Adenylate kinase

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Transcriptomics (4507)
Unknown (572)
Genomics (171)
Proteomics (58)
Metabolomics (17)
Models (11)
Other (3)
Genomic (1)

Organisms

Homo sapiens (1737)
Mus musculus (963)
Saccharomyces cerevisiae (173)
Arabidopsis thaliana (160)
Rattus norvegicus (141)
Drosophila melanogaster (89)
Caenorhabditis elegans (82)
Danio rerio (81)
Candida albicans (50)
Gallus gallus (34)
Sus scrofa (34)
Oryza sativa (32)
Bos taurus (31)
Oryza sativa Japonica Group (29)
Escherichia coli (26)
Ovis aries (24)
Mycobacterium tuberculosis (21)
Pimephales promelas (19)
Zea mays (19)
Anopheles gambiae (19)
Salmo salar (19)
Vibrio cholerae (19)
Solanum tuberosum (18)
Salmonella enterica subsp. enterica serovar Typhimurium (17)
Daphnia magna (16)
Hordeum vulgare (16)
Dictyostelium discoideum (15)
Rhizobium leguminosarum (15)
Helicobacter pylori (15)
Solanum lycopersicum (14)

Organisms

Homo sapiens (13)
Mus musculus (4)
synthetic organism (1)
Orbilia oligospora ATCC 24927 (1)
Mesomycoplasma hyopneumoniae (1)
Schmidtea mediterranea (1)
Bordetella pertussis (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Saccharomyces cerevisiae (1)
Bos taurus (1)
Rattus norvegicus (1)

Repository

biostudies-arrayexpress (4626)
ENA (29)
geo (23)
PAXDB (17)
PeptideAtlas (16)
MetaboLights (15)
BioModels (10)
pride (10)
MassIVE (9)
EGA (8)
iProX (3)
jPOST (3)
MetabolomicsWorkbench (2)
Cell Collective (1)
dbGaP (1)

Tissue

Cell culture (3)
Permanent cell line cell (2)
Unspecified (1)
Feces (1)
Brain (1)
Epithelial cell (1)
Fibroblast (1)
Liver (1)
Lung (1)
Seminal fluid (1)
Testis (1)

Disease

Normal (10)
Prostate cancer (2)
Lung cancer (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Spindle cell tumor (1)
VAT - Ventilated associated tracheobronchitis (1)
Chordoma (1)
CAMN (1)
Insulin resistance (1)
Xenografts with H1299 cell line (1)
TSWV infected (1)
Infected with Drechmeria coniospora (1)
Scrapie infected (1)
Pancreatic tumor (1)
Small cell lung cancer (1)
Neuroblastoma (1)
Fibrosis (1)
Rheumatoid arthritis (1)
Acute lymphoblastic leukemia (1)
Non-infected (1)
Gastrointestinal stromal tumor (1)
Influenza A (1)
Eimeria maxima infected (1)
Hypopituitary (1)
Tumor (1)
Atypical lung carcinoid (1)
Embryonal carcinoma (1)
Chronic active EB virus infection (1)
Osteosarcoma (1)
Multiple myeloma (1)

Technology Type

Mass spectrometry (12)
Mass Spectrometry (12)
Shotgun proteomics (4)
Mass spectrometry assay (3)
ESI (2)
Bottom-up proteomics (2)
Data-independent acquisition (2)
SWATH MS (2)
Illumina HiSeq 2000 (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)

Instrument Platform

BGISEQ-500 (53)
DNBSEQ-T7 (41)
Illumina HiSeq 2000 (18)
Illumina NovaSeq 6000 (9)
Illumina HiSeq 2500 (8)
Agilent G2505B scanner (6)
Agilent High resolution C scanner (5)
Maxwell 16 Instrument (5)
Genepix (4)
Agilent G2565AA and G2565BA Microarray Scanner (4)
GenePix 4000B [Axon Instruments] (4)
Scanning hardware (4)
Illumina MiSeq (4)
Illumina HiSeq 4000 (4)
NextSeq 500 (4)
Agilent high resolution C scanner (3)
Agilent Scanner G2505B (3)
The Agilent scanner G2565BA (3)
NanoDrop ND-1000 Spectrophotometer (NanoDrop Technologies) (3)
Illumina HiSeq 1500 (3)
Agilent Microarray Scanner (2)
2100 Bioanalyzer Agilent (2)
Agilent Micro Array Scanner G2565CA (2)
Agilent Technologies G2505B scanner (2)
Agilent Technologies Scanner G2505C (2)
Agilent�s Microarray Hybridization Oven (2)
Axon- GenePix4000B (2)
NextSeq 550 (2)
Illumina HiSeq 3000 (2)
Thermo Fisher (1)

Publication Date

2014 (651)
2015 (636)
2013 (622)
2012 (536)
2010 (523)
2016 (421)
2011 (342)
2005 (162)
2008 (126)
2006 (111)
2009 (93)
2021 (62)
2023 (61)
2007 (60)
2020 (56)
2017 (55)
2022 (54)
2018 (42)
2019 (37)
2026 (25)
2004 (19)
2024 (17)
2025 (13)
2003 (8)

UNIPROT ID/AC

143BA_DANRE (15)
143BB_DANRE (15)
143G1_DANRE (15)
7955.ENSDARP00000023429 (15)
7955.ENSDARP00000067603 (15)
7955.ENSDARP00000067945 (15)
7955.ENSDARP00000082327 (15)
7955.ENSDARP00000093747 (15)
7955.ENSDARP00000093780 (15)
7955.ENSDARP00000093791 (15)
7955.ENSDARP00000093801 (15)
7955.ENSDARP00000096295 (15)
7955.ENSDARP00000096352 (15)
7955.ENSDARP00000098342 (15)
7955.ENSDARP00000098726 (15)
7955.ENSDARP00000099550 (15)
7955.ENSDARP00000100434 (15)
7955.ENSDARP00000101311 (15)
7955.ENSDARP00000101467 (15)
7955.ENSDARP00000101525 (15)
7955.ENSDARP00000101862 (15)
7955.ENSDARP00000102682 (15)
7955.ENSDARP00000102749 (15)
7955.ENSDARP00000102775 (15)
7955.ENSDARP00000103208 (15)
7955.ENSDARP00000103318 (15)
7955.ENSDARP00000103819 (15)
7955.ENSDARP00000104168 (15)
Q2KJG0 (1)
O62619 (1)

ENSEMBL ID

ENSDARG00000000103 (16)
ENSDARG00000001431 (16)
ENSDARG00000001915 (16)
ENSDARG00000001950 (16)
ENSDARG00000001993 (16)
ENSDARG00000002480 (16)
ENSDARG00000005039 (16)
ENSDARG00000005560 (16)
ENSDARG00000005791 (16)
ENSDARG00000006399 (16)
ENSDARG00000007219 (16)
ENSDARG00000009285 (16)
ENSDARG00000009484 (16)
ENSDARG00000010149 (16)
ENSDARG00000010478 (16)
ENSDARG00000013078 (16)
ENSDARG00000016301 (16)
ENSDARG00000016393 (16)
ENSDARG00000017014 (16)
ENSDARG00000017624 (16)
ENSDARG00000018404 (16)
ENSDARG00000020008 (16)
ENSDARG00000021124 (16)
ENSDARG00000022767 (16)
ENSDARG00000023323 (16)
ENSDARG00000024746 (16)
ENSDARG00000025012 (16)
ENSDARG00000025301 (16)
ENSDARG00000025350 (16)
ENSDARG00000025635 (16)

CHEBI ID

CHEBI:15422 (9)
CHEBI:16908 (8)
CHEBI:16761 (8)
CHEBI:17794 (5)
CHEBI:17568 (5)
CHEBI:30769 (5)
CHEBI:15846 (4)
CHEBI:16236 (4)
CHEBI:16027 (4)
CHEBI:15318 (4)
CHEBI:17268 (4)
CHEBI:17234 (3)
CHEBI:15343 (3)
CHEBI:16526 (3)
CHEBI:16001 (3)
CHEBI:17835 (3)
CHEBI:17665 (3)
CHEBI:18021 (3)
CHEBI:15361 (3)
CHEBI:15351 (3)
CHEBI:17980 (1)
CHEBI:16136 (1)
CHEBI:16189 (1)
CHEBI:17709 (1)
CHEBI:17561 (1)
CHEBI:15377 (1)
CHEBI:24636 (1)
CHEBI:15379 (1)
CHEBI:16288 (1)
CHEBI:18361 (1)

Metabolite Name

Xanthine (6)
Uracil (5)
Valeric acid (5)
L-Alanine (4)
Thymine (4)
N-Acetylneuraminic acid (4)
Taurine (4)
L-Proline (4)
Adenosine (4)
Linoleic acid (4)
Glycerol 3-phosphate (4)
Adenine (4)
L-Tyrosine (4)
Hypoxanthine (4)
Cytidine 5'-monophosphate (CMP) (3)
UDP-N-acetylglucosamine (3)
Heptanoic acid (3)
Taurodeoxycholic acid (3)
Glycine (3)
Ala-Glu (3)
Propionic acid (3)
Isovaleric acid (3)
Hexanoic acid (3)
Phosphoenolpyruvate (3)
D-Erythrose 4-phosphate (3)
Benzoic acid (3)
Eicosapentaenoic acid (3)
Xanthosine (3)
Deoxycholic acid (3)
Cholic acid (3)

First Public Date

2014 (6)
2021 (5)
2024 (4)
2026 (2)
2025 (2)
2023 (2)
2022 (2)
2020 (2)
2016 (2)
2018 (1)
2017 (1)

Modelling Approach

Ordinary differential equation model (9)
Constraint-based model (1)

Lab affiliation

Cellular and Molecular Pharmacology, Quantitative Biosciences Institute, Gladstone Institutes, University of California San Francisco, CA, USA (1)
Centre for Tumour Biology, Barts Cancer Institute, Queen Mary University of London, London, UK (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (1)
Institute of Molecular Systems Biology, ETH Zurich (1)
Medical Bioanalytics Institute for Ophthalmic Research Eberhard-Karls-University Tuebingen (1)
Member, Pharmacy $ Pharmaceutical Sciences, St Jude Children's Research Hospital (1)
School of Environmental and Life Sciences, College of Engineering, Science and Environment, The University of Newcastle, University Drive, Callaghan, NSW 2308, Australia. Infertility and Reproduction Research Program, Hunter Medical Research Institute, New Lambton Heights, NSW 2305, Australia. (1)
School of Life Sciences, Nanjing University, 163 Xianlin Blvd., Nanjing 210023, China. (1)
Southern Medical University, Guangzhou, Guangdong, China (1)
Technische Universität Berlin, Chair of Bioanalytics, 10623 Berlin, Germany (1)

IsPrivate

False (10)

Classification

bacteria (2)

Study type

Transcription profiling by array (3749)
Unknown experiment type (380)
RNA-seq of coding RNA (82)
DNA-seq (78)
Comparative genomic hybridization by array (49)
ChIP-seq (47)
Other (42)
RNA-seq of non coding RNA (32)
ChIP-chip by array (19)
Transcription profiling by tiling array (15)
ChIP-chip by tiling array (14)
Methylation profiling by array (14)
Cell line - High-throughput sequencing (9)
Methylation profiling by high throughput sequencing (9)
Cell line - One-color microarray (8)
RNA-seq of coding RNA from single cells (8)
Animal - Two-color microarray (7)
Animal - One-color microarray (7)
Plant - One-color microarray (7)
One-color microarray (6)
High-throughput sequencing (5)
Human - Two-color microarray (4)
Human - One-color microarray (4)
Transcription profiling by RT-PCR (4)
MicroRNA profiling by array (4)
Cell line - Two-color microarray (3)
RNAi profiling by array (3)
Human - High-throughput sequencing (2)
RNA-seq of total RNA (2)
ChIP-chip by SNP array (1)

Release Date

2015 (663)
2014 (641)
2013 (639)
2012 (560)
2010 (549)
2016 (441)
2011 (354)
2005 (159)
2008 (134)
2006 (121)
2009 (113)
2023 (104)
2021 (98)
2022 (93)
2017 (86)
2020 (80)
2018 (69)
2007 (68)
2019 (64)
2025 (45)
2024 (40)
2004 (25)
2026 (24)
2003 (13)
2002 (6)
1999 (3)
2001 (2)
1998 (2)
2000 (1)
1997 (1)

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Nucleotide Analysis following Adenylate Kinase 4 knockdown

Not available

ORGANISM(S): Homo sapiens

ST000687 | MetabolomicsWorkbench

Transcription profiling of mouse adult primary neural stem cells when stimulated with the proliferative agent PACAP (pituitary adenylate cyclase-activating polypeptide)

Investigation of transcriptional changes induced in adult primary neural stem cells when stimulated with the proliferative agent PACAP (pituitary adenylate cyclase-activating polypeptide). In addition the data was compared to results obtained from a proliferation control (stimulation with a transmem...

ORGANISM(S): Mus musculus

2005-05-15 | E-MEXP-322 | biostudies-arrayexpress

Effect of adk1 knock-out mutation on global transcription

We investigated the effects of the variation in intracellular adenylic nucleotides pools due to the absence of the adenylate kinase Adk1p on the global yeast transcriptome. In this work, global transcription analyses were combined to measurements of intracellular nucleotides pools by HPLC. Keywords:...

ORGANISM(S): Saccharomyces cerevisiae

2008-04-17 | E-GEOD-9553 | biostudies-arrayexpress

Comparative genomic hybridization of Bordetella bronchiseptica strains 253 and RB50 to investigate the cya adenylate cyclase toxin (ACT) operon

Bordetella bronchiseptica is a gram-negative respiratory pathogen that causes a diverse spectrum of respiratory disease in a wide-range of hosts. We sought to determine if strains of B. bronchiseptica differed in virulence using the mouse model of infection. Mean lethal doses (LD50) of different B...

ORGANISM(S): Bordetella bronchiseptica

2007-10-01 | E-MEXP-1205 | biostudies-arrayexpress

Transcriptional responses of murine macrophages to the adenylate cyclase toxin of Bordetella pertussis

Three different recombinant forms of CyaA were used to investigate transcriptional responses of murine bone marrow-derived macrophages (BMDMs) using Affymetrix Mouse Genome Genechips. These forms were enzymically active, invasive CyaA, nonenzymically active, invasive CyaA (CyaA*) and non-enzymically...

ORGANISM(S): Mus musculus

2013-09-22 | E-GEOD-51075 | biostudies-arrayexpress

Adenylate kinase 4 Promotes the expression of Inflammatory Genes in Macrophages via Hif-1a

PRJNA599952 | ENA

Water content, adenylate kinase, and mitochondria drive adenylate balance in dehydrating and imbibing seeds.

Not available

S-EPMC5853452 | biostudies-literature

Conformational dynamics of adenylate kinase in crystals.

Not available

S-EPMC10883716 | biostudies-literature

Rad50 adenylate kinase activity regulates DNA tethering by Mre11/Rad50 complexes.

Not available