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Transcriptomics
(1395)
Genomics
(394)
Unknown
(252)
Proteomics
(48)
Metabolomics
(33)
Other
(4)
Methylation profiling
(3)
Models
(1)
Organisms
Homo sapiens
(544)
Mus musculus
(370)
Drosophila melanogaster
(177)
Saccharomyces cerevisiae
(87)
Arabidopsis thaliana
(54)
Rattus norvegicus
(52)
Rhizobium leguminosarum
(30)
Caenorhabditis elegans
(17)
Danio rerio
(16)
Mycobacterium tuberculosis
(15)
Zea mays
(12)
Schizosaccharomyces pombe
(12)
Dictyostelium discoideum
(10)
Staphylococcus aureus
(10)
Escherichia coli
(9)
Streptomyces venezuelae
(8)
Gallus gallus
(8)
Sus scrofa
(8)
Shewanella piezotolerans WP3
(7)
Neurospora crassa
(7)
Biomphalaria glabrata
(7)
Caulobacter vibrioides
(6)
Tetranychus urticae
(6)
Coprinopsis cinerea
(6)
Bos taurus
(6)
Escherichia coli str. K-12 substr. MG1655
(6)
Podospora anserina
(5)
Schistosoma mansoni
(5)
Oryza sativa
(5)
Aedes aegypti
(5)
Organisms
Mus musculus
(7)
Saccharomyces cerevisiae
(3)
Bacteroides thetaiotaomicron
(1)
Acinetobacter baumannii
(1)
Plasmodium falciparum
(1)
Repository
biostudies-arrayexpress
(1767)
MetaboLights
(33)
MassIVE
(26)
ENA
(15)
geo
(13)
EGA
(7)
pride
(7)
jPOST
(5)
iProX
(3)
PanoramaPublic
(2)
BioModels
(1)
EVA
(1)
Tissue
Brain
(1)
Epithelial cell
(1)
Fibroblast
(1)
Skeletal muscle
(1)
T cell
(1)
Disease
Normal
(5)
HPV positive
(1)
Cataract
(1)
HIV-associated dementia
(1)
B-precursor acute lymphoblastic leukemia
(1)
ER positive breast cancer
(1)
Non-diseased
(1)
Represent tolerant CD4+ T cells that have not been activated
(1)
Rheumatoid arthritis
(1)
Hepatocellular carcinoma
(1)
Pre diabetic
(1)
Prostate cancer
(1)
Cervical cancer
(1)
Technology Type
Mass spectrometry
(24)
Mass spectrometry assay
(9)
Mass Spectrometry
(7)
Gel-based experiment
(4)
Bottom-up proteomics
(2)
Chemical cross-linking coupled with mass spectrometry proteomics
(2)
SRM/MRM
(1)
Instrument Platform
Illumina HiSeq 2500
(43)
Illumina HiSeq 2000
(34)
NextSeq 500
(29)
Illumina HiSeq 4000
(23)
Illumina Genome Analyzer IIx
(7)
Illumina MiSeq
(6)
Axon- GenePix4000B
(4)
Illumina HiSeq 1000
(4)
Illumina HiSeq 3000
(3)
GeneChip Scanner 3000 [Affymetrix]
(2)
Illumina Genome Analyzer II
(2)
Illumina iSeq 100
(2)
Element AVITI
(1)
TruSeq Stranded Total RNA with Ribo Zero Human/Mouse/Rat.
(1)
CD Small RNA Library Prep Kit
(1)
Dell PowerEdge 630 with Intel Xeon E5-2630 processor (8 cores 16 threads) and 94 GB memory running CentOS Linux release 7.5.1804.
(1)
Perkin Elmer, USA
(1)
Agilent Scanner
(1)
Trimmomatic 0.32; Bowtie 2.2.3
(1)
Nanodrop N1000 spectrophotometer
(1)
AB SOLiD 4 System
(1)
Unix
(1)
ScanArray 5000 [PerkinElmer]
(1)
BAS-5000 [FUJIFILM]
(1)
Scanning hardware
(1)
Affymetrix Mouse Transcriptome Array 1.0
(1)
NextSeq 2000
(1)
MinION
(1)
HiSeq X Ten
(1)
Illumina HiSeq 1500
(1)
Publication Date
2013
(324)
2010
(233)
2015
(197)
2012
(195)
2014
(192)
2011
(156)
2016
(107)
2008
(86)
2009
(61)
2007
(52)
2020
(39)
2022
(31)
2018
(28)
2024
(25)
2019
(25)
2023
(21)
2021
(19)
2017
(17)
2025
(13)
2026
(13)
2006
(8)
2005
(8)
2004
(4)
UNIPROT ID/AC
Q9S7B5
(1)
P55217
(1)
CHEBI ID
CHEBI:16335
(11)
CHEBI:15428
(9)
CHEBI:16610
(9)
CHEBI:15741
(9)
CHEBI:17509
(9)
CHEBI:18012
(9)
CHEBI:30915
(9)
CHEBI:16856
(8)
CHEBI:16708
(8)
CHEBI:16750
(8)
CHEBI:16551
(8)
CHEBI:16737
(8)
CHEBI:17895
(8)
CHEBI:17596
(8)
CHEBI:16857
(7)
CHEBI:17992
(7)
CHEBI:16831
(7)
CHEBI:17148
(7)
CHEBI:30746
(7)
CHEBI:17115
(7)
CHEBI:17568
(7)
CHEBI:17750
(7)
CHEBI:18019
(7)
CHEBI:21547
(7)
CHEBI:15414
(6)
CHEBI:15961
(1)
CHEBI:17561
(1)
CHEBI:15699
(1)
CHEBI:17482
(1)
CHEBI:18367
(1)
Metabolite Name
Spermidine
(7)
1-Methyladenosine
(6)
L-Phenylalanine
(6)
Citicoline
(5)
Adenosine
(5)
L-Lysine
(5)
Glutathione
(5)
L-Proline
(5)
Putrescine
(5)
L-Arginine
(5)
L-Threonine
(5)
L-Histidine
(5)
Indole
(5)
Taurine
(5)
Xanthosine
(5)
Adenosine
(5)
Adenine
(5)
L-Serine
(5)
L-Methionine
(5)
L-Tyrosine
(5)
Hypoxanthine
(5)
UDP-glucose
(4)
N6,N6,N6-Trimethyl-L-lysine
(4)
Uridine
(4)
Taurine
(4)
Inosine
(4)
Glycine
(4)
Spermidine
(4)
Uracil
(4)
Thymine
(4)
First Public Date
2025
(4)
2019
(2)
2014
(2)
2026
(1)
2024
(1)
2023
(1)
2022
(1)
2018
(1)
2016
(1)
2015
(1)
Modelling Approach
Ordinary differential equation model
(1)
Lab affiliation
Department of Medical Biochemistry and Biophysics, Karolinska Institutet, Sweden Centre for Inherited Metabolic Diseases, Karolinska University Hospital, Sweden
(1)
Karolinska Institutet
(1)
New England Biolabs, Inc
(1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, NSW, Australia
(1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, New South Wales, 2052, Australia
(1)
Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, UNSW Sydney, NSW 2052, Australia
(1)
Systems Biology Initiative, School of Biotechnology and Biomolecular Sciences, University of New South Wales, New South Wales, 2052, Australia
(1)
Tags
pathogen
(3)
pathogen:bacterium
(2)
xref:PubMed:29703750
(1)
xref:PubMed:30206180
(1)
xref:PubMed:35245449
(1)
xref:PubMed:27698120
(1)
xref:PubMed:21507958
(1)
xref:PubMed:29410443
(1)
xref:PubMed:38184845
(1)
xref:PubMed:19073607
(1)
pathogen:protozoan
(1)
IsPrivate
False
(1)
Classification
bacteria
(2)
protozoa
(1)
Modification
N6
(1)
N6-dimethyl-L-lysine
(1)
Study type
Transcription profiling by array
(900)
ChIP-seq
(330)
RNA-seq of coding RNA
(255)
Unknown experiment type
(40)
Methylation profiling by high throughput sequencing
(31)
Other
(30)
ChIP-chip by tiling array
(27)
Methylation profiling by array
(23)
ChIP-chip by array
(14)
RNA-seq of non coding RNA
(13)
Transcription profiling by tiling array
(12)
Comparative genomic hybridization by array
(11)
RNA-seq of total RNA
(10)
DNA-seq
(9)
High-throughput sequencing
(8)
Proteomic profiling by array
(6)
Animal - High-throughput sequencing
(5)
Cell line - High-throughput sequencing
(5)
ATAC-seq
(4)
Human - High-throughput sequencing
(3)
MicroRNA profiling by array
(3)
RNA-seq of coding RNA from single cells
(3)
MeDIP-seq
(2)
Plant - High-throughput sequencing
(2)
Human - One-color microarray
(2)
MicroRNA profiling by high throughput sequencing
(2)
Bisulfite-seq
(2)
4C
(2)
RIP-seq
(2)
FAIRE-seq
(1)
Release Date
2013
(337)
2010
(242)
2012
(209)
2015
(203)
2014
(202)
2011
(178)
2016
(121)
2008
(97)
2009
(75)
2007
(59)
2020
(39)
2019
(33)
2018
(31)
2023
(30)
2021
(30)
2022
(28)
2017
(27)
2005
(16)
2006
(14)
2024
(12)
2025
(8)
2003
(8)
2004
(7)
2001
(5)
2000
(3)
2002
(2)
1999
(2)
1998
(1)
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Functional AdoMet Isosteres Resistant to Classical AdoMet Degradation Pathways.
Not available
S-EPMC5026608
|
biostudies-literature
Cite
Conserved metabolite regulation of stress granule assembly via AdoMet.
Not available
S-EPMC7401819
|
biostudies-literature
Cite
Nucleoside-modified AdoMet analogues for differential methyltransferase targeting.
Not available
S-EPMC7030947
|
biostudies-literature
Cite
AdoMet analog synthesis and utilization: current state of the art.
Not available
S-EPMC5138144
|
biostudies-literature
Cite
Unexpected electron transfer mechanism upon AdoMet cleavage in radical SAM proteins.
Not available
S-EPMC2736464
|
biostudies-literature
Cite
Methionine Adenosyltransferase Engineering to Enable Bioorthogonal Platforms for AdoMet-Utilizing Enzymes.
Not available
S-EPMC7516136
|
biostudies-literature
Cite
X-ray analysis of butirosin biosynthetic enzyme BtrN redefines structural motifs for AdoMet radical chemistry.
Not available
S-EPMC3791736
|
biostudies-literature
Cite
Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2.
Not available
S-EPMC2747168
|
biostudies-literature
Cite
Deconvoluting the Reduction Potentials for the Three [4Fe-4S] Clusters in an AdoMet Radical SCIFF Maturase.
Not available
S-EPMC6201763
|
biostudies-literature
Cite
AdoMet-dependent methylation, DNA methyltransferases and base flipping.
Not available
S-EPMC55914
|
biostudies-literature
Cite
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