Ahmad Ahmad A - OmicsDI

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Unknown (8132)
Transcriptomics (92)
Proteomics (75)
Genomics (53)
Models (34)
Metabolomics (9)
Clinical (1)
Other (1)
Multiomics (1)

Organisms

Homo sapiens (85)
Drosophila melanogaster (27)
Mus musculus (20)
Aliivibrio salmonicida LFI1238 (3)
Rattus norvegicus (3)
Xenopus laevis (1)
Mus (1)
Simiiformes sp. (1)
Lutzia (1)
unclassified eukaryotes (1)
unidentified plant (1)
Danio rerio (1)
Bacillus subtilis (1)
Elaeis guineensis (1)
Solanum melongena (1)
Aspergillus parasiticus (1)
Aspergillus flavus (1)
Burkholderia vietnamiensis G4 (1)
Burkholderia pseudomallei (1)
Oryza sativa (1)
Pseudomonas putida KT2440 (1)
Mycobacterium tuberculosis H37Rv (1)
Caenorhabditis elegans (1)
Candida albicans (1)
Arabidopsis thaliana (1)
Macleaya cordata (1)
Popeia (1)
Naja philippinensis (1)
Hordeum vulgare (1)
Saccharomyces cerevisiae (1)

Organisms

Homo sapiens (7)
Mus musculus (2)
Drosophila melanogaster (1)

Repository

biostudies-arrayexpress (102)
pride (51)
BioModels (34)
EGA (30)
ENA (14)
MassIVE (13)
MetaboLights (8)
PanoramaPublic (4)
iProX (3)
geo (1)
GNPS (1)
GPMDB (1)
PAXDB (1)
PeptideAtlas (1)

Tissue

Kidney (5)
Cell culture (4)
Brain (3)
Epithelial cell (3)
Cardiomyocyte cell line (2)
Monocyte (2)
Colon (2)
Whole body (2)
Liver (2)
Others (1)
Ovarian fibroblast (1)
Rectum (1)
Cytotoxic T-lymphocyte (1)
Epithelial ovarian cancer cell (1)
Frontal lobe (1)
Helper T-lymphocyte (1)
Culture condition:CD4+ cell (1)
Oligodendrocyte (1)
Myoblast (1)
Cecum (1)
B-lymphocyte (1)
JURKAT cell (1)
Photosynthetic cell (1)
Natural killer cell (1)
White adipose tissue (1)
Milk (1)
Flower (1)
Blood platelet (1)
Mesenchymal stem cell (1)
Bone marrow (1)

Disease

Disease free (2)
Diabetes mellitus (1)
Colorectal cancer (1)
Not Available (1)
Oligodendroglioma (1)
Multiple sclerosis (1)
Allergic asthma (1)
Thrombocytopenia (1)
Pancreatic cancer (1)
Cardiovascular system disease (1)
Parkinson's disease (1)
Papillary renal cell carcinoma (1)
Type 2 diabetes mellitus (1)
Lung cancer (1)
Inflammatory bowel disease (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (51)
Shotgun proteomics (27)
Bottom-up proteomics (11)
Illumina 15K (8)
Mass spectrometry (7)
Data-dependent acquisition (4)
SWATH MS (4)
Affinity purification coupled with mass spectrometry proteomics (3)
Metaproteomics (2)
Gel-based experiment (2)
Top-down proteomics (2)
Chemical cross-linking coupled with mass spectrometry proteomics (2)
AB 5500 Genetic Analyzer, Ion Torrent PGM (1)
Illumina HiSeq 1000, Ion Torrent PGM, Illumina Genome Analyzer IIx (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Affymetrix 6.0 (1)
Mass spectrometry assay (1)
DiaPASEF (1)
Data-independent acquisition (1)

Instrument Platform

Q Exactive (5)
Thermo Q Exactive HF-X Orbitrap (2)
LTQ Orbitrap Elite (2)
Affymetrix GeneChip (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Instrument (1)
Thermo Fischer-Orbitrap Fusion Tribrid (1)
Impact II (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
TimsTOF Pro 2 (1)
Orbitrap Fusion (1)
NEG_UPLC-QTOF-MS (1)
POS_UPLC-QTOF-MS (1)
240-MS GC Ion Trap (Varian) (1)
Flow injection analysis MS - positive (1)
Direct infusion MS - positive (1)
Flow injection analysis MS - negative (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)
QExactive (1)

Publication Date

2010 (25)
2024 (22)
2020 (22)
2014 (22)
2013 (18)
2015 (15)
2023 (14)
2022 (11)
2012 (9)
2011 (9)
2026 (9)
2025 (8)
2019 (5)
2021 (5)
2017 (4)
2016 (4)
2008 (4)
2009 (3)
2018 (3)
2007 (2)
2006 (2)
2003 (1)

UNIPROT ID/AC

P01106 (2)
Q9Y243 (1)
P14672 (1)
P41743 (1)
Q8WYR1 (1)
Q9UKT4 (1)
Q9UM11 (1)
P06400 (1)
P20248 (1)
P24864 (1)
P24385 (1)
Q6NY64 (1)
Q561X1 (1)
Q4KMI8 (1)
Q7T3L7 (1)
P35568 (1)
P01308 (1)
P06213 (1)
SERF1_HUMAN (1)
ZN696_HUMAN (1)
CX6B2_HUMAN (1)
FGF11_HUMAN (1)
CRX_HUMAN (1)
ZN195_HUMAN (1)
ISL2_HUMAN (1)
ZN135_HUMAN (1)
PD2R_HUMAN (1)
GNRHR_HUMAN (1)
S13A1_HUMAN (1)
M4A6E_HUMAN (1)

ENSEMBL ID

ENSG00000247315 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:16618 (2)
CHEBI:16152 (2)
CHEBI:16134 (2)
CHEBI:50211 (1)
CHEBI:18348 (1)
CHEBI:27406 (1)
CHEBI:27404 (1)
CHEBI:27499 (1)
CHEBI:28433 (1)
CHEBI:27510 (1)
CHEBI:9907 (1)
CHEBI:15436 (1)
CHEBI:27484 (1)
CHEBI:27999 (1)
CHEBI:28728 (1)
CHEBI:15627 (1)
CHEBI:15908 (1)
CHEBI:28839 (1)
ChEBI:CHEBI:17855 (1)
CHEBI:35896 (1)
CHEBI:16144 (1)
CHEBI:9100 (1)
CHEBI:17513 (1)
CHEBI:16906 (1)
CHEBI:28593 (1)
CHEBI:28922 (1)
CHEBI:28852 (1)
CHEBI:34939 (1)
CHEBI:27696 (1)
CHEBI:27555 (1)

Metabolite Name

Cholesterol (2)
3-methyl-2-oxobutyrate (2)
Kynurenine (2)
Pyruvate (2)
NADPH (2)
NADP (2)
NADH (2)
Alpha-ketoglutarate (2)
Adenosine (2)
Propionyl coenzyme A (1)
Phosphatidic Acid (1)
Ketoglutaric acid (1)
D-myo-Inositol-1,4,5-triphosphate (1)
Deoxyguanylate (1)
Cytidine 5-diphosphocholine (1)
Acetylamino-acetic acid (1)
6-Deoxy-L-galactonic acid (1)
3-Phosphoadenosine 5-phosphosulfate (1)
3-hydroxypentanedioic acid (1)
3-Hydroxybutyryl coenzyme A (1)
2-Deoxyuridine 5-monophosphate (1)
2-Deoxy-D-ribonic acid (1)
2-Deoxy-5-cytidylic acid (1)
2,3-Diphospho-D-glyceric acid (1)
2-(Hydroxymethyl)butanoic acid (1)
Uridine 5-diphosphogalactose (1)
Pyridoxamine-5-phosphate (1)
N-Hexanoyl-glycine (1)
Ne-Acetyl-lysine (1)
Nalpha-Acetyl-L-lysine (1)

First Public Date

2026 (4)
2024 (3)
2025 (2)
2017 (2)
2023 (1)
2021 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (27)
Physiologically based pharmacokinetic model (3)
Differential equation model (1)
Delayed differential equation model (1)
Stochastic differential equation model (1)
Constraint-based model (1)

Study status

Completed (1)

Lab affiliation

The University of Melbourne (3)
College of Life Sciences, University of Dundee (2)
Principle Investigator (2)
Institut Curie (1)
King Abdullah University of Science and Technology (KAUST), Bioscience Division (1)
Department of Dermatology, University of Wisconsin-Madison, Madison, WI, USA (1)
Max Planck Institute for Heart and Lung Research (1)
Optys Tech Corporation (1)
King's College London School of Cardiovascular and Metabolic Medicine & Sciences James Black Centre 125 Coldharbour Lane, London, SE5 9NU (1)
Department of Biology, University of Toronto Mississauga, Mississauga,Canada Department of Cell and Systems Biology, University of Toronto, Toronto, Canada (1)
Mycology and Pathology Branch, Forest Biodiversity Division, Forest Research Institute Malaysia (FRIM) (1)
NextGen Health CSIR South Africa (1)
Institute of Plant Physiology and Biotechnology University of Hohenheim (1)
The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK (1)
Austrian Research Center for Forests (1)
Sunnybrook Research Institute, Toronto, ON, Canada / Department of Biochemistry, University of Toronto, Toronto, ON, Canada / Department of Biochemistry and Molecular Biology, Alberta Children’s Hospital Research Institute, Hotchkiss Brain Institute, University of Calgary, Calgary, AB, Canada / Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada (1)
Biologics R&D Group/ Biomedical Program CSIRO Manufacturing Bayview Ave/ Research Way, Clayton, VIC3168 Australia (1)
Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, TX (1)
Division of Animal Genetics and Breeding, Faculty of Veterinary Sciences and Animal Husbandry, SKUAST-Kashmir, India (1)
Eppley Institute for Research in Cancer and Allied Diseases, Fred & Pamela Buffett Cancer Center, University of Nebraska Medical Center (1)
Mass Spectrometry Facility Max Planck Institute for Molecular Genetics (1)
CNS Genetic Diseases Research, Neuroscience Therapeutic Area, Sanofi, Inc., Framingham, MA 01701 (1)
St. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, New York, USA. (1)
Department of Pathology, The University of Michigan Medical School, Ann Arbor, Michigan, USA (1)
Head, Department of Biotechnology, University of Kashmir (1)
Department of Bioengineering Center for Autodigestion Innovation University of California at San Diego La Jolla, California USA (1)
School of Life Sciences (1)
Biochemistry (1)
Division of Endocrinology, Diabetes, and Metabolism, Beth Israel Deaconess Medical Center Harvard Medical School Broad Institute of Harvard and MIT (1)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Parkville, Victoria 3010, Australia. (1)