Ahmed S S - OmicsDI

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Unknown (7996)
Proteomics (119)
Transcriptomics (115)
Genomics (71)
Metabolomics (16)
Models (6)
Other (1)

Organisms

Homo sapiens (125)
Schizosaccharomyces pombe (93)
Human immunodeficiency virus 1 (93)
Oryza sativa Indica Group (93)
Sinorhizobium meliloti BL225C (93)
Sus scrofa domesticus (93)
Ostreococcus tauri (93)
Saccharomyces cerevisiae (93)
Vitis vinifera (93)
Mus musculus (29)
Arabidopsis thaliana (21)
Rattus norvegicus (4)
Bos taurus (3)
Caenorhabditis elegans (3)
Haemophilus influenzae (2)
Gallus gallus (2)
Saccharomyces cerevisiae (2)
Severe acute respiratory syndrome-related coronavirus (1)
Escherichia coli (1)
Arabidopsis lyrata subsp. lyrata (1)
Pristionchus pacificus (1)
Cupriavidus metallidurans CH34 (1)
Francisella tularensis subsp. novicida (1)
Ovis aries (1)
Drosophila melanogaster (1)
Haemaphysalis doenitzi (1)
Staphylococcus epidermidis (1)
Staphylococcus capitis (1)
Staphylococcus (1)
Staphylococcus aureus (1)

Organisms

Homo sapiens (1)

Repository

biostudies-arrayexpress (122)
pride (93)
EGA (63)
MassIVE (15)
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BioModels (6)
PanoramaPublic (6)
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Tissue

Cell culture (19)
Brain (8)
Fibroblast (6)
Blood plasma (6)
Retina (5)
Whole body (5)
Retinal cell (4)
Permanent cell line cell (4)
Urine (4)
Liver (4)
Blood (3)
Blood cell (3)
Skin (3)
Pancreas (3)
Epithelial cell (3)
Primary cell (2)
Bone marrow (2)
Cerebrospinal fluid (2)
Stem cell (2)
Kidney (2)
Others (1)
Corneal endothelial cell (1)
Layer of hippocampus (1)
Blood-lymph (1)
Bile duct (1)
Umbilical cord (1)
Tear (1)
Oral squamous cell carcinoma cell (1)
Pancreatic ductal carcinoma cell (1)
Endothelial cell (1)

Disease

Retinal degeneration (4)
Disease free (4)
Brain cancer (3)
Normal (2)
Alzheimer's disease (2)
Cervix carcinoma (2)
Breast cancer (2)
Acute leukemia (2)
Benign glioma (1)
Cocaine addiction (1)
Hepatocellular carcinoma (1)
Prostate cancer (1)
Not Available (1)
Polycystic kidney disease (1)
Gastroesophageal cancer (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Uveal melanoma (1)
Peripheral primitive neuroectodermal tumor (1)
Psoriasis (1)
Fibrosarcoma (1)
Ovarian cyst (1)
Head and neck cancer (1)
Pancreatitis (1)
Neurological dysfunction (1)
Adenocarcinoma (1)
Malignant mesothelioma (1)
Chronic bronchitis (1)
Stomach cancer (1)

Technology Type

Mass Spectrometry (93)
Shotgun proteomics (39)
Bottom-up proteomics (25)
Data-dependent acquisition (12)
Mass spectrometry (11)
Data-independent acquisition (8)
Gel-based experiment (7)
SWATH MS (7)
Affinity purification coupled with mass spectrometry proteomics (4)
Mass spectrometry assay (2)
Top-down proteomics (2)
OXFORD_NANOPORE, MinION (1)
ILLUMINA, Illumina HiSeq 4000, Illumina HiSeq 2500 (1)
Complete Genomics (COMPLETE_GENOMICS) (1)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy assay (1)
SomaScan affinity proteomics (1)
Affinity proteomics (1)
Immunopeptidomics (1)
All-ion fragmentation (1)
HDMSE (1)

Instrument Platform

Q Exactive (6)
Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (5)
Illumina HiSeq 4000 (4)
TripleTOF 5600+ (4)
Orbitrap Fusion Lumos (4)
Liquid Chromatography MS - positive - hilic (4)
Liquid Chromatography MS - negative - hilic (3)
Microcentrifuge (2)
ScanArray scanning hardware (2)
Ion Torrent S5 XL (2)
Illumina NovaSeq 6000 (2)
Non (1)
Axon Instruments GenePix 4000B scanner (1)
Perkin Elmer, USA (1)
Agilent Technologies Microarray Scanner (1)
None (1)
Illumina (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
Instrument (1)
MALDI Synapt G2-S HDMS (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap Velos Pro (1)
Orbitrap Fusion ETD (1)
Q Exactive HF-X (1)
Orbitrap Fusion (1)
Xevo TQ-S (Waters) (1)
Liquid Chromatography MS - alternating (1)
MS Imaging - (1)

Publication Date

2024 (36)
2011 (27)
2022 (19)
2021 (19)
2013 (18)
2026 (18)
2015 (15)
2012 (15)
2016 (14)
2025 (14)
2023 (11)
2010 (11)
2020 (8)
2018 (8)
2014 (7)
2019 (5)
2008 (4)
2017 (4)
2007 (3)
2006 (3)

UNIPROT ID/AC

Q9UQQ1 (1)
Q9UHI7 (1)
Q96S37 (1)
Q8N695 (1)
P01589 (1)
O75631 (1)
O00322 (1)
O75074 (1)
A6NI73 (1)
Q496F6 (1)
P55017 (1)
M0QZL2 (1)
Q6P531 (1)
Q6UXB4 (1)
O95460 (1)
Q969E1 (1)
Q12794 (1)
O43511 (1)
Q16661 (1)
Q99706 (1)
P20333 (1)
Q13477 (1)
Q86UP6 (1)
Q16820 (1)
P98073 (1)
P16233 (1)
P04118 (1)
Q96FN5 (1)
Q8TDQ1 (1)
Q53RD9 (1)

ENSEMBL ID

ENSG00000229353 (1)
ENSG00000170477 (1)

CHEBI ID

CHEBI:28044 (7)
CHEBI:18237 (7)
CHEBI:29016 (7)
CHEBI:27570 (6)
CHEBI:28300 (6)
CHEBI:22660 (6)
CHEBI:16811 (6)
CHEBI:30769 (6)
CHEBI:27266 (5)
CHEBI:24898 (5)
CHEBI:26271 (5)
CHEBI:25094 (5)
CHEBI:22653 (5)
CHEBI:18186 (5)
CHEBI:17750 (5)
CHEBI:16742 (5)
CHEBI:30915 (5)
CHEBI:25017 (5)
CHEBI:17822 (5)
CHEBI:17568 (5)
CHEBI:16450 (5)
CHEBI:15354 (5)
CHEBI:16235 (5)
CHEBI:17775 (5)
CHEBI:16708 (5)
CHEBI:16530 (4)
CHEBI:16449 (4)
CHEBI:26986 (4)
CHEBI:71417 (1)
CHEBI:28445 (1)

Metabolite Name

Myo-inositol (3)
Methionine (3)
Uridine (3)
Orotate (3)
Xanthosine (3)
Xanthine (3)
Hypoxanthine (3)
Guanine (3)
Allantoin (3)
Glycerate (3)
Fumarate (3)
Succinate (3)
Lactate (3)
Valine (3)
Leucine (3)
Isoleucine (3)
Proline (3)
Histidine (3)
Glutamine (3)
Glutamate (3)
Citrulline (3)
Alanine (3)
Lysine (3)
Threonine (3)
Aspartate (3)
Tyrosine (3)
Phenylalanine (3)
Cysteine (3)
Glycine (3)
Taurine (3)

First Public Date

2018 (1)
2017 (1)

Modelling Approach

Computational model (2)
Ordinary differential equation model (2)
Mathematical model (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Center for Translational Vision Research, Department of Ophthalmology, Gavin Herbert Eye Institute, University of California, Irvine, Irvine, CA, 92697, USA; Department of Physiology and Biophysics, Department of Chemistry, Department of Molecular Biology and Biochemistry; University of California, Irvine, Irvine, CA, 92697, USA (3)
Genomics Research Center, Academia Sinica, Taipei, Taiwan (3)
Professor Louisiana State University Department of Biological Sciences (2)
Boston Children's Hospital and Harvard Medical School (2)
CRUK Beatson Institute, Switchback Road, Glasgow G61 1BD, UK. (2)
Max Planck Unit for the Science of Pathogens Charitéplatz 1,D-10117 Berlin, Germany (2)
Proteomics and Metabolomics research program, Basic research department, Children’s Cancer Hospital 57357, Cairo, Egypt (1)
Protein Analysis and Proteomics Platform The Francis Crick Institute London NW1 1AT UK (1)
Boston Childrens Hospital Steen Lab Department of Pathology Boston, MA, USA (1)
Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA, 94720, USA (1)
School of Medicine, University of St Andrews, St Andrews, KY16 9TF, United Kingdom. (1)
Department of Biochemistry and Molecular Biology, Drexel University College of Medicine. Translational Cellular Oncology Program, Sidney Kimmel Cancer Center, Thomas Jefferson University (1)
School of Biosciences and Medicine, the University of Surrey, Guildford GU2 7XH, Surrey, UK Division of Immunology, Immunity to Infection and Respiratory Medicine, School of Biological Sciences, Manchester Institute of Biotechnology, Manchester Academic Health Sciences Centre, University of Manchester, Manchester M1 7DN, Greater Manchester, UK (1)
Microbiology Department, The Ohio State University, United States of America (1)
Center for Reproductive Evolution, Department of Biology, Syracuse University, United States of America (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Queensland Brain Institute, Univerisity of Queensland (1)
Department of Entomology, Cornell University, USA (1)
Division of Molecular and Cellular Function School of Biological Sciences Faculty of Biology Medicine and Health (1)
Department of Biochemistry and Molecular Biology and The Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne, Parkville, Victoria, 3010, Australia. (1)
Neurosurgeon & Senior Scientist Developmental and Stem Cell Biology, The Hospital for Sick Children, Canada (1)
Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, The Netherlands (1)
Head of Core Facility, Central European Institute of Technology, Masaryk University, Brno, Czech Republic. (1)
INSERM U1068/UMR7258 CNRS - Cancer Research Center of Marseille "Pancreatic Cancer" Team Group leader of the "Microenvironment and inter-cellular dialogue" Parc Scientifique de Luminy, 163 avenue de Luminy, case 915, 13288 Marseille Cedex 9 France (1)
Department of Pathology and Cell Biology, Columbia University Medical Center, New York, NY, USA (1)
Ottawa Institute of Systems Biology, University of Ottawa, Ottawa, ON, Canada (1)
Max Planck Unit for the Science of Pathogens, D-10117 Berlin, Germany Institute for Biology, Humboldt University, D-10115 Berlin, Germany (1)
Laboratory of Plant Molecular Physiology, Centre of Biotechnology of Borj Cedria, P.O. Box 901, 2050 Hammam‑Lif, Tunisia. (1)
Head of TIssue Engineering Group at the Departmnet of Dentistry (1)

IsPrivate

False (6)

Submitter Keywords

Ersilia (2)
Machine Learning Model (2)

Modification

42.010565 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (64)
ChIP-chip by tiling array (22)
RNA-seq of coding RNA (12)
Methylation profiling by high throughput sequencing (6)
Methylation profiling by array (4)
RNA-seq of non coding RNA (4)
Cell line - High-throughput sequencing (2)
Other (2)
Unknown experiment type (1)
Animal - High-throughput sequencing (1)
Antigen profiling (1)
Comparative genomic hybridization by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of total RNA (1)

Release Date

2022 (1151)
2025 (1131)
2023 (1038)
2024 (972)
2021 (947)
2020 (602)
2019 (416)
2018 (375)
2017 (271)
2016 (210)
2015 (209)
2026 (168)
2014 (153)
2013 (106)
2011 (95)
2012 (84)
2010 (65)
2009 (36)
2008 (28)
2006 (21)
2007 (17)
2005 (8)
2004 (6)
2003 (3)
2002 (2)
2001 (2)
1999 (2)

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Skin cancer-associated S. aureus downregulates DNA repair mechanisms, and promotes oxidative stress and DNA damage in human keratinocytes

Actinic keratoses (AK) are premalignant lesions common on photo-damaged skin that, over time, can progress to squamous cell carcinoma (SCC). A high bacterial load of Staphylococcus aureus is associated with AK and SCC but it is unknown whether this has a direct impact on skin cancer development. To ...

ORGANISM(S): Staphylococcus Capitis Staphylococcus Aureus Staphylococcus Epidermidis Staphylococcus

2022-05-17 | PXD031676 | panorama

Postoperative Complications in the Ahmed Baerveldt Comparison Study During Five Years of Follow-up.

Not available

S-EPMC4901387 | biostudies-literature

Ahmed glaucoma valve implant for refractory glaucoma in children: A systematic review and meta-analysis.

Not available

S-EPMC11752183 | biostudies-literature

Meta-analysis of Molteno glaucoma implants and Ahmed glaucoma valves: insights into efficacy and safety for complex glaucoma.

Not available

S-EPMC11182311 | biostudies-literature

S-layers at second glance? Altiarchaeal grappling hooks (hami) resemble archaeal S-layer proteins in structure and sequence.

Not available

S-EPMC4460559 | biostudies-literature

Failed Ahmed glaucoma valves: trabeculectomy versus repeat shunt surgery.

Not available

S-EPMC11342670 | biostudies-literature

Urine Proteomics for Noninvasive Monitoring of Biomarkers in Bronchopulmonary Dysplasia

Current techniques to diagnose and/or monitor critically ill neonates with bronchopulmonary dysplasia (BPD) require invasive sampling of body fluids, which can affect the health status of these frail neonate. We tested our hypotheses 1) it is feasible to use early urine samples from extremely low g...

ORGANISM(S): Homo sapiens (Human)

2022-04-04 | PXD028895 | Pride

Horizontal Transfer of Bacteriocin Biosynthesis Genes Requires Metabolic Adaptation To Improve Compound Production and Cellular Fitness

Biosynthetic gene clusters (BGCs) encoding the production of bacteriocins are widespread among bacterial isolates and are important genetic determinants of competitive fitness within a given habitat. Staphylococci produce a tremendous diversity of compounds, and the corresponding BGCs are frequen...

2022-11-09 | MTBLS5196 | MetaboLights

Is Ahmed Glaucoma Valve Consistent in Performance?

Not available

S-EPMC6016431 | biostudies-literature

Hematological, Biochemical Properties, and Clinical Correlates of Hemoglobin S Variant Disorder: A New Insight Into Sickle Cell Trait.

Not available

S-EPMC9275442 | biostudies-literature

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