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TranscriptomicsTranscriptional profiling by array to investigate the effect of interfacial stress on rat alveolar type II cell signalling and gene expression (conventional air-liquid interface)
Many epithelia have contact with air-liquid interfaces. This applies particularly to the lung, where one of the epithelial cell types (the surfactant secreting alveolar type II [AT II] cells) even project into the air. This specific environment may be of considerable physiological relevance; however...
ORGANISM(S): Rattus norvegicus 
2012-07-20 | E-MEXP-3363 | biostudies-arrayexpress
GenomicsEffect of air-liquid interface stimulation on gene expression during keratinocyte differentiation by three-dimensional culture
Effect of air-liquid interface stimulation on gene expression during keratinocyte differentiation by three-dimensional culture
PRJNA847243 | ENA
TranscriptomicsEffect of air-liquid interface stimulation on gene expression during keratinocyte differentiation by three-dimensional culture
To investigate how air-liquid interface stimulation induces epidermal differentiation, we carried out RNA-seq on three-dimensional culture with and without air exposure.
ORGANISM(S): Homo sapiens 
2022-12-08 | GSE205727 | GEO
GenomicsTranscriptomic Analysis of Air–Liquid Interface Culture in Human Lung Organoids Reveals Regulators of Epithelial Differentiation
Transcriptomic Analysis of Air–Liquid Interface Culture in Human Lung Organoids Reveals Regulators of Epithelial Differentiation
PRJNA1178711 | ENA
TranscriptomicsGene expression profile of the SV40-immortalized human corneal epithelial cells
Microarray was used to study global gene expression of a cell culture model based on SV40-immortalized human corneal epithelial (iHCE) cells. The gene expression profile of the cell line was compared to the normal human corneal epithelium. Affymetrix HG-U133A GeneChips® were used for microarray exp...
ORGANISM(S): Homo sapiens 
2010-07-29 | E-GEOD-22539 | biostudies-arrayexpress
GenomicsNasal epithelial cells of PCD and non-PCD patients grown at air-liquid interface for RNAseq analysis
Raw RNAseq data files of genetically unsolved PCD patients used for transcriptomic analysis aming to uplift the diagnostic rate. The non-PCD patients were used as a clinical comparator to the PCD patients. Majority of the nasal epithelial cells used for RNAseq were cultured at an air-liquid interfac...
EGAS00001006632 | EGA
TranscriptomicsRNA-seq of air-liquid interface co-cultures of A549 and THP-1 cells exposed to Saharan dust or DQ12 against unexposed controls
Although desert dust is known to cause increased respiratory morbidity and mortality, the underlying biological pathways remain unclear. We used RNA-seq on an advanced human alveolar in vitro model to find yet unidentified genes dysregulated by Saharan dust exposure. For comparison, DQ12 quartz dust...
ORGANISM(S): Homo sapiens 
2024-03-15 | E-MTAB-13372 | biostudies-arrayexpress
GenomicsSingle-cell RNA-seq of air-liquid interface bronchioalveolar cells
Single-cell RNA-seq of air-liquid interface bronchioalveolar cells
PRJNA679844 | ENA
TranscriptomicsTranscriptomic Analysis of Air–Liquid Interface Culture in Human Lung Organoids Reveals Regulators of Epithelial Differentiation
We comprehensively analyzed differentiation effects of the air–liquid interface (ALI) culture method on adult tissue-derived human lung organoids and examined the similarity with in vivo human airway epithelium compared to submerged cultures using single-cell RNA sequencing.
ORGANISM(S): Homo sapiens 
2024-12-02 | GSE280502 | GEO
GenomicsscRNA-seq of canalicular stage human fetal lung cultured under air-liquid interface
scRNA-seq of canalicular stage human fetal lung cultured under air-liquid interface
PRJEB62498 | ENA
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