Activity based protein profiling

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Transcriptomics (7972)
Unknown (1155)
Proteomics (903)
Genomics (648)
Metabolomics (407)
Other (14)
Methylation profiling (12)
Multiomics (7)
Models (2)

Organisms

Homo sapiens (3794)
Mus musculus (1924)
Rattus norvegicus (277)
Arabidopsis thaliana (276)
Drosophila melanogaster (162)
Saccharomyces cerevisiae (134)
Danio rerio (112)
Caenorhabditis elegans (88)
Sus scrofa (71)
Escherichia coli (70)
Bos taurus (55)
Gallus gallus (51)
Oryza sativa (50)
Zea mays (47)
Hordeum vulgare (32)
Oryza sativa Japonica Group (30)
Candida albicans (27)
Triticum aestivum (24)
Solanum tuberosum (21)
Escherichia coli str. K-12 substr. MG1655 (21)
Staphylococcus aureus (21)
Ovis aries (19)
Schizosaccharomyces pombe (18)
Daphnia magna (17)
Xenopus laevis (17)
Oncorhynchus mykiss (16)
Canis lupus familiaris (16)
Medicago truncatula (15)
Vitis vinifera (15)
Anopheles gambiae (15)

Organisms

Homo sapiens (140)
Mus musculus (56)
Rattus norvegicus (5)
Arabidopsis thaliana (4)
Drosophila melanogaster (3)
Caenorhabditis elegans (2)
Escherichia coli (2)
Saccharomyces cerevisiae (2)
Solenopsis japonica (1)
Staphylococcus aureus subsp. aureus str. Newman (1)
Picea glauca (1)
Apis mellifera carnica (1)
Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
Culex pipiens pallens (1)
Trichophyton rubrum (1)
Staphylococcus epidermidis RP62A (1)
Solenopsis invicta (1)
Burkholderia cepacia (1)
Cyanobacteriota (1)
Hordeum vulgare (1)
Nannochloropsis oceanica (1)
Aspergillus fumigatus (1)
Salmonella enterica subsp. enterica serovar Typhimurium (1)
Candidozyma auris (1)
Verticillium dahliae (1)
Apis mellifera (1)
Arabidopsis (1)
Beta vulgaris (1)
Salmo salar (1)
hot springs metagenome (1)

Repository

biostudies-arrayexpress (8216)
pride (556)
MetaboLights (396)
ENA (275)
MassIVE (154)
geo (142)
EGA (79)
iProX (65)
PAXDB (52)
jPOST (32)
MetabolomicsWorkbench (9)
PanoramaPublic (9)
GPMDB (5)
PeptideAtlas (3)
GNPS (2)
Cell Collective (1)
FAIRDOMHub (1)

Tissue

Cell culture (131)
Epithelial cell (49)
Brain (29)
Colon (25)
Lung (20)
HCT-116 cell (19)
Liver (19)
Permanent cell line cell (18)
Fibroblast (15)
Kidney (13)
Blood (11)
Leaf (11)
B cell (10)
Heart (10)
Melanocyte (10)
T cell (10)
Cultured cells (9)
Cell suspension culture (9)
Macrophage (8)
Primary cell (8)
Skin (8)
Blood plasma (7)
Kidney cell (7)
Blood cell (6)
Plant cell (6)
Stem cell (6)
Dendritic cell (5)
HeLa cell (5)
Hepatocyte (5)
Others (1)

Disease

Normal (76)
Breast cancer (24)
Melanoma (10)
Glioblastoma (8)
Neuroblastoma (7)
Prostate carcinoma (6)
Osteosarcoma (5)
Primary tumor (3)
Leukemia (3)
Acute promyelocytic leukemia (3)
Prostate cancer (3)
HHV-6B infected (2)
Glioma (2)
Infiltrating ductal carcinoma (2)
Crohn's disease (2)
Breast adenocarcinoma (2)
Rheumatoid arthritis (2)
Acute lymphoblastic leukemia (2)
Colorectal cancer (2)
Normal (2)
Papillary thyroid carcinoma (2)
Not infected (2)
Head and neck squamous cell carcinoma (2)
Chronic lymphocytic leukemia (2)
Chronic myelogenous leukemia (2)
Reference (2)
Mammary tumor (2)
Colorectal adenocarcinoma (2)
Central nervous system cancer (2)
Control (2)

Technology Type

Mass Spectrometry (565)
Shotgun proteomics (277)
Mass spectrometry (250)
Bottom-up proteomics (145)
Mass spectrometry assay (117)
Affinity purification coupled with mass spectrometry proteomics (79)
Data-dependent acquisition (73)
Data-independent acquisition (45)
NMR spectroscopy (29)
Gel-based experiment (29)
SWATH MS (19)
Top-down proteomics (13)
Affinity proteomics (12)
ESI (9)
NMR spectroscopy assay (5)
Illumina HiSeq 2000 (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
DiaPASEF (4)
HDMSE (4)
SRM/MRM (4)
Proteogenomics (3)
All-ion fragmentation (2)
Illumina MiSeq, Illumina HiSeq 2500, ILLUMINA (1)
HiSeq X Ten, ILLUMINA, Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2500 (1)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
Illumina MiSeq (1)
Illumina HiSeq 2000, ILLUMINA (1)

Instrument Platform

Illumina NovaSeq 6000 (267)
NextSeq 500 (136)
Illumina HiSeq 2500 (121)
Illumina HiSeq 2000 (105)
Illumina HiSeq 4000 (99)
Illumina NovaSeq X (39)
NextSeq 550 (31)
NextSeq 2000 (26)
Illumina Genome Analyzer IIx (21)
GenePix 4000B [Axon Instruments] (19)
Scanning hardware (15)
G2565BA DNA microarray scanner [Agilent] (13)
Illumina HiSeq 3000 (11)
Illumina HiSeq 1500 (10)
Axon- GenePix4000B (9)
ScanArray 4000XL [PerkinElmer] (9)
DNBSEQ-G400 (9)
Illumina MiSeq (9)
Agilent G2505B scanner (8)
DNBSEQ-T7 (8)
418 [Affymetrix] (7)
ScanArray Express HT [PerkinElmer] (7)
ScanArray 5000 [PerkinElmer] (6)
NA (6)
BGISEQ-500 (6)
Dell PowerEdge R750; CPU: 2 × Intel Xeon Gold 6346 (32 Cores / 64 Threads); RAM: 188 GB (5)
PromethION (5)
Affymetrix GeneChip Scanner 3000 7G (5)
ArrayWoRx Biochip Reader [Applied Precision] (5)
GenePix 4000A [Axon Instruments] (5)

Publication Date

2010 (954)
2013 (883)
2014 (860)
2015 (831)
2012 (754)
2011 (730)
2008 (669)
2016 (503)
2009 (499)
2025 (388)
2026 (376)
2007 (325)
2022 (291)
2024 (263)
2023 (236)
2021 (202)
2017 (153)
2020 (151)
2018 (141)
2019 (127)
2006 (117)
2005 (88)
2004 (36)
2003 (4)
2002 (1)

UNIPROT ID/AC

9544.ENSMMUP00000000740 (19)
9544.ENSMMUP00000001377 (19)
9544.ENSMMUP00000001769 (19)
9544.ENSMMUP00000001915 (19)
9544.ENSMMUP00000002527 (19)
9544.ENSMMUP00000002781 (19)
9544.ENSMMUP00000003585 (19)
9544.ENSMMUP00000003611 (19)
9544.ENSMMUP00000004046 (19)
9544.ENSMMUP00000004823 (19)
9544.ENSMMUP00000005597 (19)
9544.ENSMMUP00000005753 (19)
9544.ENSMMUP00000005797 (19)
9544.ENSMMUP00000005910 (19)
9544.ENSMMUP00000006390 (19)
9544.ENSMMUP00000006423 (19)
9544.ENSMMUP00000007902 (19)
9544.ENSMMUP00000008373 (19)
9544.ENSMMUP00000008494 (19)
9544.ENSMMUP00000008956 (19)
9544.ENSMMUP00000009144 (19)
9544.ENSMMUP00000009462 (19)
9544.ENSMMUP00000009900 (19)
9544.ENSMMUP00000010357 (19)
9544.ENSMMUP00000010407 (19)
9544.ENSMMUP00000010774 (19)
9544.ENSMMUP00000010832 (19)
9544.ENSMMUP00000010920 (19)
9544.ENSMMUP00000011307 (19)
9544.ENSMMUP00000011868 (19)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:30769 (90)
CHEBI:15428 (86)
CHEBI:15891 (75)
CHEBI:15741 (72)
CHEBI:17368 (72)
CHEBI:28044 (67)
CHEBI:16335 (67)
CHEBI:18012 (67)
CHEBI:16737 (67)
CHEBI:30915 (66)
CHEBI:28300 (63)
CHEBI:25017 (63)
CHEBI:27897 (63)
CHEBI:17596 (63)
CHEBI:17268 (62)
CHEBI:16704 (62)
CHEBI:16919 (62)
CHEBI:16811 (61)
CHEBI:17568 (61)
CHEBI:32816 (61)
CHEBI:18186 (60)
CHEBI:6650 (60)
CHEBI:16708 (59)
CHEBI:27266 (59)
CHEBI:15354 (59)
CHEBI:24898 (58)
CHEBI:7916 (58)
CHEBI:26271 (57)
CHEBI:17895 (56)
CHEBI:17295 (56)

Metabolite Name

Taurine (68)
Creatine (67)
Uridine (65)
Hypoxanthine (65)
Adenosine (64)
Inosine (64)
Xanthine (62)
Guanosine (60)
L-Phenylalanine (59)
Choline (55)
Adenine (55)
Creatinine (55)
L-Tyrosine (54)
Uracil (52)
Glycine (49)
Betaine (49)
L-Glutamine (47)
L-Histidine (46)
Phenylalanine (46)
Citric acid (45)
Guanine (45)
Valine (44)
Pantothenic acid (44)
L-Threonine (43)
Ornithine (42)
Tyrosine (42)
Thymidine (42)
L-Arginine (41)
Glutamine (41)
Tryptophan (41)

First Public Date

2025 (58)
2014 (41)
2026 (38)
2024 (38)
2023 (16)
2022 (16)
2020 (16)
2019 (12)
2016 (12)
2017 (11)
2021 (10)
2018 (4)
2015 (2)
2013 (1)

Classification

bacteria (6)
fungi (3)
protozoa (1)

Modification

2x(15)N labeled L-lysine (4)
4x(15)N labeled L-arginine (4)
N6 (2)
+3amu) (1)
-17.026549 (1)
-18.010565 (1)
15.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
57.021464 (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (5244)
RNA-seq of coding RNA (1253)
Comparative genomic hybridization by array (212)
ChIP-seq (206)
Methylation profiling by array (178)
RNA-seq of coding RNA from single cells (167)
RNA-seq of non coding RNA (129)
Other (100)
Unknown experiment type (92)
Transcription profiling by RT-PCR (74)
RNA-seq of total RNA (54)
Methylation profiling by high throughput sequencing (53)
MicroRNA profiling by array (52)
ChIP-chip by tiling array (44)
Transcription profiling by tiling array (31)
Genotyping by array (29)
Proteomic profiling by array (29)
DNA-seq (17)
ChIP-chip by array (16)
Ribo-seq (14)
Transcription profiling by SAGE (13)
Cell line - High-throughput sequencing (12)
Animal - High-throughput sequencing (11)
RNAi profiling by array (11)
Animal - One-color microarray (10)
Human - One-color microarray (10)
Spatial transcriptomics by high-throughput sequencing (10)
Human - High-throughput sequencing (9)
ATAC-seq (8)
High-throughput sequencing (7)

Release Date

2010 (969)
2013 (896)
2014 (870)
2015 (824)
2012 (771)
2011 (750)
2008 (674)
2016 (512)
2009 (510)
2007 (324)
2025 (320)
2022 (264)
2021 (211)
2023 (210)
2024 (209)
2026 (203)
2020 (156)
2017 (151)
2018 (149)
2019 (142)
2006 (119)
2005 (93)
2004 (38)
2003 (5)
2002 (1)

Lab affiliation

University of Vienna, Faculty of Chemistry, Department of Analytical Chemistry (20)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany (10)
Professor of Molecular Physiology, Leiden Institute of Chemistry, Leiden University, The Netherlands (10)
Moffitt Cancer Center Tampa, FL, USA (6)
Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (5)
Principal Investigator Centre for Targeted Protein Degradation, School of Life Sciences (4)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (3)
Center of Human and Molecular Biology (ZHMB), Saarland University School of Medicine, Homburg, Germany (3)
Moffitt Cancer Center (3)
Pacific Northwest National Laboratory, USA (3)
Scripps Research (3)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
Aix-Marseille Univ, Inserm, CNRS, Institut Paoli-Calmettes, CRCM, Marseille Protéomique (2)
Boston College (2)
COI-NDM (University of Oxford) (2)
Cancer Biology Department, Fox Chase Cancer Center, Philadelphia, PA, USA (2)
Center for Functional Protein Assemblies (CPA), Department of Bioscience, TUM School of Natural Sciences, Technical University of Munich (TUM), Ernst-Otto-Fischer-Stra?e 8, 85748 Garching, Germany (2)
Chair of Proteomics and Bioanalytics, Technische Universität München, Germany (2)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
Department of Chemistry, The Scripps Research Institute (2)
Division of Surgery, Oncology, and Pathology, Department of Clinical Sciences, Lund University, Solvegatan 19, 223 62, Lund, Sweden. (2)
Faculty of Chemistry, Biotechnology and Food Science Norwegian University of Life Sciences Post Office Box 5003 1432, Ås Norway (2)
GSK (2)
Harvard Medical School (2)
Institute of Molecular Biology (IMB), Mainz, Germany (2)
Lund University (2)
Max Planck Institute for terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (2)
Molecular Oncology Chemical Biology and Molecular Medicine Moffitt Cancer Center & Research Institute, SRB3 12902 Magnolia Drive, Tampa, FL, 33612, USA. (2)
Molecular Physiology, Leiden Institute for Chemistry, Leiden University, The Netherlands (2)
Molecular Structure of Cell Signalling Laboratory, The Francis Crick Institute (2)

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Multi-hierarchical profiling the structure-activity relationships of engineered nanomaterials at nano-bio interfaces

Increasing concerns over the possible risks of nanotechnology necessitates breakthroughs in structure-activity relationship (SAR) analyses of engineered nanomaterials (ENMs) at nano-bio interfaces. However, current nano-SARs are often based on univariate assessments and fail to provide tiered views ...

2020-01-23 | MTBLS721 | MetaboLights

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3208

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv

ST000937 | MetabolomicsWorkbench

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv2247

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv

ST000936 | MetabolomicsWorkbench

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3651

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv

ST000941 | MetabolomicsWorkbench

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3285

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv

ST000940 | MetabolomicsWorkbench

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv0100

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv

ST000932 | MetabolomicsWorkbench

Protein-metabolite interactomics of carbohydrate metabolism reveal regulation of lactate dehydrogenase

Metabolic networks are interconnected and influence diverse cellular processes. The protein-metabolite interactions that mediate these networks are frequently low affinity and challenging to systematically discover. We developed mass spectrometry integrated with equilibrium dialysis for the disco...

2023-08-07 | MTBLS7237 | MetaboLights

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3916c

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv

ST000943 | MetabolomicsWorkbench

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv3799c

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv

ST000942 | MetabolomicsWorkbench

Activity-Based Metabolic Profiling of M. tuberculosis H37Rv Rv2553c

Not available

ORGANISM(S): Mycobacterium tuberculosis H37Rv