Adam - OmicsDI

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Unknown (5514)
Transcriptomics (1570)
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Multiomics (3)
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Organisms

Homo sapiens (715)
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cellular organisms (3)
Escherichia coli str. K-12 substr. MG1655 (2)
Geobacter metallireducens (1)

Organisms

Homo sapiens (70)
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Shewanella oneidensis MR-1 (3)
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Rhinolophus ferrumequinum (3)
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Calypte anna (2)
Strigops habroptila (2)
Apopellia endiviifolia (species B) (2)

Repository

biostudies-arrayexpress (1602)
ENA (366)
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pride (119)
MassIVE (105)
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geo (32)
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Tissue

Cell culture (23)
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Disease

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Reference (1)
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None- Acute Control (1)
Psoroptes ovis infestation (1)
Carcinoma (1)

Technology Type

Mass Spectrometry (121)
Shotgun proteomics (65)
Mass spectrometry (23)
Bottom-up proteomics (20)
Affinity purification coupled with mass spectrometry proteomics (18)
Data-dependent acquisition (8)
Data-independent acquisition (8)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Illumina HiSeq 2000 (4)
Top-down proteomics (4)
Illumina Genome Analyzer II (2)
EI (2)
ESI (2)
SWATH MS (2)
Illumina_450K (1)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer IIx, Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2500, Illumina HiSeq 2000 (1)
Life Tech - Solid (1)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
Affinity proteomics (1)
All-ion fragmentation (1)
DiaPASEF (1)
Gel-based experiment (1)
SRM/MRM (1)

Instrument Platform

NextSeq 500 (26)
Illumina NovaSeq 6000 (24)
Illumina HiSeq 4000 (19)
Illumina HiSeq 2500 (15)
NextSeq 2000 (11)
Illumina MiSeq (6)
Illumina HiSeq 2000 (6)
ScanArray 5000 [PerkinElmer] (5)
NextSeq 550 (5)
G2565BA DNA microarray scanner [Agilent] (4)
Illumina NovaSeq X (4)
GenePix Professional 4200A [Axon Instruments] (3)
GenePix 4000A [Axon Instruments] (3)
Axon GenePix 4000B scanning hardware (2)
DNBSEQ-G400 (2)
DNBSEQ-T7 (2)
Hamamatsu Nanozoomer S60 (1)
Bravo automated liquid handling robot station (Agilent) (1)
Illumina-compatible library preparation equipment (1)
Monarch RNA purification column system (1)
Standard mammalian cell culture equipment (1)
GeneQuant DNA/RNA caluculator (1)
Affymetrix Array scanner (1)
Affymetrix hybridization station (1)
Lightwave (1)
Axon Instruments GenePix 4000B scanner (1)
Agilent DNA Microarray Scanner Model # G2505B (1)
IScan (Illumina) (1)
Agilent scanner G2505B (1)
Affymetrix GeneChip Scanner 3000 7G (1)

Publication Date

2012 (272)
2011 (219)
2013 (213)
2010 (196)
2014 (173)
2015 (135)
2016 (108)
2008 (71)
2017 (53)
2005 (52)
2019 (46)
2009 (46)
2026 (43)
2024 (42)
2020 (42)
2022 (41)
2025 (40)
2007 (40)
2021 (39)
2018 (34)
2023 (33)
2006 (23)
2004 (2)
2003 (1)

UNIPROT ID/AC

10116.ENSRNOP00000002498 (2)
10116.ENSRNOP00000003224 (2)
10116.ENSRNOP00000013780 (2)
10116.ENSRNOP00000026719 (2)
10116.ENSRNOP00000034905 (2)
10116.ENSRNOP00000039971 (2)
10116.ENSRNOP00000049080 (2)
10116.ENSRNOP00000050143 (2)
10116.ENSRNOP00000052803 (2)
10116.ENSRNOP00000054637 (2)
10116.ENSRNOP00000061086 (2)
10116.ENSRNOP00000065048 (2)
10116.ENSRNOP00000065507 (2)
10116.ENSRNOP00000066654 (2)
10116.ENSRNOP00000066955 (2)
10116.ENSRNOP00000067711 (2)
1433E_RAT (2)
3HIDH_RAT (2)
6PGL_RAT (2)
9544.ENSMMUP00000000584 (2)
9544.ENSMMUP00000000801 (2)
9544.ENSMMUP00000001594 (2)
9544.ENSMMUP00000001794 (2)
9544.ENSMMUP00000001959 (2)
9544.ENSMMUP00000002322 (2)
9544.ENSMMUP00000002908 (2)
9544.ENSMMUP00000003176 (2)
9544.ENSMMUP00000003379 (2)
9544.ENSMMUP00000003922 (2)
P05067 (1)

CHEBI ID

CHEBI:62959 (1)
CHEBI:62958 (1)
CHEBI:32797 (1)
CHEBI:380 (1)
CHEBI:11036 (1)
CHEBI:16782 (1)
CHEBI:18739 (1)
CHEBI:18738 (1)
CHEBI:62621 (1)
CHEBI:26638 (1)
CHEBI:47569 (1)
CHEBI:9098 (1)
CHEBI:27277 (1)
CHEBI:30816 (1)
CHEBI:46315 (1)
CHEBI:27278 (1)
CHEBI:15301 (1)
CHEBI:9933 (1)
CHEBI:16632 (1)
CHEBI:46497 (1)
CHEBI:46502 (1)
CHEBI:36272 (1)
CHEBI:30518 (1)
CHEBI:36271 (1)
CHEBI:26894 (1)
CHEBI:9474 (1)
CHEBI:45729 (1)
CHEBI:27902 (1)
CHEBI:71392 (1)
CHEBI:77932 (1)

Metabolite Name

Proline (5)
Phenylalanine (5)
Valine (5)
Isoleucine (5)
Leucine (5)
Taurine (4)
Serine (4)
Lysine (4)
Citrulline (4)
Arginine (4)
3-phosphoglycerate (4)
Histidine (4)
Tyrosine (4)
Methionine (4)
Choline (4)
Ornithine (4)
Alanine (4)
Propionylglycine (3)
Isovalerylglycine (3)
Hexanoylglycine (3)
Cholesterol (3)
Maltose (3)
Tryptophan (3)
Malate (3)
Kynurenine (3)
Fumarate (3)
Cystine (3)
Carnitine (3)
Aspartate (3)
Asparagine (3)

First Public Date

2026 (48)
2025 (40)
2024 (39)
2019 (39)
2018 (37)
2023 (34)
2020 (31)
2014 (24)
2021 (23)
2022 (21)
2013 (12)
2015 (8)
2017 (5)
2016 (4)
2011 (1)

Modelling Approach

Ordinary differential equation model (6)
Constraint-based model (6)
Computational model (1)

Study status

Completed (1)

Lab affiliation

Faculty of Life Sciences (5)
University of Edinburgh (5)
University of Ottawa (4)
Institute of Plant Sciences Faculty of Agriculture The Hebrew University of Jerusalem Rehovot 76100 ISRAEL (3)
Cancer Research UK Edinburgh Centre, Institute of Genetics and Molecular Medicine, University of Edinburgh, Edinburgh, United Kingdom (2)
Department of Cellular and Molecular Medicine, University of Ottawa, 451 Smyth Road, Ottawa, Ontario, Canada K1H 8M5 (2)
Department of Gene Expression Institute of Molecular Biology and Biotechnology Faculty of Biology Adam Mickiewicz University Uniwersytetu Poznanskiego 6 61-614 Poznan (2)
National Institute of Standards and Technology (2)
Nutrient Metabolism & Signalling Laboratory, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Victoria 3800, Australia (2)
University Medical Center Groningen and University of Groningen (2)
1 Department of Biochemistry and Molecular Biology, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Clayton 3800, Australia. (1)
1. University of Edinburgh, Wellcome Trust Centre for Cell Biology, Edinburgh, United Kingdom. 2. Technische Universität Berlin, Institute of Biotechnology, Department of Bioanalytics, Berlin, Germany. (1)
1. Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. 2. Chair of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
1. Wellcome Trust Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, United Kingdom. 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. (1)
1Department of Medicine, University of Minnesota, 420 Delaware Street, SE, Minneapolis, Minnesota 55455, USA (1)
1Nutrient Metabolism & Signalling Laboratory, Metabolism, Diabetes and Obesity Program, Biomedicine Discovery Institute, Monash University, Victoria 3800, Australia. 2Department of Biochemistry and Molecular Biology, School of Biomedical Sciences, Faculty of Medicine, Nursing & Health Sciences, Monash University, Victoria 3800, Australia. (1)
Adam Mickiewicz Uiversity, Faculty of Biology, Plant Physiology Dpt, Poznań Poland (1)
Appel Alzheimer's Disease Research Institute Feil Family Brain and Mind Research Institute Weill Cornell Medicine New York, NY 10021 (1)
Associate Professor Department of Physiology Medical College of Wisconsin (1)
BMI, Faculty of Medicine, University of Ottawa (1)
Biochemistry & Proteomics Group, Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY, USA (1)
Biological Chemistry and Drug Discovery University of Dundee (1)
Biotech Research & Innovation Center (BRIC), University of Copenhagen, Denmark (1)
Biotechnology Department, Faculty of Biology, Adam Mickiewicz University, Umultowska Street 89, 61-614 Poznań, Poland (1)
CEA Grenoble, Commissariat à l'Energie Atomique et aux Energies Alternatives (1)
CRUK & MRC Oxford Institute for Radiation Oncology, University of Oxford, Department of Oncology, Old Road Campus Research Building, Oxford, OX37DQ, UK (1)
Cellzome - a GSK company Meyerhofstrasse 1, 69117 HEIDELBERG (1)
Center for Molecular Medicine University Medical Center Utrecht Utrecht 3584CG The Netherlands (1)
Center for Molecular Medicine, University Medical Center Utrecht and Utrecht University, Utrecht, The Netherlands (1)
Centre for Advanced Technology/ Adam Mickiewicz University, Poznań, Poland (1)

Keyword

Liver Extracts (1)

IsPrivate

False (23)

Model Flag

Non Kinetic (14)

Submitter Keywords

FROG (3)
FAIR-AIML (1)
Machine Learning Model (1)
Immuno-oncology (1)

Classification

helminths (1)
protozoa (1)

Modification

Not available (3)
15.994915 (2)
57.021464 (2)
6.020129 (1)

Study type

Transcription profiling by array (1129)
RNA-seq of coding RNA (146)
Comparative genomic hybridization by array (74)
ChIP-seq (37)
Methylation profiling by array (27)
ChIP-chip by tiling array (20)
RNA-seq of coding RNA from single cells (18)
ChIP-chip by array (16)
RNA-seq of non coding RNA (16)
Transcription profiling by tiling array (15)
Unknown experiment type (13)
Other (12)
DNA-seq (10)
Genotyping by array (6)
Animal - High-throughput sequencing (5)
MicroRNA profiling by array (5)
Cell line - High-throughput sequencing (4)
Methylation profiling by high throughput sequencing (4)
Human - High-throughput sequencing (3)
Transcription profiling by RT-PCR (3)
Spatial transcriptomics by high-throughput sequencing (3)
Ribo-seq (3)
RNA-seq of total RNA (3)
One-color microarray (2)
High-throughput sequencing (2)
ATAC-seq (2)
RIP-seq (2)
Single nucleus RNA sequencing (2)
Proteomic profiling by array (2)
GRO-seq (1)

Release Date

2022 (670)
2023 (646)
2021 (596)
2025 (596)
2024 (516)
2020 (510)
2012 (349)
2019 (345)
2018 (323)
2014 (321)
2013 (311)
2015 (299)
2011 (294)
2017 (277)
2010 (268)
2016 (264)
2026 (126)
2009 (99)
2008 (99)
2005 (65)
2007 (56)
2006 (40)
2002 (10)
2004 (9)
2003 (8)
2001 (6)
2000 (6)
1999 (2)
1997 (1)

Location

Canada (1)

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Human hepatocellular carcinomas validation set

A disease state experiment design type is where the state of some disease such as infection, pathology, syndrome, etc is studied. Keywords: disease_state_design Computed

ORGANISM(S): Homo sapiens

2007-08-09 | E-GEOD-8652 | biostudies-arrayexpress

ADAM interact with large protein complexes to regulate Histone modification, gene expression and splicing

PRJNA1158669 | ENA

Salt-Mediated Nanopore Detection of ADAM-17.

Not available

S-EPMC7288862 | biostudies-literature

ADAM 12 protease induces adipogenesis in transgenic mice.

Not available

S-EPMC1850877 | biostudies-literature

Preferred SH3 domain partners of ADAM metalloproteases include shared and ADAM-specific SH3 interactions.

Not available

S-EPMC4380453 | biostudies-literature

ADAM-17: the enzyme that does it all.

Not available

S-EPMC2841225 | biostudies-literature

Inhibition of MMPs and ADAM/ADAMTS.

Not available

S-EPMC6557692 | biostudies-literature

Protease profiling of liver fibrosis reveals the ADAM metallopeptidase with thrombospondin type 1 motif, 1 as a central activator of transforming growth factor beta

During chronic liver disease, tissue remodeling leads to dramatic changes and accumulation of matrix components. Matrix metalloproteases and their inhibitors have been involved in the regulation of matrix degradation. However, the role of other proteases remains incompletely defined. We undertook a ...

ORGANISM(S): Homo sapiens

2012-01-05 | E-GEOD-24667 | biostudies-arrayexpress

Structure of human ADAM-8 catalytic domain complexed with batimastat.

Not available

S-EPMC3370895 | biostudies-literature

Peptide-Based Inhibitors of ADAM and ADAMTS Metalloproteinases.

Not available

S-EPMC8335159 | biostudies-literature

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