Agriculture - OmicsDI

Show results for

Unknown (104164)
Genomics (15291)
Proteomics (614)
Transcriptomics (365)
Metabolomics (164)
Models (17)
Other (7)
Methylation profiling (4)
Genomic (3)

Organisms

Arabidopsis thaliana (78)
Bos taurus (29)
Oryza sativa (26)
Homo sapiens (25)
Triticum aestivum (21)
Mus musculus (20)
Sus scrofa (19)
Zea mays (17)
Solanum tuberosum (16)
Rattus norvegicus (16)
Solanum lycopersicum (15)
Gallus gallus (13)
Oncorhynchus mykiss (12)
Glycine max (9)
Apis mellifera (8)
Oryza sativa Japonica Group (7)
Saccharomyces cerevisiae (7)
Oryza sativa Indica Group (6)
Gossypium hirsutum (4)
Mytilus galloprovincialis (4)
Rhipicephalus microplus (3)
Fusarium fujikuroi (3)
Caulobacter vibrioides (2)
Viridiplantae (2)
Mus sp. (2)
Bradyrhizobium diazoefficiens USDA 110 (2)
Zea mays subsp. mays (2)
Bacteria Latreille et al. 1825 (1)
fungal pathogen UWFP-388 (1)
Severe acute respiratory syndrome coronavirus 2 (1)

Organisms

soil metagenome (745)
Bos taurus (200)
Arabidopsis thaliana (186)
Mus musculus (171)
Oryza sativa (131)
Escherichia coli (116)
Sus scrofa (114)
Triticum aestivum (85)
Gallus gallus (82)
Glycine max (70)
Bacillus velezensis (69)
Klebsiella pneumoniae (67)
Homo sapiens (65)
Zea mays (63)
rhizosphere metagenome (63)
gut metagenome (55)
unidentified (50)
Streptococcus suis (49)
Solanum lycopersicum (49)
Arachis hypogaea (45)
mouse gut metagenome (45)
feces metagenome (39)
Oryza sativa Japonica Group (39)
bovine gut metagenome (37)
Ovis aries (37)
Camellia sinensis (37)
Tremella fuciformis (34)
plant metagenome (34)
Buchnera aphidicola (30)
Gossypium hirsutum (30)

Repository

ENA (15243)
pride (359)
biostudies-arrayexpress (213)
iProX (190)
geo (183)
MetaboLights (147)
jPOST (30)
MassIVE (28)
EVA (21)
BioModels (17)
MetabolomicsWorkbench (10)
PAXDB (8)
EGA (7)
GNPS (7)
dbGaP (3)
GPMDB (1)

Tissue

Leaf (74)
Plant cell (54)
Cell culture (38)
Root (34)
Whole body (20)
Seed (13)
Epithelial cell (8)
Plant (7)
Midgut (6)
Liver (5)
Blood serum (4)
Endosperm (4)
Flower (4)
Lung (4)
Shoot (4)
Anther (3)
Embryo (3)
Fruit (3)
Kidney (3)
Ovary (3)
Pollen (3)
Seedling (3)
Skin (3)
Spermatozoon (3)
Feces (2)
Fruit body (2)
Fungal cell (2)
Seedlings (1)
Fungal cells (1)
Blood (1)

Disease

Breast cancer (5)
Disease free (5)
Wounds and Injuries (4)
Fungal infection (2)
COVID-19 (1)
None (1)
Cutaneous melanoma (1)
Phytophthora capsici infected (1)
Not Available (1)
Obesity (1)
Bacterial infectious disease (1)
Duodenal ulcer (1)
Fungal infectious disease (1)
Hepatocellular carcinoma (1)
Influenza (1)
Malaria (1)
Mastitis (1)
Sleep disorder (1)
Vascular dementia (1)

Technology Type

Mass Spectrometry (369)
Shotgun proteomics (212)
Mass spectrometry (106)
Bottom-up proteomics (54)
Mass spectrometry assay (36)
Data-dependent acquisition (24)
Gel-based experiment (22)
Data-independent acquisition (17)
SWATH MS (17)
Top-down proteomics (15)
ESI (10)
Affinity purification coupled with mass spectrometry proteomics (10)
NMR spectroscopy (6)
HDMSE (6)
Mass spectrometry imaging (5)
All-ion fragmentation (3)
Metaproteomics (3)
SRM/MRM (3)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
Gel-free quantification method (2)
MSE (2)
Illumina HumanOmni1-Quad-Illumina GenomeStudio (1)
NMR spectroscopy assay (1)
Gel-based quantification method (1)
Immunopeptidomics (1)
Proteogenomics (1)
Two Dimensional Polyacrylamide Gel Electrophoresis (1)

Instrument Platform

Illumina HiSeq 2000 (13)
Illumina NovaSeq 6000 (12)
Illumina HiSeq 2500 (8)
Q Exactive (7)
- (6)
Orbitrap Fusion (4)
NextSeq 500 (3)
Illumina HiScanSQ (2)
NextSeq 550 (2)
Illumina HiSeq 4000 (2)
Agilent Quadrupole Time-of-Flight LC/MS (2)
ISQ (2)
Q-Exactive (2)
Xevo G2-XS QTof (2)
PromethION (1)
Agilent G2505B scanner (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
GenePix Personal 4100A [Axon Instruments] (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq X (1)
TruSeq (Illumina, Novogene, Genomic Centre Cambridge, CB4 0FW, UK.) (1)
NanoDrop spectrophotometer and the Agilent 2100 Bioanalyzer (1)
Histopaque-1077,FACSAria Fusion Sorter,Flow Cytometer (1)
DNBSEQ-G400 (1)
DNBSEQ-T7 (1)
Illumina HiSeq 2000, Illumina HiSeq 2500, Illumina Genome Analyzer IIx (1)
AB 3730xl (1)
BGISEQ-500 (1)
Illumina (1)
Affymetrix (1)

Publication Date

2025 (154)
2022 (133)
2026 (99)
2023 (94)
2024 (82)
2021 (77)
2020 (62)
2019 (60)
2015 (51)
2016 (47)
2018 (40)
2010 (39)
2014 (38)
2011 (36)
2013 (32)
2017 (28)
2012 (27)
2009 (15)
2008 (12)
2005 (4)
2007 (2)
2006 (2)

UNIPROT ID/AC

A0A0V2FFD6 (2)
A0A0V2FFH3 (2)
P0CAW2 (2)
P0CAW8 (2)
P0CAU4 (2)
Q45976 (2)
A0A0H3C9J4 (2)
B2CT00 (2)
Q9FGX2 (2)
Q0WV96 (2)
Q9FDW1 (2)
Q9SUS1 (2)
Q8VWJ2 (2)
Q93WY4 (2)
Q9SZP1 (2)
Q8S8P5 (2)
Q39028 (2)
Q9SI37 (2)
Q39026 (2)
P31152 (2)
H9D0Z7 (2)
Q39023 (2)
Q13163 (2)
Q9S7U9 (2)
Q9C5H5 (2)
C0LGN2 (2)
O04609 (2)
O22921 (2)
P45985 (2)
Q02750 (2)

CHEBI ID

CHEBI:6650 (17)
CHEBI:30769 (15)
CHEBI:17992 (14)
CHEBI:15741 (14)
CHEBI:17895 (14)
CHEBI:17295 (14)
CHEBI:25017 (13)
CHEBI:16335 (13)
CHEBI:15940 (13)
CHEBI:18012 (13)
CHEBI:17368 (13)
CHEBI:17234 (11)
CHEBI:6801 (6)
CHEBI:16236 (2)
CHEBI:15343 (2)
CHEBI:15361 (2)
CHEBI:17835 (2)
CHEBI:17794 (2)
CHEBI:16001 (2)
CHEBI:17665 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:16908 (2)
CHEBI:16526 (2)
CHEBI:15846 (2)
CHEBI:18021 (2)
CHEBI:52679 (1)
CHEBI:26710 (1)
CHEBI:18153 (1)
CHEBI:16240 (1)

Metabolite Name

Guanosine (20)
L-Phenylalanine (20)
Cytidine (18)
L-Tyrosine (18)
Guanine (17)
Dodecanedioic acid (17)
Azelaic acid (17)
Uridine (17)
Hypoxanthine (17)
Taurine (16)
Citric acid (16)
Adenosine (16)
Adenine (16)
Xanthine (16)
Xanthosine (15)
16-Hydroxyhexadecanoic acid (15)
Suberic acid (15)
Thymidine (15)
Inosine (15)
Uracil (14)
Ornithine (14)
L-Histidine (14)
Tetradecanedioic acid (14)
Pantothenic acid (13)
Sebacic acid (13)
Cytosine (13)
Palmitic acid (13)
L-Tryptophan (13)
L-Lysine (12)
Allantoin (12)

First Public Date

2025 (2340)
2024 (2320)
2026 (1724)
2023 (1706)
2022 (1454)
2021 (1153)
2020 (1091)
2019 (876)
2018 (673)
2017 (570)
2014 (416)
2015 (321)
2016 (320)
2013 (275)
2012 (2)
2011 (1)
2010 (1)

Modelling Approach

Ordinary differential equation model (14)
Physiologically based pharmacokinetic model (4)
Population model (1)
Constraint-based model (1)

Lab affiliation

Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Fujian Agriculture and Forestry University (5)
School of Agriculture, Meiji University (4)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (3)
CSIRO Agriculture and Food (3)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (3)
College of Resources and Environment, Fujian Agriculture and Forestry University (3)
Department of Molecular Biology, College of Agriculture, Life Sciences and Natural Resources, University of Wyoming, United States of America (3)
Gansu Provincial Key Lab of Aridland Crop Science/ Gansu Agricultural University, Lanzhou, China (3)
Huazhong Agricultural University (3)
Institute of Plant Sciences Faculty of Agriculture The Hebrew University of Jerusalem Rehovot 76100 ISRAEL (3)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, China (3)
State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-Products, Key Laboratory of Biotechnology in Plant Protection of Ministry of Agriculture and Zhejiang Province, Institute of Plant Virology, Ningbo University, Ningbo 315211, China (3)
Agriculture and Agri-Food Canada (2)
Agriculture and Agrifood Canada Morden Research and Development Centre (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Department of Fisheries, College of Animal Science and Technology, Hunan agriculture university (2)
Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu, China;Key Laboratory of Soybean Disease and Pest Control (Ministry of Agriculture and Rural Affairs) (2)
Department of Plant and Microbial Biology, University of California at Berkeley, Berkeley, CA 94720, USA Plant Gene Expression Center, U.S. Department of Agriculture Agricultural Research Service, Albany, CA 94710, USA (2)
Division of Applied Life Science, Graduate School of Agriculture (2)
Food Safety Centre, Tasmanian Institute of Agriculture, University of Tasmania, Hobart, Tasmania, Australia (2)
Institute of Insect Sciences, College of Agriculture and Biotechnology, Zhejiang University, China (2)
NARO Institute of Crop Science, National Agriculture and Food Research Organization (2)
No. 2 West Yuanmingyuan Road, Haidian District, Beijing (2)
Norwegian University of Life Sciences (2)
Qingdao Agriculture University (2)
Research Faculty of Agriculture, Hokkaido University, Sapporo, Japan (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
School of Agriculture, Meiji University, Japan (2)