Acs - OmicsDI

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Unknown (44669)
Transcriptomics (3295)
Genomics (554)
Proteomics (358)
Metabolomics (35)
Models (18)
Genomic (5)
Other (4)
Clinical (3)
Methylation profiling (2)
Multiomics (1)

Organisms

Mus musculus (1980)
Homo sapiens (1221)
Drosophila melanogaster (75)
Danio rerio (60)
Arabidopsis thaliana (55)
Caenorhabditis elegans (55)
Rattus norvegicus (40)
Saccharomyces cerevisiae (26)
Schmidtea mediterranea (11)
Bos taurus (11)
Gallus gallus (10)
Escherichia coli str. K-12 substr. MG1655 (7)
Escherichia coli K-12 (6)
Sus scrofa (6)
Dictyostelium discoideum (5)
Canis lupus familiaris (5)
Macaca mulatta (5)
Oryctolagus cuniculus (5)
Ovis aries (5)
Xenopus laevis (5)
Macaca fascicularis (4)
Ciona intestinalis (3)
mixed sample (3)
Heterocephalus glaber (3)
Methanothermobacter thermautotrophicus (1)
Methanothermobacter marburgensis str. Marburg (1)
Methanothermobacter thermautotrophicus str. Delta H (1)
Nitrosomonas europaea (1)
Staphylococcus epidermidis ATCC 12228 (1)
Eukaryota (1)

Organisms

Homo sapiens (58)
Mus musculus (11)
Caenorhabditis elegans (8)
Rattus norvegicus (5)
Saccharomyces cerevisiae (5)
Cavia porcellus (2)
Xenopus laevis (2)
Equus caballus (2)
Danio rerio (2)
Veillonella atypica ACS-134-V-Col7a (1)
Bifidobacterium breve ACS-071-V-Sch8b (1)
Veillonella atypica ACS-049-V-Sch6 (1)
Aerococcus sp. Group 1 (1)
Staphylococcus simulans ACS-120-V-Sch1 (1)
Campylobacter ureolyticus ACS-301-V-Sch3b (1)
Staphylococcus lugdunensis ACS-027-V-Sch2 (1)
Propionimicrobium lymphophilum ACS-093-V-SCH5 (1)
Lactobacillus iners ACS-070-V-Col3 (1)
Veillonella seminalis ACS-216-V-Col6b (1)
Facklamia hominis ACS-120-V-Sch10 (1)
Campylobacter ureolyticus ACS-172-V-Col6 (1)
Cutibacterium acnes ACS-068-V-Col6 (1)
Schaalia turicensis ACS-279-V-Col4 (1)
Gleimia europaea ACS-120-V-Col10b (1)
Actinobaculum massiliense ACS-171-V-Col2 (1)
Anaerococcus hydrogenalis ACS-025-V-Sch4 (1)
Anaerococcus prevotii ACS-065-V-Col13 (1)
Ligilactobacillus salivarius ACS-116-V-Col5a (1)
Veillonella parvula ACS-068-V-Sch12 (1)
Finegoldia magna ACS-171-V-Col3 (1)

Repository

biostudies-arrayexpress (3481)
pride (296)
ENA (183)
EGA (109)
geo (82)
MassIVE (38)
MetaboLights (33)
BioModels (18)
iProX (10)
jPOST (10)
dbGaP (5)
PanoramaPublic (4)
GNPS (2)
GPMDB (2)
ExpressionAtlas (1)
PAXDB (1)

Tissue

Cell culture (71)
Epithelial cell (20)
Brain (17)
Blood plasma (13)
Permanent cell line cell (13)
Kidney (10)
Early embryonic cell (7)
Heart (7)
Liver (7)
Blood (6)
Cell suspension culture (6)
Blood serum (5)
Embryonic stem cell (4)
Lung (4)
Whole body (4)
B cell (3)
Blood cell (3)
Colon (3)
HeLa cell (3)
Macrophage (3)
Muscle tissue (3)
Stem cell (3)
T cell (3)
Type II pneumocyte (3)
Erythrocyte (2)
Fibroblast (2)
Gastric epithelium (2)
Hepatocyte (2)
Kidney cell (2)
Leaf (2)

Disease

Normal (7)
Breast cancer (7)
Disease free (6)
Mixed disorder as reaction to stress (6)
Chronic myeloid leukemia (3)
COVID-19 (3)
Rheumatoid arthritis (2)
Not Available (2)
CLL (1)
Injured (1)
Ewing family tumor (1)
Alopecia (1)
Autoimmune disorder (1)
Not applicable (1)
Pre-tumoral lesion in a mouse model of human adamantinomatous craniopharyngioma (ACP) (1)
Acute Lymphoblastic Leukaemia (1)
Apert syndrome (1)
Infected (1)
Chronic granulomatous disease (1)
IRAK-4 Q293X mutation (1)
WT (1)
Adenoid cystic carcinoma (1)
S enteritidis (1)
No disease (1)
Adenocarcinoma (1)
Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Colorectal cancer (1)
Rectal Neoplasms (1)
Colorectal Neoplasms (1)

Technology Type

Mass Spectrometry (296)
Shotgun proteomics (180)
Bottom-up proteomics (48)
Affinity purification coupled with mass spectrometry proteomics (40)
Data-dependent acquisition (28)
Mass spectrometry (23)
Gel-based experiment (11)
SWATH MS (10)
Top-down proteomics (10)
Chemical cross-linking coupled with mass spectrometry proteomics (9)
Data-independent acquisition (9)
HDMSE (6)
NMR spectroscopy (5)
Mass spectrometry assay (4)
SRM/MRM (4)
All-ion fragmentation (3)
Illumina HiSeq 4000, ILLUMINA (2)
Affinity proteomics (2)
Illumina HiSeq 2500, ILLUMINA (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
NMR spectroscopy assay (1)

Instrument Platform

Illumina NovaSeq 6000 (270)
NextSeq 500 (188)
Illumina HiSeq 2500 (131)
Illumina HiSeq 4000 (105)
Illumina HiSeq 2000 (66)
NextSeq 550 (39)
NextSeq 2000 (33)
Illumina MiSeq (13)
Illumina HiSeq 3000 (12)
Illumina NovaSeq X (10)
DNBSEQ-G400 (9)
Illumina HiSeq 1500 (9)
Illumina Genome Analyzer IIx (7)
Illumina Genome Analyzer II (6)
NA (6)
Racham server on Uppmax, NAISS (4)
FACS Aria-III (4)
10x Genomics Chromium Controller (4)
HPC cluster Lobo (3)
10x Chromium Controller (3)
10x Genomics Chromium (3)
Sony SH800 (3)
BD FACSARIA II (3)
Flow Cytometer (3)
FACS Aria (3)
BGISEQ-500 (3)
BD Influx sorter (2)
Agilent Bravo NGS workstation, Microlab STAR automated liquid handler (Hamilton Robotics), PCR machine (MJ Research Peltier Thermal Cycler) (2)
Single nuclei were captured using the 10x Genomics Chromium Controller. (2)
Thermomixer (2)

Publication Date

2014 (427)
2013 (400)
2015 (396)
2012 (306)
2016 (282)
2010 (241)
2011 (237)
2025 (185)
2022 (178)
2023 (174)
2021 (172)
2020 (152)
2024 (142)
2008 (135)
2026 (113)
2009 (103)
2018 (100)
2019 (83)
2017 (73)
2007 (41)
2006 (15)
2005 (11)
2004 (3)

UNIPROT ID/AC

A0A1S3MBI7 (1)
A0A1S3RDV7 (1)
A0A1S3SLA8 (1)
B5X3P0 (1)
A0A1S3N3T3 (1)
A0A1S3NZZ4 (1)
A0A1S3P094 (1)
A0A1S3PY93 (1)
Q19VI0 (1)
A0A1S3M1N8 (1)
A0A1S3NHN0 (1)
A0A1S3KZD6 (1)
A0A1S3SD21 (1)
A0A1S3LDQ3 (1)
A0A1S3P3J9 (1)
A0A1S3LD76 (1)
A0A1S3LEH9 (1)
A0A1S3MF70 (1)
A0A1S3MF67 (1)
A0A1S3MEX0 (1)
A0A1S3MEU5 (1)
A0A1S3RYH9 (1)
A0A1S3RYI5 (1)
A0A1S3P4C7 (1)
A0A1S3P297 (1)
A0A1S3P8N0 (1)
A0A1S3PB08 (1)
A0A1S3N1B9 (1)
C0HBN7 (1)
A0A1S3LIF1 (1)

CHEBI ID

CHEBI:15428 (21)
CHEBI:17256 (15)
CHEBI:16958 (14)
CHEBI:15033 (13)
CHEBI:57692 (12)
CHEBI:57451 (12)
CHEBI:57328 (12)
CHEBI:57597 (12)
CHEBI:58228 (12)
CHEBI:58115 (12)
CHEBI:58069 (12)
CHEBI:58245 (12)
CHEBI:57286 (12)
CHEBI:59458 (12)
CHEBI:57673 (12)
CHEBI:58017 (12)
CHEBI:58210 (12)
CHEBI:18110 (12)
CHEBI:57642 (12)
CHEBI:18191 (12)
CHEBI:29103 (12)
CHEBI:57288 (12)
CHEBI:16810 (12)
CHEBI:16240 (12)
CHEBI:16452 (12)
CHEBI:15698 (12)
CHEBI:15377 (12)
CHEBI:17865 (12)
CHEBI:30089 (12)
CHEBI:14314 (12)

Metabolite Name

Valine (7)
Leucine (7)
Ornithine (7)
Tyrosine (6)
Taurine (5)
Glutamate (5)
Phenylalanine (5)
Methionine (5)
Creatinine (5)
Alanine (5)
Lactate (5)
Isoleucine (5)
Glycine (5)
Fumaric acid (5)
Stearic acid (5)
Adenosine (5)
Palmitic acid (5)
Xanthine (5)
Leucine (4)
Arginine (4)
AMP (4)
Histidine (4)
Formate (4)
Choline (4)
Creatine (4)
Citrate (4)
Acetate (4)
Thymine (4)
Glutathione (4)
Putrescine (4)

First Public Date

2013 (28)
2014 (26)
2025 (24)
2026 (23)
2023 (23)
2024 (15)
2022 (10)
2020 (9)
2021 (7)
2019 (6)
2017 (5)
2018 (3)
2015 (3)
2016 (1)

Modelling Approach

Constraint-based model (13)
Ordinary differential equation model (2)
Metabolic network (1)

Study status

Completed (3)

Lab affiliation

Drug Discovery Unit Wellcome Centre for Anti-Infectives Research Division of Biological Chemistry and Drug Discovery University of Dundee Dundee, DD1 5EH. UK (5)
Cellzome (3)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (3)
Fourth Hospital of Hebei Medical University (3)
IRCCS Istituto G Gaslini (3)
Institute of Pharmaceutical Chemistry, Goethe University, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany Structural Genomics Consortium (SGC), Buchmann Institute for Life Sciences, Max-von-Laue-Str. 15, 60438 Frankfurt am Main, Germany German Cancer Consortium (DKTK) Mainz/Frankfurt, German Cancer Research Center (DKFZ), 69120 Heidelberg, Germany (3)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (2)
Chemistry Department, Wayne State University, US (2)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
Department of Biosciences and Bioengineering, IIT Bombay, Mumbai 400076, India (2)
Drug Discovery Moffitt Cancer Center Tampa, FL, USA (2)
Laboratory of Biomolecular Research, Division of Biology and Chemistry, Paul Scherrer Institute, Villigen, Switzerland; Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Switzerland (2)
Molecular Medicine, Huang Lab, Scripps Research, United States (2)
Pacific Northwest National Laboratory, USA (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
Research Analytical Biochemistry Lab (RABL), Toronto Metropolitan University, Canada (2)
State Key Laboratory of Coordination Chemistry, School of Chemistry and Chemical Engineering, Chemistry and Biomedicine Innovation Center (ChemBIC), Nanjing University, Nanjing, China. (2)
Systems Biology Ireland, University College Dublin (2)
University of Texas at Austin Molecular Biosciences (2)
Wayne State University Chemistry (2)
Whitehead Institute for Biomedical Research and Department of Biology, Massachusetts Institute of Biology, Cambridge, MA, USA (2)
"Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany" (1)
1 Medical Research Council (MRC) Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee (1)
1-University of Lille, CNRS, UAR 3290, MSAP, Miniaturisation pour la Synthèse l'Analyse et la Protéomique, F-59650 Villeneuve d’Ascq, France 2-Shrieking sixties, 1-3 Allée Lavoisier, F-59650 Villeneuve d'Ascq, France. (1)
1. Department of Biochemistry and Molecular Biology, University of Arkansas for Medical Sciences, Little Rock, AR 2. Arkansas Children's Research Institute (1)
1.Department of Biochemistry, Faculty of Science, Kasetsart University, 50 Ngam Wong Wan Road, Chatuchak, Bangkok 10900, Thailand 2.Center for Advanced Studies in Nanotechnology for Chemical, Food and Agricultural Industries, KU Institute for Advanced Studies, Kasetsart University, Bangkok, 10900, Thailand (1)
1School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore, 637551, Singapore (1)
Aalto University, Espoo, Finland (1)
Aarhus University Department of Biomedicine DK-8000C Aarhus Denmark (1)

Keyword

Surgical complications (1)
Colon cancer screening (1)
Rectal (1)
Colorectal cancer screening (1)
Colorectal (1)
Colonoscopy (1)
Rectal Cancer (1)

IsPrivate

False (18)

Model Flag

Non Kinetic (1)

Submitter Keywords

FROG (7)
Not Peer Reviewed (2)

Classification

bacteria (4)
fungi (1)

Modification

Not available (1)

Study type

Transcription profiling by array (1775)
RNA-seq of coding RNA (666)
RNA-seq of coding RNA from single cells (338)
ChIP-seq (173)
Other (53)
Methylation profiling by high throughput sequencing (43)
Transcription profiling by tiling array (39)
Comparative genomic hybridization by array (36)
Methylation profiling by array (35)
Animal - High-throughput sequencing (33)
RNA-seq of non coding RNA (32)
DNA-seq (29)
ATAC-seq (27)
RNA-seq of total RNA (21)
Human - High-throughput sequencing (17)
Unknown experiment type (15)
Animal - Single-cell sequencing (15)
Single nucleus RNA sequencing (13)
Cell line - High-throughput sequencing (12)
Baseline (11)
ChIP-chip by tiling array (11)
Transcription profiling by RT-PCR (11)
Human - Single-cell sequencing (8)
Differential (7)
High-throughput sequencing (6)
MicroRNA profiling by high throughput sequencing (6)
MicroRNA profiling by array (5)
Cell line - Single-cell sequencing (4)
ChIP-chip by array (4)
Bisulfite-seq (4)

Release Date

2025 (6488)
2022 (5831)
2023 (5804)
2024 (5651)
2021 (4260)
2020 (4066)
2019 (2906)
2018 (2685)
2017 (2073)
2016 (1377)
2015 (1216)
2026 (1171)
2014 (1131)
2013 (989)
2012 (839)
2011 (616)
2010 (523)
2009 (206)
2008 (191)
2007 (62)
2006 (27)
2005 (14)
2004 (10)
2002 (4)
2003 (3)
2000 (3)
2001 (1)
1998 (1)
1997 (1)

Location

United States (1)
Japan (1)

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Expression analysis of C. elegans eat-2 acs-20 and ptr-8 eat-2 acs-20 mutants

PRJNA931231 | ENA

Proteomic analysis of vesicles derived from ACS patients

Biomarker discovery for coronary artery disease using circulating extracellular vesicles derived from plasma samples of ACS patients.

ORGANISM(S): Homo sapiens (Human)

2025-09-24 | PXD059929 | Pride

Expression analysis of C. elegans wild-type N2, eat-2, acs-20 and eat-2 acs-20 mutants

PRJNA517342 | ENA

Different gene expression profile in acute coronary sindrome (ACS) patients compared to stable angina(SA) patients.

We have employed whole genome microarray expression profiling as a discovery platform to identify genes involved in plaque rupture. Human coronary artery endothelial cells (ECs) were stimulated in vitro for 12 hours with plasma obtained from the coronary sinus (CS) and the aorta (Ao) of patients wit...

ORGANISM(S): Homo sapiens

2014-02-14 | E-GEOD-54977 | biostudies-arrayexpress

Expression analysis of C. elegans eat-2, eat-2 acs-22 and eat-2 pmk-1 acs-22 mutants

PRJNA517341 | ENA

Microarray expression profiling of C. elegans N2 L4 control (RNAi) vs. nhr-25 (RNAi) and N2 (Wt) vs. acs-3 (ft5) mutants

Acyl-coA synthases (ACSs) produce fatty acyl-CoAs that are used in metabolic and signaling pathways. Metazoans have a large number of ACS genes with differing expression patterns and substrate preferences, but the physiological roles of most ACS genes are unknown. Here, we focused on the C. elegans ...

ORGANISM(S): Caenorhabditis elegans

2014-03-21 | E-GEOD-48605 | biostudies-arrayexpress

Expression analysis of C. elegans eat-2; acs-20 and ptr-8 eat-2; acs-20 mutants

Investigation of whole genome gene expression level changes in C. elegans ptr-8 eat-2; acs-20 compared to the eat-2; acs-20 mutant. This project contains 6 samples (3 from eat-2; acs-20, 3 from ptr-8 eat-2; acs-20) of RNA-seq data.

ORGANISM(S): Caenorhabditis elegans

2023-02-11 | GSE224429 | GEO

A combinatorial Interplay Among the ACC Synthase Isoforms Regulates Ethylene Biosynthesis in Arabidopsis thaliana

ACC Synthase (ACS) is the key regulatory enzyme in the ethylene biosynthesis in plants. It catalyzes the conversion of s-adenosylmethionine (SAM) to 1-aminocyclopropane-1-carboxylic acid (ACC), the precursor of ethylene. Arabidopsis has nine ACS genes. The goal of the project is to inactivate each g...

ORGANISM(S): Arabidopsis thaliana

2009-12-15 | E-GEOD-14496 | biostudies-arrayexpress

Expression analysis of C. elegans wild-type N2, eat-2, acs-20 and eat-2; acs-20 mutants

Investigation of whole genome gene expression level changes in C. elegans eat-2, acs-20 and eat-2; acs-20 mutant compared to the wild-type N2 strain.

ORGANISM(S): Caenorhabditis elegans

2020-01-31 | GSE125718 | GEO

Expression analysis of C. elegans eat-2, eat-2; acs-22 and eat-2; pmk-1; acs-22 mutants

Investigation of whole genome gene expression level changes in C. elegans eat-2; acs-22 and eat-2; pmk-1; acs-22 mutant compared to the eat-2 strain.

ORGANISM(S): Caenorhabditis elegans

2019-07-31 | GSE125716 | GEO

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