 (103)
2005 (86)
2017 (76)
2006 (56)
2004 (14)
2003 (9)
2002 (6)

UNIPROT ID/AC

A0A516GHF6 (1)
A0A516GI62 (1)
A0A1S8KLP3 (1)
A0A516GIL8 (1)
A0A516GHA2 (1)
A0A516GK59 (1)
A0A328KB23 (1)
A0A516GHF8 (1)
A0A516GHZ8 (1)
A0A328KG15 (1)
A0A516GHD7 (1)
A0A516GIH9 (1)
A0A516GKD6 (1)
A0A1S8KPN1 (1)
A0A516GHM9 (1)
A0A1S8KP79 (1)
A0A1S8KP82 (1)
A0A516GK60 (1)
A0A516GI34 (1)
A0A1S8KPH4 (1)
A0A516GGF9 (1)
A0A516GLA9 (1)
A0A328KU01 (1)
A0A328KB09 (1)
A0A1S8KP34 (1)
A0A516GKS7 (1)
A0A328KFV5 (1)
A0A1S8KPI3 (1)
A0A328KNH5 (1)
A0A516GJJ4 (1)

ENSEMBL ID

ENSG00000170477 (61)
ENSG00000229353 (28)
ENSG00000147251 (11)
ENSG00000176092 (2)
ENSG00000247315 (1)

CHEBI ID

CHEBI:15428 (77)
CHEBI:17568 (62)
CHEBI:17268 (62)
CHEBI:16750 (57)
CHEBI:17154 (56)
CHEBI:16865 (55)
CHEBI:17748 (53)
CHEBI:16958 (53)
CHEBI:17562 (52)
CHEBI:18107 (51)
CHEBI:16680 (50)
CHEBI:17790 (37)
CHEBI:11851 (37)
CHEBI:18191 (37)
CHEBI:29157 (37)
CHEBI:17158 (37)
CHEBI:29034 (37)
CHEBI:29033 (37)
CHEBI:29103 (37)
CHEBI:17544 (37)
CHEBI:17232 (37)
CHEBI:16189 (37)
CHEBI:16240 (37)
CHEBI:17013 (37)
CHEBI:29032 (37)
CHEBI:16016 (37)
CHEBI:17694 (37)
CHEBI:15377 (37)
CHEBI:16842 (37)
CHEBI:15379 (37)

Metabolite Name

Uridine (21)
Creatine (21)
Hypoxanthine (20)
Glycine (18)
Uracil (17)
Glutamine (17)
Xanthine (17)
Creatinine (17)
Inosine (17)
Valine (16)
Methionine (16)
Taurine (16)
Guanine (16)
Phenylalanine (16)
Cholic acid (15)
Adenosine (15)
Sucrose (15)
Tryptophan (15)
Betaine (14)
Tyrosine (14)
L-Glutamine (14)
Adenine (14)
Ornithine (13)
L-Arginine (13)
Malic acid (13)
Alanine (13)
Proline (13)
Isoleucine (13)
Guanosine (13)
Histidine (12)

First Public Date

2024 (167)
2025 (163)
2014 (149)
2026 (99)
2023 (96)
2022 (88)
2021 (83)
2020 (74)
2019 (69)
2013 (66)
2018 (60)
2017 (46)
2015 (43)
2016 (28)

Modelling Approach

Other (14)
Ordinary differential equation model (10)
Constraint-based model (4)
Metabolic network (1)

Study status

Recruiting (7)
Terminated (1)
Completed (1)

Lab affiliation

University of Victoria (14)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (13)
Associate Member, St. Jude Faculty Developmental Neurobiology St. Jude Children's Research Hospital Memphis, TN-38105 (10)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Bioplatforms Australia (7)
EDyP (7)
Plateforme Oncoprot, TBM-Core US 005, F-33000 Bordeaux, France (6)
Professor and Deputy Director, Center for Systems Biology and Molecular Medicine, Yenepoya Research Centre, Yenepoya (Deemed to be University), University Road, Deralakatte, Mangalore 575018, India (6)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (5)
Department of Chemistry and Biotechnology, Graduate School of Engineering, University of Tokyo, Bunkyo-ku, Tokyo 113-8656, Japan. (4)
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Stockholm, Sweden (4)
Dpt. of Immunobiology University of Lausanne (UNIL), Boveresses 155 CH-1066 Epalinges (4)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (4)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (4)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (4)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (4)
Michigan State University (4)
Helmholtz Centre for Environmental Research – UFZ, Department of Molecular Environmental Biotechnology, Leipzig, Germany (3)
Laboratoire Maladies Rares: Génétique et Métabolisme- INSERM U1211, 33000 Bordeaux, France (3)
Department of Pediatrics, University of Groningen, University Medical Center Groningen (UMCG), 9713 AV Groningen, The Netherlands (3)
Head of System Biology Lab. at Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Russia (3)
Department of Structural Biology and Developmental Neurobiology, Center for Proteomics and Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (3)
Department of Genome Sciences, University of Washington, Seattle (3)
School of Life Sciences, Queens Medical Centre, University of Nottingham, Nottingham, NG7 2UH (3)
University of Greifswald, Institute for Microbiology, Department for Microbial Proteomics (3)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)
Institute for Molecular Biosciences, The University of Queensland (3)
Department of Biochemistry and Molecular Biology and Infection and Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton 3800, VIC, Australia (3)
IBMC (3)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Greifswald, Germany (3)

Tags

pathogen (35)
pathogen:bacterium (23)
xref:PubMed:39567688 (9)
xref:PubMed:41349542 (6)
xref:PubMed:32349780 (6)
xref:PubMed:39112630 (5)
xref:PubMed:37301912 (5)
xref:PubMed:35103590 (5)
xref:PubMed:27779208 (5)
xref:PubMed:25129481 (5)
xref:PubMed:18677311 (4)
xref:PubMed:19571811 (4)
xref:PubMed:18813210 (4)
xref:PubMed:17728769 (4)
xref:PubMed:19571808 (4)
xref:PubMed:19571809 (4)
xref:PubMed:16400611 (4)
xref:PubMed:18198266 (4)
xref:PubMed:26950932 (4)
xref:PubMed:38471819 (4)
xref:PubMed:35205256 (4)
xref:PubMed:26089375 (4)
xref:PubMed:33763704 (4)
xref:PubMed:25899179 (4)
xref:PubMed:40065170 (4)
xref:PubMed:17411344 (4)
pathogen:fungus (4)
pathogen:virus (4)
pathogen:protozoan (4)
xref:PubMed:27220464 (3)

Keyword

Ascorbic Acid (3)
Colorectal Screening behaviors (1)
Bacterial marker (1)
FIT-DNA (1)
Integrative Medicine (1)
Complementary Medicine (1)
Alternative Medicine Antioxidants (1)
Protective Agents (1)
Physiological Effects of Drugs (1)
Micronutrients (1)
Growth Substances (1)
Antineoplastic Agents, Phytogenic (1)
Radiation-Sensitizing Agents (1)
Topoisomerase I Inhibitors (1)
Topoisomerase Inhibitors (1)
Detection (1)
Body Composition (1)
Digestive System (1)
Microbiome (1)
FIT (1)
Colonic Diseases (1)
Neoplasms by Site (1)
Rectal Diseases (1)
Digestive System Diseases (1)
Gastrointestinal Diseases (1)
Intestinal Diseases (1)
Pharmacologic Actions (1)
Therapeutic Uses (1)
Enzyme Inhibitors (1)
Molecular Mechanisms of Pharmacological Action (1)

IsPrivate

False (62)

Model Flag

Non Kinetic (34)

Submitter Keywords

Not Peer Reviewed (5)
FROG (2)

Classification

bacteria (23)
fungi (4)
viruses (4)
protozoa (4)

Modification

15.994915 (2)
57.021464 (2)
79.966331 (1)
-18.010565 (1)
-17.026549 (1)
58.005479 (1)
N6 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
N6-dimethyl-L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (1843)
RNA-seq of coding RNA (293)
Comparative genomic hybridization by array (173)
Genotyping by array (137)
ChIP-seq (100)
Unknown experiment type (83)
ChIP-chip by tiling array (54)
Other (52)
RNA-seq of non coding RNA (50)
Methylation profiling by array (36)
Transcription profiling by tiling array (33)
ChIP-chip by array (22)
Transcription profiling by RT-PCR (21)
RNA-seq of coding RNA from single cells (21)
Methylation profiling by high throughput sequencing (20)
Transcription profiling by SAGE (10)
DNA-seq (8)
RNA-seq of total RNA (6)
Cell line - High-throughput sequencing (5)
RNAi profiling by array (5)
Differential (4)
Animal - High-throughput sequencing (4)
ATAC-seq (4)
Proteomic profiling by array (4)
ChIP-chip by SNP array (3)
MicroRNA profiling by array (3)
Human - High-throughput sequencing (2)
High-throughput sequencing (2)
Proteomic profiling by mass spectrometer (2)
Genotyping by high throughput sequencing (2)

Release Date

2022 (8306)
2023 (7593)
2021 (7271)
2025 (7070)
2024 (6345)
2020 (5626)
2019 (4325)
2018 (3831)
2017 (3378)
2016 (3020)
2015 (2970)
2014 (2530)
2013 (1959)
2012 (1619)
2011 (1360)
2010 (1309)
2026 (943)
2009 (851)
2008 (713)
2007 (433)
2006 (324)
2005 (265)
2004 (166)
2003 (121)
2002 (120)
2001 (104)
2000 (86)
1999 (85)
1998 (52)
1997 (31)

Location

United States (4)
China (3)
Hong Kong (1)
New Zealand (1)

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The novel protein circPETH-147aa regulates metabolic reprogramming in hepatocellular carcinoma cells to remodel immunosuppressive microenvironment

Metabolic reprogramming fuels cancer cell metastasis and remodels the immunosuppressive tumor microenvironment (TME). We report here that a circRNA, circPETH, packaged by extracellular vesicles (EVs) from tumor-associated macrophages (TAMs) to hepatocellular carcinoma (HCC) cells, facilitates glycol...

2024-12-09 | MTBLS11254 | MetaboLights

Measurement of free amino acid (AA) in response to MYC

Not available

ORGANISM(S): Homo sapiens

ST000249 | MetabolomicsWorkbench

Rahnella sp. AA strain:AA

Rahnella sp. AA strain:AA Genome sequencing and assembly

PRJNA420622 | ENA

metabolome in a group of AA and EA matched pairs of prostate cancer (PCa) and benign adjacent tissues

Not available

ORGANISM(S): Homo sapiens

ST000784 | MetabolomicsWorkbench

Aa achalensis Genome sequencing and assembly

PRJNA472643 | ENA

Aa achalensis

PRJNA1067671 | ENA

Aa calceata

PRJNA1271124 | ENA

Aa leucantha

PRJNA1298745 | ENA

Aa colombiana

PRJNA1273637 | ENA

Aa paleacea

PRJNA1301183 | ENA

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OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

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OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

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