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Unknown
(53)
Transcriptomics
(44)
Genomics
(11)
Proteomics
(9)
Metabolomics
(2)
Organisms
Homo sapiens
(20)
Mus musculus
(15)
Filoviridae
(5)
Streptomyces albus group
(5)
NCBITaxon:186536
(5)
Burkholderia thailandensis E264
(5)
Brucella sp.
(5)
Campylobacter jejuni subsp. jejuni NCTC 11168-BN148
(5)
Skeletonema marinoi
(5)
Neisseria gonorrhoeae FA6140
(5)
Granulicatella adiacens ATCC 49175
(5)
Saccharomycopsis schoenii
(5)
Actinomyces oris
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Porites lobata
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Orthopoxvirus vaccinia
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Mus musculus domesticus
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Sus scrofa
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Mycosarcoma maydis
(1)
Sus scrofa domesticus
(1)
Organisms
Pseudomonas sp. ABC1
(1)
Mycosarcoma maydis
(1)
Arabidopsis thaliana
(1)
Homo sapiens
(1)
Repository
biostudies-arrayexpress
(41)
ENA
(8)
pride
(5)
EGA
(3)
geo
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(1)
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Mass Spectrometry
(5)
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(2)
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(1)
Instrument Platform
Illumina NovaSeq 6000
(7)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB
(5)
NucleoSpin RNA/Protein kit lysis buffer (350 µL per tube; Macherey‑Nagel).
(4)
FastPrep‑24 homogenizer (MP Biomedicals)
(3)
See manuscript
(3)
Liquid Chromatography MS - negative - reverse phase
(2)
Liquid Chromatography MS - positive - reverse phase
(2)
FastPrep‑24 homogenizer (MP Biomedicals), operated at 5 m/s for 10 seconds.
(1)
RapidPURE RNA Plant Kit (MP Biomedicals, Illkirch, France)
(1)
FastPrep-24 homogeniser
(1)
N/a
(1)
NextSeq 500
(1)
Q Exactive HF-X
(1)
Orbitrap Fusion Lumos
(1)
Publication Date
2013
(9)
2026
(6)
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(5)
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(5)
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(3)
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(3)
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(3)
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(3)
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(2)
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(2)
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(2)
2005
(1)
2019
(1)
2021
(1)
Metabolite Name
3beta-3-Hydroxy-11-oxolanosta-8,24-dien-26-al
(2)
Atalantoflavone
(2)
PE(22:2(13Z,16Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))
(2)
PE(24:1(15Z)/22:6(4Z,7Z,10Z,13Z,16Z,19Z))
(2)
(3alphaOH,20S,24S)-3,19:20,24-Diepoxydammarane-3,25-diol
(2)
Rishitinol
(2)
2,3-Undecanedione
(2)
3alpha,7alpha,24(S)-trihydroxy-5beta-cholestan-27-al
(2)
Enol-phenylpyruvate
(2)
6,7-Dihydro-4-(hydroxymethyl)-2-(p-hydroxyphenethyl)-7-methyl-5H-2-pyrindinium
(2)
5-Nonadecyl-1,3-benzenediol
(2)
5b-Cholestane-3a,7a,12a,23-Tetrol
(2)
5-Heptadecyl-1,3-benzenediol
(2)
3,11,12-Trihydroxy-1(10)-spirovetiven-2-one
(2)
5-(10,13-Nonadecadienyl)-1,3-benzenediol
(2)
Camelledionol
(2)
Chavicol
(2)
19-Noretiocholanolone
(2)
(3-Methyl-2-butenyl)-benzene
(2)
PC(18:3(6Z,9Z,12Z)/20:4(8Z,11Z,14Z,17Z))
(2)
PE(20:3(8Z,11Z,14Z)/14:0)
(2)
Prehnitene
(2)
(3beta,5alpha,6beta,22E,24R)-23-Methylergosta-7,22-diene-3,5,6-triol
(2)
L-Urobilinogen
(2)
(9S,10S)-9,10-dihydroxyoctadecanoate
(2)
(3beta,5alpha,6beta,7alpha,22E,24R)-Ergosta-8,22-diene-3,5,6,7-tetrol
(2)
6,10,14-Trimethyl-5,9,13-pentadecatrien-2-one
(2)
Bexarotene
(2)
Lycopersiconolide
(2)
Alantolactone
(2)
First Public Date
2020
(3)
2025
(2)
2026
(1)
2024
(1)
2021
(1)
Study type
Transcription profiling by array
(32)
RNA-seq of coding RNA
(8)
Bisulfite-seq
(1)
Release Date
2013
(12)
2022
(7)
2014
(7)
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(6)
2011
(6)
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2016
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2019
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2017
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2003
(1)
2001
(1)
2000
(1)
1999
(1)
Lab affiliation
Department of Biochemistry & Molecular Biology, Michigan State Univeristy
(1)
Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, New York, United States
(1)
Michigan State University, Department of Biochemistry & Molecular Biology
(1)
Michigan State University, Biochemical & Molecular Biology Department and Plant Resilience Institute
(1)
Principal Investigator
(1)
Tags
xref:PubMed:41152436
(1)
xref:PubMed:39487654
(1)
xref:PubMed:33219226
(1)
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Pseudomonas sp. ABC1 isolate:ABC1
Pseudomonas sp. ABC1 isolate:ABC1 Genome sequencing
PRJNA641577
|
ENA
Cite
Pseudomonas sp. ABC1 pellicle
PRJNA1514212
|
ENA
Cite
The Tangier disease gene product ABC1 controls the cellular apolipoprotein-mediated lipid removal pathway.
Not available
S-EPMC481052
|
biostudies-literature
Cite
Phylogenetic, expression, and bioinformatic analysis of the ABC1 gene family in Populus trichocarpa.
Not available
S-EPMC3791817
|
biostudies-literature
Cite
Complete Genome Sequence of Pseudomonas chilensis Strain ABC1, Isolated from Soil.
Not available
S-EPMC7516146
|
biostudies-literature
Cite
Arabidopsis Plastoglobule Proteome with ABC1 atypical kinase mutants
Quantitative proteomics were performed on tryptic digests of proteins purified from the thylakoid and plastoglobules of Arabidopsis thaliana. Wild type was compared to null mutants of ABC1 atypical kinases, specifically abc1k1, abc1k3, and abc1k6.
ORGANISM(S):
Arabidopsis thaliana (Mouse-ear cress)
2020-02-06
|
PXD017380
|
Pride
Plastoglobule
Arabidopsis
Thylakoid
Proteome
Cite
PDR Transporter
ABC1
Is Involved in the Innate Azole Resistance of the Human Fungal Pathogen
Fusarium keratoplasticum
.
Not available
S-EPMC8211738
|
biostudies-literature
Cite
An unusual overrepresentation of genetic factors related to iron homeostasis in the genome of the fluorescent Pseudomonas sp. ABC1.
Not available
S-EPMC8085936
|
biostudies-literature
Cite
TaAbc1, a member of Abc1-like family involved in hypersensitive response against the stripe rust fungal pathogen in wheat.
Not available
S-EPMC3602590
|
biostudies-literature
Cite
Whole genome sequencing of TRI4-6-5 and ABC1 mutants of Fusarium graminearum
PRJNA605650
|
ENA
Cite
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