Activated sludge - OmicsDI

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Genomics (2581)
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Organisms

activated sludge metagenome (12)
Alphavirus (10)
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Nitrosomonas europaea ATCC 19718 (6)
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mixed sample (2)
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bioreactor metagenome (1)
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unidentified wastewater sludge bacterial sample S1 (1)
Proteus phage Privateer (1)

Organisms

activated sludge metagenome (1053)
sludge metagenome (93)
wastewater metagenome (72)
bioreactor metagenome (27)
bioreactor sludge metagenome (15)
anaerobic digester metagenome (13)
Bacteria (11)
soil metagenome (8)
biofilm metagenome (7)
Nitrosomonas europaea ATCC 19718 (4)
terrestrial metagenome (3)
uncultured bacterium (3)
Pseudomonas aeruginosa (3)
metagenome (3)
Nitrospira defluvii (2)
Corallococcus (2)
Pseudomonas sp. DCA-1 (2)
Comamonas thiooxydans (2)
uncultured prokaryote (2)
Meyerozyma guilliermondii (2)
fermentation metagenome (2)
Serratia marcescens (2)
Homo sapiens (2)
Paracoccus sp. TRP (1)
Thauera sp. AutoDN2 (1)
Candidatus Neomicrothrix parvicella Bio17-1 (1)
Comamonas testosteroni KF-1 (1)
Sphaerotilus natans subsp. natans DSM 6575 (1)
tris(2-butoxyethyl) phosphate-degrading culture (1)
Flavobacterium odoriferum (1)

Repository

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pride (10)
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Disease

Hepatocellular carcinoma (1)

Technology Type

Mass Spectrometry (10)
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SWATH MS (1)

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Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
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CHEBI ID

CHEBI:69081 (2)
CHEBI:28842 (2)
CHEBI:15741 (2)
CHEBI:15756 (2)
CHEBI:20067 (2)
CHEBI:48042 (1)
CHEBI:34024 (1)
CHEBI:28131 (1)
CHEBI:82845 (1)
CHEBI:80475 (1)
CHEBI:51460 (1)
CHEBI:146192 (1)
CHEBI:20582 (1)
CHEBI:78410 (1)
CHEBI:170060 (1)
CHEBI:17631 (1)
CHEBI:31968 (1)
CHEBI:18106 (1)
CHEBI:132549 (1)
CHEBI:29216 (1)
CHEBI:191103 (1)
CHEBI:41378 (1)
CHEBI:10216 (1)
CHEBI:79068 (1)
CHEBI:50262 (1)
CHEBI:167535 (1)
CHEBI:181614 (1)
CHEBI:48635 (1)
CHEBI:25461 (1)
CHEBI:27375 (1)

Metabolite Name

Inosine (3)
Nonacosanoylcarnitine (2)
Phosphoramidon (2)
Vignatic acid B (2)
4-(2-((7-Amino-2-(furan-2-yl)-[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino)ethyl)phenol (2)
Asn-Arg-Ala-Ile (2)
Tripdiolide (2)
Ergocristine (2)
N-Methoxysuccinyl-Ala-Ala-Pro-Val (2)
1-Ethoxymethyl-5-fluorouracil (2)
2-[1-[2-[(4-Carbamimidoylbenzoyl)amino]-3-(4-hydroxyphenyl)propanoyl]piperidin-4-yl]oxyacetic acid (2)
Dhesn (2)
Vignatic acid A (2)
Gly-Pro-Gly-Arg-Ala-Phe (2)
Xenognosin A (2)
Methyl (2S)-2-[[4-[[(2R)-2-amino-3-sulfanylpropyl]amino]-2-phenylbenzoyl]amino]-4-methylsulfanylbutanoate (2)
Glycyl-prolyl-glutamic acid (2)
Lys-Cys-Thr-Cys-Cys-Ala (2)
Borapetoside (2)
[[(3R,4R,5S,6R)-3-Acetamido-4,5-dihydroxy-6-(hydroxymethyl)oxan-2-yl]amino] N-phenylcarbamate (2)
Mometasone (2)
Rosavin (2)
Argatroban (2)
(3b,20R,22R)-3,20,27-Trihydroxy-1-oxowitha-5,24-dienolide 3-glucoside (2)
Eriojaposide B (2)
Cinncassiol D1 glucoside (2)
Nizatidine (2)
Glutaminyltyrosine (2)
Mimosine (2)
Fusarin C (2)

First Public Date

2017 (289)
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2019 (251)
2023 (239)
2018 (219)
2025 (213)
2026 (211)
2020 (169)
2022 (166)
2016 (161)
2021 (154)
2014 (95)
2015 (68)
2013 (64)

Classification

bacteria (20)
viruses (3)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (3)
Genotyping by array (2)
Other (2)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Comparative genomic hybridization by array (1)
ChIP-seq (1)

Release Date

2022 (90)
2019 (75)
2021 (71)
2024 (68)
2020 (66)
2025 (63)
2023 (60)
2015 (48)
2017 (47)
2016 (43)
2018 (34)
2014 (32)
2013 (29)
2012 (23)
2011 (16)
2009 (9)
2006 (9)
2010 (8)
2008 (7)
2026 (7)
2003 (6)
2002 (6)
2000 (6)
2007 (5)
2005 (5)
1998 (5)
2004 (4)
2001 (3)
1999 (3)

Lab affiliation

Advanced Water Management Centre, University of Queensland. (1)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (1)
Biogroup - Group of Environmental Biotechnology Department of Chemical Engineering . Universidade de Santiago de Compostela (1)
Department of Biotechnology, Delft University of Technology, The Netherlands. (1)
Department of Biotechnology, TU Delft, The Netherlands (1)
Dr. rer. nat. Dirk Benndorf, Bioprocess Engineering, Otto von Guericke University Magdeburg, Universitätsplatz 2, D-39106 Magdeburg, Germany (1)
Eco-Systems Biology group, Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Luxembourg (1)
Environmental biotechnology (1)
Head of Center for Microbial Communities Department of Biotechnology, Chemistry and Environmental Engineering Aalborg University | Sohngaardsholmsvej 49 | 9000 Aalborg | Denmark (1)
Institute for Genetics, Cologne Excellence Cluster on Cellular Stress Responses in Aging-Associated Diseases (CECAD), 50931 Cologne, Germany (1)

Tags

xref:PubMed:29069476 (77)
wastewater (72)
pathogen (23)
pathogen:bacterium (20)
xref:PubMed:28546481 (8)
xref:PubMed:25727998 (4)
xref:PubMed:41135395 (3)
xref:PubMed:21115076 (3)
pathogen:virus (3)
xref:PubMed:26182345 (2)
xref:PubMed:39854777 (2)
xref:PubMed:40170341 (2)
xref:PubMed:28386012 (2)
xref:PubMed:35894622 (2)
xref:PubMed:35439558 (1)
xref:PubMed:34227830 (1)
xref:PubMed:36040144 (1)
xref:PubMed:20154108 (1)
xref:PubMed:26120139 (1)
xref:PubMed:39209232 (1)
xref:PubMed:33819658 (1)
xref:PubMed:26743465 (1)
xref:PubMed:38289113 (1)
xref:PubMed:41185132 (1)
xref:PubMed:26262816 (1)
xref:PubMed:28570873 (1)
xref:PubMed:24355504 (1)
xref:PubMed:30476038 (1)
xref:PubMed:12420164 (1)
xref:PubMed:30046858 (1)

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Metaproteomics: Optimization and evaluation of protein extraction from activated sludge

Metaproteomic studies of full-scale activated sludge systems require reproducible protein extraction methods. A systematic evaluation of three different extractions protocols, each in combination with three different methods of cell lysis, and a commercial kit were evaluated. Criteria used for comp...

ORGANISM(S): environmental samples

2014-08-15 | PXD000862 | Pride

Sewage Denitrification Activated sludge Nitrification Wastewater

Using Proteomics for an Insight into the Performance of Activated Sludge

The performance of a lab-scale wastewater treatment plant during the start-up phase was investigated. A period of varying pH resulted in the loss of ammonium removal efficiency together with a decrease in the specific autotrophic oxygen uptake rate (OUR). From the OUR, it was inferred that the ammon...

ORGANISM(S): bioreactor sludge metagenome

2020-05-18 | PXD014156 | Pride

Proteomics Nitrification Label-free quantification Respirometry Activated sludge

Activated sludge

Activated sludge Metagenome-Lyj

PRJNA1241427 | ENA

activated sludge metagenome

Activated sludge Metagenome

PRJNA264454 | ENA

Activated sludge

Activated sludge Raw sequence reads

PRJNA967183 | ENA

activated sludge

activated sludge Raw sequence reads

PRJNA540397 | ENA

activated sludge metagenome

activated sludge Metagenome

PRJNA391055 | ENA

activated sludge metagenome

activated sludge sample

PRJNA383752 | ENA

activated sludge

activated sludge Raw sequence reads

PRJNA949407 | ENA

activated sludge metagenome

activated sludge metagenome

PRJNA233634 | ENA

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