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TranscriptomicsStreptococcus mutans UA159 vs. spx mutant strains
Transcriptional profiling to investigate the regulatory roles of SpxA and SpxB of S. mutans. RNA was extracted from four replicate samples of each strain of interest (spxA mutant, spxB mutant, spxAB double-mutant, UA159 wild type) and labeled with Cy3. For each replicate, labeled RNA was hybridized...
ORGANISM(S): Streptococcus mutans 
2010-05-16 | E-GEOD-19656 | biostudies-arrayexpress
TranscriptomicsEnterococcus faecalis OG1RF vs. Δrel mutants under control or mupirocin-treated conditions
Transcriptional profiling to define the stringent response regulon and significance of basal (p)ppGpp levels in E. faecalis OG1RF. RNA was extracted from four replicate samples of each strain of interest and labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-la...
ORGANISM(S): Enterococcus faecalis OG1RF 
2011-12-20 | E-GEOD-34561 | biostudies-arrayexpress
TranscriptomicsStreptococcus mutans UA159 vs. clp mutant strains
Transcriptional profiling to investigate the roles of ClpP and ClpX of S. mutans RNA was extracted from four replicate samples of each strain of interest and labeled with Cy3. For each replicate, labeled RNA was hybridized to slides along with Cy5-labeled reference RNA, extracted from S. mutans UA15...
ORGANISM(S): Streptococcus mutans 
2011-06-10 | E-GEOD-29871 | biostudies-arrayexpress
TranscriptomicsStreptococcus mutans UA159 vs. fabM mutant strain (UR117), pH7 vs. pH5/5.5
Transcriptional analysis of glucose shock vs. steady-state growth in the parent strain and an acid sensitive mutant strain of S. mutans RNA was extracted from 4 replicate samples of S. mutans UA159 and UR117 (fabM mutant strain) grown in continuous culture to a steady-state pH value of 7. The cultu...
ORGANISM(S): Streptococcus mutans UA159 
2015-02-15 | E-GEOD-64236 | biostudies-arrayexpress
TranscriptomicsEnterococcus faecalis OG1RF control vs. treatment with vancomycin
Transcriptional profiling to investigate the effect of drug treatment on the E. faecalis cells. For microarray analysis, E. faecalis OG1RF was grown in FMC medium supplemented with 10 mM glucose to an optical density at 600 nm (OD600) of 0.3 and the cultures were divided in 3 aliquots. One aliquot...
ORGANISM(S): Enterococcus faecalis OG1RF 
2013-03-19 | E-GEOD-45300 | biostudies-arrayexpress
TranscriptomicsEnterococcus faecalis OG1RF control vs. treatment with ampicillin, bacitracin, or cephalothin
Transcriptional profiling to investigate the effect of drug treatment on the E. faecalis cells. For microarray analysis, E. faecalis OG1RF was grown in FMC medium supplemented with 10 mM glucose to an optical density at 600 nm (OD600) of 0.3 and the cultures were divided in 7 aliquots. One aliquot w...
ORGANISM(S): Enterococcus faecalis OG1RF 
2013-03-16 | E-GEOD-45231 | biostudies-arrayexpress
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