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Unknown
(118621)
Transcriptomics
(18970)
Genomics
(16428)
Proteomics
(11630)
Metabolomics
(1212)
Models
(538)
Other
(518)
Genomic
(163)
Methylation profiling
(81)
Clinical
(76)
Multiomics
(47)
Organisms
Homo sapiens
(7714)
Mus musculus
(5154)
Arabidopsis thaliana
(1534)
Saccharomyces cerevisiae
(803)
Rattus norvegicus
(453)
Escherichia coli
(145)
Bacillus subtilis
(51)
Trypanosoma brucei
(32)
cellular organisms
(28)
Xenopus laevis
(25)
Nicotiana tabacum
(19)
Halobacterium salinarum
(18)
Viridiplantae
(11)
Oryctolagus cuniculus
(11)
Mammalia
(7)
Neurospora crassa
(7)
Cricetulus griseus
(7)
Eukaryota
(4)
Rattus
(3)
Cavia porcellus
(3)
Mus sp.
(2)
Cancer
(1)
Xenopus
(1)
Rhodococcus ruber
(1)
Ostreococcus tauri
(1)
Leishmania
(1)
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(1)
Staphylococcus epidermidis ATCC 12228
(1)
Rodentia
(1)
Komagataella pastoris
(1)
Organisms
Homo sapiens
(2530)
Mus musculus
(2096)
Arabidopsis thaliana
(407)
Saccharomyces cerevisiae
(233)
Drosophila melanogaster
(211)
Rattus norvegicus
(141)
Caenorhabditis elegans
(100)
Danio rerio
(98)
Oryza sativa
(58)
Escherichia coli
(52)
Zea mays
(49)
Bos taurus
(46)
Halobacterium salinarum NRC-1
(40)
soil metagenome
(34)
Sus scrofa
(32)
Solanum lycopersicum
(29)
Schizosaccharomyces pombe
(26)
Plasmodium falciparum
(25)
Glycine max
(24)
Pseudomonas aeruginosa
(23)
Gallus gallus
(22)
Macaca mulatta
(21)
Staphylococcus aureus
(19)
Bifidobacterium breve UCC2003
(18)
marine metagenome
(18)
Mycobacterium tuberculosis
(18)
Hordeum vulgare
(17)
Medicago truncatula
(17)
Oncorhynchus mykiss
(17)
human gut metagenome
(17)
Repository
biostudies-arrayexpress
(18554)
ENA
(13012)
pride
(10113)
geo
(3349)
MetaboLights
(1082)
MassIVE
(974)
EGA
(760)
BioModels
(432)
GPMDB
(362)
PeptideAtlas
(280)
dbGaP
(163)
GNPS
(105)
jPOST
(95)
iProX
(77)
PMR
(64)
FAIRDOMHub
(36)
PAXDB
(36)
NODE
(34)
PanoramaPublic
(30)
MetabolomicsWorkbench
(21)
EVA
(13)
LINCS
(8)
Cell Collective
(6)
ExpressionAtlas
(1)
Tissue
Liver
(292)
Blood
(202)
Lung
(160)
Others
(104)
Embryo
(102)
Brain
(7)
Cell line
(7)
Breast
(5)
Blood
(4)
Lung
(4)
Spleen
(2)
Mesenteric lymph
(1)
Myotubes
(1)
Date palm fruit
(1)
Corpus Luteum
(1)
Cells
(1)
Glioma cells
(1)
Unspecified
(1)
Epithelial cells
(1)
Plant
(1)
Leaf
(1)
Muscle
(1)
Bacterial cells
(1)
Feces
(1)
Urine
(1)
Fetal liver
(1)
Hematocyte
(1)
Rectum
(1)
Splenic B cells
(1)
Yolk sac
(1)
Disease
Breast cancer
(175)
Normal
(90)
Alzheimer's disease
(58)
Type 2 diabetes mellitus
(45)
Parkinson's disease
(42)
Lung cancer
(37)
Glioblastoma
(26)
Amyotrophic lateral sclerosis
(25)
Neuroblastoma
(22)
Pancreatic cancer
(21)
Multiple myeloma
(11)
Acute myeloid leukemia
(7)
Cancer
(6)
Chronic lymphocytic leukemia
(5)
Breast carcinoma
(4)
Colorectal cancer
(3)
Osteosarcoma
(3)
Prostate cancer
(3)
Adenocarcinoma
(3)
B-cell chronic lymphocytic leukemia
(2)
ACUTE MYELOID LEUKEMIA
(2)
Not applicable
(2)
Asthma
(2)
Apparently healthy
(2)
Inflammatory bowel disease
(1)
Type 1 diabetes mellitus
(1)
Tuberculosis
(1)
Leishmaniasis
(1)
Hodgkin's lymphoma
(1)
Mature T-cell and NK-cell lymphoma
(1)
Technology Type
Illumina HiSeq 2000
(21)
Illumina HiSeq 2500
(5)
Illumina HiSeq 2000, ILLUMINA
(5)
Illumina Genome Analyzer II, Illumina HiSeq 2000
(4)
Illumina HiSeq 4000, ILLUMINA
(3)
ILLUMINA, Illumina HiSeq 2000
(3)
Illumina MiSeq
(3)
Illumina Genome Analyzer II
(3)
NextSeq 500, Illumina HiSeq 4000, ILLUMINA
(2)
Illumina HiSeq 2500, ILLUMINA
(2)
ILLUMINA, Illumina HiSeq 2500
(2)
Illumina Cardio-MetaboChip
(1)
Illumina HiSeq 2500, ILLUMINA, Affymetrix GeneChip Scanner 3000 7g
(1)
Illumina HT12.4
(1)
ION_TORRENT, Ion Torrent Proton
(1)
Illumina HiSeq 2000, HiSeq X Ten, Illumina HiSeq 2500, ILLUMINA
(1)
Illumina HiSeq 3000, ILLUMINA
(1)
Illumina OncoArray
(1)
Illumina HiSeq 2500, Illumina HiSeq 4000, ILLUMINA, NextSeq 500
(1)
ILLUMINA, NextSeq 500
(1)
Illumina 450K
(1)
Illumina Human Core Exome 12v1.1
(1)
Illumina ImmunoChip
(1)
HiSeq X Ten, ILLUMINA
(1)
Illumina ChIP-Sequencing, Illumina MBD-Sequencing, Illumina beadarray, Illumina HiSeq 2500, Illumina MiSeq, Illumina Bisulfite-Sequencing
(1)
ILLUMINA, Illumina HiSeq 2500, Illumina HiSeq 2000
(1)
ILLUMINA, Illumina MiSeq
(1)
Illumina HiSeq 2000, Affymetrix SNP 6.0
(1)
Illumina HiSeq 2000, Affymetrics_SNP_6.0-, Illumina Genome Analyzer IIx
(1)
Illumina Human Custom 1, Illumina Human-Ref-8 v3 beadchip, 2M and Human 610 Quad Custom arrays
(1)
Instrument Platform
NextSeq 500
(471)
Illumina NovaSeq 6000
(463)
Illumina HiSeq 2500
(399)
Illumina HiSeq 2000
(350)
Illumina HiSeq 4000
(263)
Illumina MiSeq
(114)
NextSeq 550
(86)
NextSeq 2000
(76)
Illumina Genome Analyzer IIx
(55)
Illumina HiSeq 1500
(54)
Illumina Genome Analyzer II
(46)
Illumina NovaSeq X
(38)
Scanning hardware
(32)
HiSeq X Ten
(31)
Illumina HiSeq 3000
(26)
BGISEQ-500
(25)
Agilent 2100 Bioanalyzer
(19)
Axon GenePix 4000B scanning hardware
(17)
GenePix 4000B [Axon Instruments]
(16)
Ion Torrent Proton
(16)
Illumina HiSeq 1000
(16)
AB SOLiD 4 System
(15)
DNBSEQ-G400
(15)
Axon- GenePix4000B
(14)
NA
(14)
GenePix 4000A [Axon Instruments]
(13)
418 [Affymetrix]
(12)
MinION
(12)
DNBSEQ-T7
(11)
Agilent G2505B scanner
(8)
Publication Date
2014
(2481)
2013
(2481)
2010
(2379)
2015
(2209)
2025
(2154)
2012
(2102)
2022
(2033)
2024
(2010)
2011
(1958)
2023
(1942)
2021
(1917)
2016
(1736)
2020
(1607)
2019
(1299)
2026
(1282)
2018
(1176)
2008
(972)
2017
(942)
2009
(866)
2007
(465)
2005
(438)
2006
(271)
2004
(145)
2002
(35)
2003
(32)
2001
(5)
2027
(1)
UNIPROT ID/AC
P04075
(225)
Q9BQG2
(66)
B3KXN9
(66)
Q53HM1
(66)
Q86SK9
(66)
E9KL42
(66)
Q3I5F7
(66)
P33897
(66)
Q99884
(66)
A8MU28
(66)
P35219
(66)
Q5FC00
(66)
Q15274
(66)
Q9NX14
(66)
Q9Y345
(66)
Q86YT5
(66)
Q53H96
(66)
Q9NWU1
(66)
Q96C36
(66)
Q9NRX3
(66)
O75610
(66)
Q6UWQ5
(66)
Q96KJ9
(66)
Q9UEF7
(66)
Q8TF08
(66)
Q7Z4L0
(66)
Q7GXZ8
(66)
Q7GXY8
(66)
Q9H0N5
(66)
Q6YFQ2
(66)
ENSEMBL ID
ENSG00000170477
(133)
ENSG00000229353
(62)
ENSG00000147251
(51)
ENSG00000247315
(29)
ENSDARG00000000103
(17)
ENSDARG00000001431
(17)
ENSDARG00000001915
(17)
ENSDARG00000001950
(17)
ENSDARG00000001993
(17)
ENSDARG00000002480
(17)
ENSDARG00000005039
(17)
ENSDARG00000005560
(17)
ENSDARG00000005791
(17)
ENSDARG00000006399
(17)
ENSDARG00000007219
(17)
ENSDARG00000009285
(17)
ENSDARG00000009484
(17)
ENSDARG00000010149
(17)
ENSDARG00000013078
(17)
ENSDARG00000016301
(17)
ENSDARG00000016393
(17)
ENSDARG00000017014
(17)
ENSDARG00000017624
(17)
ENSDARG00000018404
(17)
ENSDARG00000021124
(17)
ENSDARG00000022767
(17)
ENST00000261769
(1)
ENST00000227507
(1)
ENST00000242261
(1)
ENST00000263341
(1)
CHEBI ID
CHEBI:15428
(324)
CHEBI:17368
(289)
CHEBI:16704
(286)
CHEBI:17568
(284)
CHEBI:15354
(272)
CHEBI:16708
(270)
CHEBI:17268
(266)
CHEBI:17754
(261)
CHEBI:16235
(226)
CHEBI:16450
(197)
CHEBI:15698
(194)
CHEBI:16680
(185)
CHEBI:17172
(185)
CHEBI:4167
(181)
CHEBI:17151
(179)
CHEBI:16526
(150)
CHEBI:15379
(146)
CHEBI:15343
(134)
CHEBI:16240
(133)
CHEBI:15377
(133)
CHEBI:16842
(132)
CHEBI:18421
(131)
CHEBI:18191
(131)
CHEBI:17544
(131)
CHEBI:17378
(131)
CHEBI:16189
(131)
CHEBI:16016
(131)
CHEBI:15414
(131)
CHEBI:11851
(130)
CHEBI:16424
(130)
Metabolite Name
Hypoxanthine
(164)
Creatine
(154)
Uracil
(142)
Taurine
(142)
L-Phenylalanine
(138)
Uridine
(137)
Creatinine
(135)
Choline
(131)
Adenine
(131)
Inosine
(130)
Adenosine
(127)
L-Tyrosine
(126)
Glycine
(120)
Xanthine
(120)
Citric acid
(118)
L-Glutamine
(112)
Thymine
(110)
L-Valine
(109)
Guanosine
(108)
Ornithine
(106)
L-Histidine
(106)
Guanine
(106)
Cytosine
(106)
L-Threonine
(105)
L-Proline
(104)
Succinic acid
(104)
Valine
(103)
Betaine
(103)
Cytidine
(102)
Azelaic acid
(100)
First Public Date
2014
(2298)
2025
(1650)
2024
(1131)
2023
(987)
2026
(893)
2022
(864)
2021
(838)
2020
(832)
2019
(742)
2017
(645)
2018
(641)
2013
(571)
2015
(466)
2016
(411)
2012
(25)
2011
(10)
2010
(8)
Modelling Approach
Ordinary differential equation model
(228)
Constraint-based model
(61)
Other
(7)
Differential equation model
(6)
Boolean model
(3)
Metabolic network
(3)
Machine learning
(2)
Mathematical model
(2)
Logical model
(2)
Deep learning
(1)
Computational model
(1)
Differential algebraic equation model
(1)
Pharmacodynamics model
(1)
Delayed differential equation model
(1)
Stochastic differential equation model
(1)
Study status
Completed
(23)
Not provided
(17)
Recruiting
(13)
Not yet recruiting
(11)
Ongoing
(4)
Terminated
(3)
Active, not recruiting
(3)
Enrolling by invitation
(2)
Lab affiliation
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA
(77)
Analytics Core Facility Essen (ACE), Chemische Biologie, Universität Duisburg-Essen, ZMB, Germany
(48)
University of Edinburgh
(34)
EDyP
(31)
Basic Immune System of Plants / Protein Mass Spectrometry Max Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany
(28)
Head of the Curie Institute Mass Spectrometry Platform
(28)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark
(26)
Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany
(25)
ETH Zurich, Institute of Molecular Systems Biology, Zurich, Switzerland
(25)
North Carolina State University
(24)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany
(21)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic
(21)
European Molecular Biology Laboratory
(20)
Institute of Molecular Biology (IMB)
(19)
Mendel University in Brno
(16)
University of Victoria
(16)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom
(15)
ETH Zurich, Institute of Molecular Systems Biology
(15)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany
(13)
Head of Proteomics
(13)
The University of Melbourne
(13)
University of Vienna
(13)
DZNE Munich, Neuroproteomics, Feodor-Lynen Str. 17, 81377 Munich, Germany
(12)
Cellzome
(11)
DZNE Munich, Neuroproteomics, Feodor-Lynen-Str. 17, 81377 München, Germany
(11)
Ghent University, Department of Plant Biotechnology and Bioinformatics, Technologiepark 71, 9052 Ghent, Belgium VIB Center for Plant Systems Biology, Technologiepark 71, 9052 Ghent, Belgium
(11)
IBCH RAS
(11)
Professor of Genomic Evolution, School of Medicine, Conway Institute of Biomolecular and Biomedical Research, University College Dublin Belfield Dublin 4
(11)
Universität Greifswald Institut für Pharmazie, AG Pharmazeutische Biotechnologie Greifswald, Germany
(11)
Department of Biological Sciences, University of Alberta
(10)
Tags
xref:PubMed:35732736
(686)
xref:PubMed:34387940
(686)
pathogen
(534)
pathogen:bacterium
(391)
xref:PubMed:33911273
(73)
pathogen:protozoan
(55)
pathogen:fungus
(53)
xref:PubMed:15656970
(52)
xref:PubMed:18160043
(30)
pathogen:virus
(30)
xref:PubMed:38092908
(13)
xref:PubMed:41890112
(13)
xref:PubMed:18081424
(11)
covid19
(11)
xref:PubMed:32961143
(10)
xref:PubMed:17988385
(10)
xref:PubMed:38355802
(9)
xref:PubMed:29166127
(9)
xref:PubMed:34601489
(8)
xref:PubMed:19744757
(8)
xref:PubMed:33106934
(8)
xref:PubMed:12501429
(8)
xref:PubMed:17675389
(8)
xref:PubMed:12445333
(7)
xref:PubMed:25689317
(7)
xref:PubMed:19417177
(7)
xref:PubMed:29954933
(7)
xref:PubMed:34551299
(6)
xref:PubMed:39386475
(6)
xref:PubMed:40595617
(6)
Keyword
Oxaliplatin
(6)
Fluorouracil
(5)
Anastomotic leakage
(4)
Colonoscopy
(4)
Bevacizumab
(4)
Folic Acid
(3)
Irinotecan
(3)
Leucovorin
(3)
Levoleucovorin
(3)
Pembrolizumab
(2)
Panitumumab
(2)
Capecitabine
(2)
Cetuximab
(2)
Yoga, Meditation, Colorectal Cancer, sleep, Quality of Life
(1)
ZALTRAP - 25 MG/ML - CONCENTRATO PER SOLUZIONE PER INFUSIONE - USO ENDOVENOSO - FLACONE (VETRO) - 100 MG/4 ML - 1 FLACONE
(1)
Fluorescence angiography
(1)
Colic surgery
(1)
Rectal surgery
(1)
Flagyl
(1)
Omeprazol EFG
(1)
Amoxicilina EFG
(1)
Claritromicina EFG
(1)
Cabazitaxel
(1)
PR1
(1)
Biomarkers (BRAF, IGF1P/MMp7,PI3K-PTEN)
(1)
XELODA 150 mg comprimidos recubiertos con película
(1)
XELODA 500 mg comprimidos recubiertos con película
(1)
AVASTIN 25 mg/ml concentrado para solución para perfusión
(1)
NAROPIN POLYAMP 75 mg solución inyectable
(1)
NAROPIN POLYBAG 200 mg solución para perfusión
(1)
IsPrivate
False
(432)
Model Flag
Non Kinetic
(111)
Non Miriam
(7)
Submitter Keywords
FROG
(19)
Immuno-oncology
(13)
Not Peer Reviewed
(5)
FAIR-AIML
(3)
Machine Learning Model
(3)
Ersilia
(2)
Classification
bacteria
(391)
protozoa
(55)
fungi
(53)
viruses
(30)
helminths
(5)
Modification
57.021464
(20)
15.994915
(19)
Not available
(18)
4-tetrahydrothiazine-3-carboxylic acid
(17)
4x(15)N labeled L-arginine
(14)
2x(15)N labeled L-lysine
(12)
N6
(12)
42.010565
(9)
N6-dimethyl-L-lysine
(9)
-17.026549
(8)
79.966331
(6)
-18.010565
(5)
4x(2)H labeled dimethylated residue
(5)
4x(2)H labeled dimethylated L-lysine
(4)
3x(2)H labeled N6-acetyl-L-lysine
(3)
58.005479
(3)
+3amu)
(2)
0.984016
(2)
4
(2)
4'-dihydroxyphenylalanine
(2)
45.029395
(2)
6.020129
(2)
0.9840160012245178
(1)
10.008269
(1)
144.102062
(1)
15.977156
(1)
15.994915008544922
(1)
1x(15)N labeled L-valine
(1)
3-dipalmitoyl-glycerol)cysteine
(1)
4-dinitrophenyl modified residue
(1)
Study type
Transcription profiling by array
(9211)
RNA-seq of coding RNA
(2845)
ChIP-seq
(1721)
Comparative genomic hybridization by array
(568)
RNA-seq of non coding RNA
(451)
ChIP-chip by tiling array
(440)
Other
(399)
Unknown experiment type
(333)
Methylation profiling by high throughput sequencing
(290)
RNA-seq of coding RNA from single cells
(286)
Methylation profiling by array
(283)
ChIP-chip by array
(202)
Transcription profiling by tiling array
(193)
DNA-seq
(161)
RNA-seq of total RNA
(102)
ATAC-seq
(92)
MicroRNA profiling by array
(85)
Cell line - High-throughput sequencing
(80)
Genotyping by array
(73)
Genotyping by high throughput sequencing
(63)
High-throughput sequencing
(50)
Animal - High-throughput sequencing
(46)
Transcription profiling by SAGE
(39)
Proteomic profiling by array
(36)
Transcription profiling by RT-PCR
(32)
Plant - High-throughput sequencing
(30)
CLIP-seq
(29)
Hi-C
(23)
Human - High-throughput sequencing
(22)
RIP-seq
(21)
Release Date
2022
(15035)
2023
(13580)
2021
(12918)
2025
(12845)
2024
(11166)
2020
(9825)
2019
(7668)
2018
(6903)
2016
(6163)
2015
(5795)
2017
(5719)
2014
(5423)
2013
(4535)
2012
(3827)
2010
(3740)
2011
(3559)
2026
(1974)
2009
(1878)
2008
(1659)
2007
(912)
2006
(555)
2005
(468)
2004
(289)
2003
(168)
2002
(143)
2001
(124)
2000
(102)
1999
(80)
1998
(66)
1997
(34)
Location
Spain
(12)
France
(11)
China
(7)
Italy
(7)
Australia
(7)
United Kingdom
(7)
Netherlands
(5)
India
(3)
Germany
(3)
United States
(3)
Malaysia
(2)
Chile
(2)
Denmark
(2)
Brazil
(2)
Canada
(2)
Austria
(2)
Iraq
(1)
Iran
(1)
Slovenia
(1)
Taiwan
(1)
Lithuania
(1)
Estonia
(1)
Philippines
(1)
North Korea
(1)
Croatia
(1)
Romania
(1)
Peru
(1)
Mexico
(1)
Greece
(1)
Turkey
(1)
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Acidiphilium sp. AL strain:AL
Acidiphilium sp. AL strain:AL Genome sequencing and assembly
PRJNA756837
|
ENA
Cite
Bacillus sp. AL-1R isolate:AL-1R
Bacillus sp. AL-1R isolate:AL-1R Genome sequencing
PRJNA1282433
|
ENA
Cite
Trichoderma sp. Al-29
Trichoderma sp. Al-29 Genome sequencing
PRJNA1427579
|
ENA
Cite
Chrysochromulina sp. AL-TEMP
Chrysochromulina sp. (AL-TEMP and KB-HA01) Transcriptome reads
PRJNA690570
|
ENA
Cite
Pseudomonas sp. AL 58 strain:AL 58
Pseudomonas sp. AL 58 strain:AL 58 Genome sequencing and assembly
PRJNA1049181
|
ENA
Cite
Pseudoalteromonas phage AL
Pseudoalteromonas phage AL Genome sequencing and assembly
PRJNA624193
|
ENA
Cite
Alkalihalobacillus sp. AL-G
Alkalihalobacillus sp. AL-G Genome sequencing
PRJNA815688
|
ENA
Cite
Trichoderma sp. Al-21
Trichoderma sp. Al-21 Genome sequencing
PRJNA1424174
|
ENA
Cite
Clostridium sp. AL.422
Clostridium sp. AL.422 Genome sequencing and assembly
PRJNA1028343
|
ENA
Cite
Pseudomonas lopnurensis strain:AL-54
Pseudomonas lopnurensis strain:AL-54 Genome sequencing and assembly
PRJNA668544
|
ENA
Cite
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