Agarose - OmicsDI

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Transcriptomics (3897)
Genomics (2631)
Proteomics (2098)
Unknown (1868)
Metabolomics (14)
Other (11)
Genomic (3)
Methylation profiling (3)

Organisms

Homo sapiens (1854)
Mus musculus (1190)
Drosophila melanogaster (434)
Caenorhabditis elegans (364)
Saccharomyces cerevisiae (212)
Arabidopsis thaliana (189)
Rattus norvegicus (149)
Schizosaccharomyces pombe (88)
Escherichia coli (52)
Salmo salar (43)
Danio rerio (40)
Bos taurus (37)
Zea mays (35)
Sus scrofa (27)
Rattus rattus (26)
Mycobacterium tuberculosis (25)
Gallus gallus (23)
Triticum aestivum (23)
Pseudomonas aeruginosa (22)
Escherichia coli str. K-12 substr. MG1655 (19)
Candida albicans (19)
Pseudomonas putida (18)
Glycine max (15)
Streptomyces venezuelae (14)
Oryza sativa (13)
Pseudomonas aeruginosa PAO1 (13)
Oncorhynchus mykiss (13)
Daphnia magna (11)
Hordeum vulgare (11)
Escherichia coli K-12 (11)

Organisms

Homo sapiens (181)
Mus musculus (106)
Arabidopsis thaliana (30)
Saccharomyces cerevisiae (21)
Rattus norvegicus (18)
Escherichia coli (12)
Drosophila melanogaster (9)
Caenorhabditis elegans (5)
Mycobacterium tuberculosis (5)
Danio rerio (4)
mouse gut metagenome (4)
soil metagenome (4)
Salmo salar (3)
Solanum lycopersicum (3)
Oryza sativa (3)
Gossypium hirsutum (3)
1,4-dioxane-degrading enrichment culture (2)
Kaloula pulchra (2)
Candida albicans SC5314 (2)
Panax notoginseng (2)
Salmonella enterica subsp. enterica serovar Typhimurium (2)
Canis lupus familiaris (2)
Hordeum vulgare subsp. vulgare (2)
Klebsiella pneumoniae (2)
Plasmodium falciparum (2)
Toxoplasma gondii (2)
Bos taurus (2)
Solanum tuberosum (2)
synthetic construct (2)
Aquimarina agarilytica ZC1 (1)

Repository

biostudies-arrayexpress (5664)
pride (1978)
ENA (726)
geo (137)
jPOST (41)
iProX (38)
MassIVE (38)
NODE (15)
MetaboLights (12)
EGA (11)
dbGaP (3)
GNPS (2)
ExpressionAtlas (1)
GPMDB (1)

Tissue

Cell culture (557)
Epithelial cell (205)
Permanent cell line cell (122)
Brain (80)
Kidney (61)
Liver (59)
Blood (47)
HeLa cell (45)
Fibroblast (43)
Blood cell (42)
Plant cell (40)
Leaf (39)
Whole body (36)
Embryo (34)
Cell suspension culture (33)
T cell (33)
Lung (30)
Blood plasma (29)
Early embryonic cell (29)
Heart (29)
Embryonic stem cell (28)
Macrophage (26)
Cell line (3)
Duodenal cancer (1)
Duodenum (1)
Esophageal cancer (1)
Hematocyte (1)
Rectum (1)
Salivary gland (1)
Stool (1)

Disease

Breast cancer (59)
Normal (33)
Chronic myeloid leukemia (6)
Pre-diabetic (3)
Not applicable (2)
Rett syndrome (2)
Mitochondrial complex I deficiency (2)
Severe acute respiratory syndrome (2)
Infiltrating ductal carcinoma (2)
Squamous Cell Carcinoma (2)
Porphyria NOS (2)
Acute lymphoblastic leukemia (2)
Colorectal cancer (2)
Cancer (2)
Mammary tumor (2)
Colorectal adenocarcinoma (2)
Carcinoma (2)
Ovarian cancer (2)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Cocaine addiction (1)
Diabetes mellitus type 1 (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
Hepatomegaly (1)
Unspecified peripheral T-cell lymphoma (1)
Autosomal Recessive Retinitis Pigmentosa (1)
Uninfected 11dpi (1)
Asthma (1)
Post-stasis (1)
Burkitt's lymphoma (1)
Steatosis (1)

Technology Type

Mass Spectrometry (1978)
Shotgun proteomics (776)
Affinity purification coupled with mass spectrometry proteomics (685)
Bottom-up proteomics (389)
Data-dependent acquisition (261)
Gel-based experiment (162)
Data-independent acquisition (76)
Chemical cross-linking coupled with mass spectrometry proteomics (48)
Top-down proteomics (48)
Affinity proteomics (32)
SWATH MS (23)
SRM/MRM (20)
All-ion fragmentation (11)
Immunopeptidomics (10)
Mass spectrometry (9)
DiaPASEF (9)
HDMSE (9)
MSE (9)
Proteogenomics (7)
Glycoproteomics (5)
Mass spectrometry assay (3)
RNA mass spectrometry (3)
Mass spectrometry imaging (1)
Metaproteomics (1)
Two Dimensional Polyacrylamide Gel Electrophoresis (1)

Instrument Platform

Illumina HiSeq 2000 (127)
NextSeq 500 (75)
Illumina HiSeq 2500 (69)
Illumina NovaSeq 6000 (61)
Illumina MiSeq (48)
Illumina HiSeq 4000 (47)
NextSeq 550 (27)
Illumina Genome Analyzer IIx (22)
Illumina Genome Analyzer II (20)
Illumina HiSeq 1500 (16)
GenePix 4000B [Axon Instruments] (11)
NextSeq 2000 (11)
ScanArray [PerkinElmer] (10)
Axon GenePix 4000B scanning hardware (8)
DNBSEQ-G400 (8)
Illumina HiSeq 3000 (7)
Other (6)
418 [Affymetrix] (6)
Scanning hardware (6)
Illumina NovaSeq X (6)
Illumina Genome Analyzer (5)
ArrayWoRx Biochip Reader [Applied Precision] (5)
G2565BA DNA microarray scanner [Agilent] (5)
Vortex (5)
Element AVITI (4)
Agilent 2100 Bioanalyzer (4)
ScanArray 5000 [PerkinElmer] (4)
Axon- GenePix4000B (4)
ScanArray Express HT [PerkinElmer] (4)
Illumina HiSeq 1000 (4)

Publication Date

2013 (961)
2014 (665)
2012 (664)
2011 (646)
2010 (611)
2015 (592)
2016 (384)
2025 (370)
2024 (356)
2026 (331)
2023 (329)
2022 (296)
2021 (276)
2009 (235)
2008 (210)
2019 (193)
2020 (188)
2018 (142)
2017 (126)
2007 (113)
2005 (95)
2006 (83)
2004 (39)
2003 (1)

CHEBI ID

CHEBI:19229 (2)
CHEBI:19228 (2)
CHEBI:20794 (2)
CHEBI:19062 (2)
CHEBI:20607 (2)
CHEBI:17802 (2)
CHEBI:21891 (2)
CHEBI:142658 (1)
CHEBI:191184 (1)
CHEBI:68676 (1)
CHEBI:142657 (1)
CHEBI:15478 (1)
CHEBI:73007 (1)
CHEBI:178090 (1)
CHEBI:67040 (1)
CHEBI:16065 (1)
CHEBI:72961 (1)
CHEBI:60281 (1)
CHEBI:15625 (1)
CHEBI:15641 (1)
CHEBI:229468 (1)
CHEBI:229469 (1)
CHEBI:19688 (1)
CHEBI:16905 (1)
CHEBI:17768 (1)
CHEBI:20129 (1)
CHEBI:18283 (1)
CHEBI:29042 (1)
CHEBI:17431 (1)
CHEBI:16546 (1)

Metabolite Name

TAG 59:12 (15:0/22:6/22:6) (2)
TAG 55:7 (15:0/18:1/22:6) (2)
TAG 55:6 (15:0/18:0/22:6) (2)
TAG 55:1 (15:0/18:1/22:0) (2)
TAG 51:5 (15:0/18:1/18:4) (2)
TAG 51:4 (15:0/18:1/18:3) (2)
TAG 51:3 (15:0/18:1/18:2) (2)
TAG 51:2 (15:0/18:1/18:1) (2)
TAG 49:1 (15:0/16:0/18:1) (2)
TAG 48:1 (14:0/16:0/18:1) (2)
TAG 48:1 (15:0/15:0/18:1) (2)
TAG 47:1 (14:0/15:0/18:1) (2)
7-methylguanosine (2)
5-methylcytidine (2)
2'-O-methylguanosine (2)
2'-O-methylcytidine (2)
Pseudouridine (2)
1-methylguanosine (2)
TAG 53:6 (C15:0/C16:0/C22:6) (1)
TAG 53:6 (15:0/16:0/22:6) (1)
TAG 53:4 (15:0/18:1/20:3) (1)
TAG 51:1 (15:0/18:0/18:1) (1)
PC 37:6 (15:0/22:6) (1)
N-Acetyl spermine (1)
N-Acetyl putrescine (1)
Cadaverin (1)
N-Acetyl spermidine (1)
Tiglyl-Carnitine (1)
5-methyl tetrahydrofolic acid (1)
Succinyl-coa (1)

First Public Date

2014 (143)
2026 (76)
2025 (76)
2024 (70)
2023 (58)
2022 (56)
2021 (46)
2019 (40)
2020 (36)
2017 (30)
2018 (28)
2015 (26)
2013 (25)
2016 (16)

Classification

bacteria (31)
protozoa (5)
fungi (4)
viruses (2)

Modification

2x(15)N labeled L-lysine (7)
4x(15)N labeled L-arginine (7)
-17.026549 (1)
-18.010565 (1)
15.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
57.021464 (1)
6-dioxaoctanediamine derivatized cysteine (1)
79.966331 (1)
N6 (1)
N6-dimethyl-L-lysine (1)
Not available (1)

Study type

Transcription profiling by array (1800)
ChIP-seq (1601)
RNA-seq of coding RNA (710)
ChIP-chip by tiling array (240)
Methylation profiling by high throughput sequencing (202)
Comparative genomic hybridization by array (174)
RNA-seq of non coding RNA (160)
Other (143)
ChIP-chip by array (116)
Methylation profiling by array (113)
DNA-seq (69)
Genotyping by array (50)
Transcription profiling by tiling array (38)
Unknown experiment type (31)
High-throughput sequencing (21)
RNA-seq of total RNA (20)
Cell line - High-throughput sequencing (17)
CUT&RUN (14)
RIP-seq (13)
MNase-seq (9)
MicroRNA profiling by array (9)
ATAC-seq (8)
RNA-seq of coding RNA from single cells (8)
RNAi profiling by array (7)
MicroRNA profiling by high throughput sequencing (7)
Transcription profiling by SAGE (6)
Animal - High-throughput sequencing (6)
Animal - One-color microarray (5)
Hi-C (5)
Human - High-throughput sequencing (4)

Release Date

2013 (1013)
2014 (728)
2012 (710)
2011 (684)
2015 (637)
2010 (630)
2016 (429)
2009 (266)
2022 (252)
2008 (223)
2021 (220)
2023 (212)
2024 (192)
2025 (173)
2020 (172)
2019 (169)
2017 (166)
2018 (162)
2007 (132)
2005 (104)
2006 (93)
2026 (58)
2004 (49)
2003 (12)
1999 (11)
2001 (9)
2000 (9)
1998 (8)
2002 (7)
1997 (1)

Lab affiliation

EDyP (14)
Head of the Curie Institute Mass Spectrometry Platform (12)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (10)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (8)
Paris-Saclay Institute of Neuroscience, Team Melki, CNRS, Gif-sur-Yvette, France (8)
University of Bristol (8)
Imperial College London (7)
Amsterdam UMC, Vrije Universiteit Amsterdam, Medical Oncology, Cancer Center Amsterdam, OncoProteomics Laboratory, Amsterdam, Netherlands (6)
University of Edinburgh (6)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (5)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (5)
Chemistry Department, Boston College, USA (5)
Laboratory of Fungal Pathogenesis, Centre for DNA Fingerprinting and Diagnostics (CDFD), Hyderabad, India (5)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (5)
Biochemistry Center Heidelberg, University of Heidelberg, Germany (4)
Boston College (4)
Carnegie Mass Spectrometry Facility (4)
Cleveland Clinic Lerner Research Institute Cardiovascular and Metabolic Sciences (4)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, 792 Elizabeth St, Melbourne 3000, Australia (4)
ETH Zurich (4)
German Cancer Consortium (DKTK), partner site Freiburg German Cancer Research Center (DKFZ) Foundation under Public Law c/o Department of Urology Zentrale Klinische Forschung (ZKF) Medical Center-University of Freiburg Breisacher Str. 66, 79106 Freiburg, Germany (4)
Harvard Medical School (4)
Institute of Molecular Biology (IMB), Mainz, Germany (4)
Max Delbrück Center for Molecular Medicine (4)
Oregon Hearing Research Center Oregon Health & Science University Portland, OR, USA (4)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (4)
School of Food and Biological Engineering, Hefei University of Technology, Hefei, 230009, China (4)
The University of Melbourne (4)
UCSF (4)

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ISOLATION OF AGAROSE DIGESTERS

ISOLATION OF AGAROSE DIGESTERS FROM AGAROSE ENRICHED EARTHWORM GUT

PRJEB27741 | ENA

Identification of inositol 1,4,5-trisphosphate-binding proteins by heparin-agarose affinity purification and LTQ ORBITRAP MS in Oryza sativa

Inositol 1,4,5-trisphosohate (IP3) and its receptors play a pivotal role in calcium signal transduction in mammals. Some fractions of tonoplast and endoplasmic reticulum membranes have high affinity binding activity for IP3, and IP3 can induce Ca2+ release in several plants. However, no homologues o...

ORGANISM(S): Oryza sativa (Rice)

2014-09-25 | PXD000763 | Pride

Depletion Assisted Hemin Affinity (DAsHA) Proteomics Reveals an Expanded Landscape of Heme Binding Proteins in the Human Proteome

Heme b (iron protoporphyrin IX) plays important roles in biology as a metallocofactor and signaling molecule. However, the targets of heme signaling and the network of proteins that mediate the exchange of heme from sites of synthesis or uptake to heme dependent or regulated proteins are poorly unde...

ORGANISM(S): Homo sapiens (Human)

2023-05-10 | PXD037165 | Pride

Heme Heme trafficking Proteomics Heme binding protein Cell stress Heme affinity Hemin agarose Labile heme pool

Bio-printing cell-laden Matrigel-agarose constructs.

Not available

S-EPMC5603305 | biostudies-literature

Evaluation of Marine Agarose Biomaterials for Tissue Engineering Applications.

Not available

S-EPMC7919481 | biostudies-literature

Biohybrid Carbon Nanotube/Agarose Fibers for Neural Tissue Engineering.

Not available

S-EPMC3163387 | biostudies-literature