Ali David D - OmicsDI

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Unknown (147)
Genomics (25)
Transcriptomics (17)
Proteomics (14)
Metabolomics (5)
Models (2)
Other (1)

Organisms

Homo sapiens (38)
Mus musculus (4)
Oryctolagus cuniculus (1)
Hydra vulgaris (1)
Rattus norvegicus (1)
Camelus dromedarius (1)
Microcaldota (1)
Saccharomyces cerevisiae (1)

Organisms

Homo sapiens (1)

Repository

EGA (24)
biostudies-arrayexpress (17)
MassIVE (6)
MetaboLights (5)
pride (4)
BioModels (2)
PAXDB (2)
PeptideAtlas (2)
GPMDB (1)
ENA (1)

Tissue

Others (2)
Kidney (1)
Permanent cell line cell (1)

Disease

Prostate cancer (1)
Not Available (1)

Technology Type

Mass spectrometry (5)
Mass Spectrometry (4)
Shotgun proteomics (2)
ABI_SOLID, Illumina Genome Analyzer IIx, Affymetrix_GenomeWide_SNP6.34 (1)
CAPILLARY, AB 3730xL Genetic Analyzer (1)
Illumina HiSeq 2000, Illumina MiSeq (1)
Illumina MiSeq (1)
Illumina OncoArray (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Gel-based experiment (1)

Instrument Platform

Orbitrap Exploris 480 (4)
Exactive (Thermo Scientific) (3)
Illumina NovaSeq 6000 (2)
NextSeq 500 (2)
LTQ Orbitrap Velos (2)
BD FACSARIA III (1)
Fluidigm C1 (1)
NextSeq 2000 (1)
BGISEQ-500 (1)
Ion Torrent S5 XL (1)
Illumina HiSeq 4000 (1)
Instrument (1)
LTQ Orbitrap (1)
Orbitrap Fusion Lumos (1)
MaXis (Bruker) (1)
Q Exactive (1)

Publication Date

2015 (4)
2024 (3)
2020 (3)
2016 (3)
2023 (2)
2026 (2)
2022 (2)
2018 (2)
2014 (2)
2017 (2)
2019 (2)
2021 (2)
2005 (1)
2013 (1)
2011 (1)
2010 (1)
2006 (1)

UNIPROT ID/AC

1433B_MOUSE (2)
1433E_MOUSE (2)
1433F_MOUSE (2)
1433G_MOUSE (2)
1433T_MOUSE (2)
1433Z_MOUSE (2)
2AAA_MOUSE (2)
2AAB_MOUSE (2)
3HIDH_MOUSE (2)
4F2_MOUSE (2)
5NT3B_MOUSE (2)
5NTC_MOUSE (2)
6PGD_MOUSE (2)
6PGL_MOUSE (2)
A16A1_MOUSE (2)
AAAT_MOUSE (2)
AATC_MOUSE (2)
AATM_MOUSE (2)
ABCB7_MOUSE (2)
ABCE1_MOUSE (2)
ABCF1_MOUSE (2)
ABCF2_MOUSE (2)
ACACA_MOUSE (2)
ACAD9_MOUSE (2)
ACADL_MOUSE (2)
ACADM_MOUSE (2)
ACADS_MOUSE (2)
ACBP_MOUSE (2)
ACINU_MOUSE (2)
ACL6A_MOUSE (2)

CHEBI ID

CHEBI:16811 (4)
CHEBI:25017 (4)
CHEBI:26986 (4)
CHEBI:16010 (3)
CHEBI:16335 (3)
CHEBI:16449 (3)
CHEBI:16865 (3)
CHEBI:17568 (3)
CHEBI:17754 (3)
CHEBI:17822 (3)
CHEBI:17964 (3)
CHEBI:17992 (3)
CHEBI:18186 (3)
CHEBI:18243 (3)
CHEBI:18257 (3)
CHEBI:22660 (3)
CHEBI:24266 (3)
CHEBI:25094 (3)
CHEBI:27266 (3)
CHEBI:27897 (3)
CHEBI:28044 (3)
CHEBI:28300 (3)
CHEBI:30769 (3)
CHEBI:37684 (3)
CHEBI:86348 (3)
CHEBI:111510 (2)
CHEBI:132194 (2)
CHEBI:14336 (2)
CHEBI:15428 (2)
CHEBI:15603 (2)

Metabolite Name

Leucine (3)
Methionine (3)
Threonine (3)
2-Piperidinecarboxylic acid, 1-(trimethylsilyl)-, trimethylsilyl ester (2)
4-(Trimethylsilyl)morpholine (2)
4-aminobutyric acid (2)
Adenosine (2)
Alanine (2)
Aspartic acid (2)
Butanoic acid, 2,4-bis[(trimethylsilyl)oxy]-, trimethylsilyl ester (2)
Cyclopentanecarboxylic acid, 1-amino-, bis(trimethylsilyl) deriv. (2)
Cyclopentene, 3-methyl-1-(trimethylsilyloxy)- (2)
Eicosane (2)
Gluconic acid (2)
Glutamine (2)
Glycine d5 (2)
Hexadecanoic acid (2)
L-Aspartic acid, N-(trimethylsilyl)-, bis(trimethylsilyl) ester (2)
L-Isoleucine, N-(trimethylsilyl)-, trimethylsilyl ester (2)
L-Leucine, N-(trimethylsilyl)-, trimethylsilyl ester (2)
Lysine (2)
Mannose (2)
N,O-Bis-(trimethylsilyl)-2-pyrrolidone carboxylic acid (2)
Norvaline (2)
Octadecanoic acid (2)
Oleic acid (2)
Ornithine (2)
Pentadecane (2)
Phenylalanine (2)
Phosphate (2)

First Public Date

2024 (1)

Modelling Approach

Computational model (1)
Ordinary differential equation model (1)

Lab affiliation

Department of Biochemistry & Pharmacology, Bio21 Molecular Science and Biotechnology Institute The University of Melbourne, Victoria, 3010 Australia (1)
Department of Molecular Biology and Genetics, Gebze Technical University, 41400, Kocaeli, Turkey (1)
Department of Molecular Genetics and Cell Biology, University of Chicago, Chicago, IL, USA. (1)
Molecular Neuroendocrinology group, Bristol Medical school, University of Bristol (1)

IsPrivate

False (2)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

Study type

Transcription profiling by array (7)
RNA-seq of coding RNA (5)
Baseline (1)
RNA-seq of non coding RNA from single cells (1)
ChIP-chip by tiling array (1)
Spatial transcriptomics by high-throughput sequencing (1)
Single nucleus RNA sequencing (1)

Release Date

2022 (24)
2025 (21)
2023 (19)
2021 (17)
2024 (16)
2020 (13)
2018 (9)
2019 (8)
2015 (7)
2016 (6)
2014 (6)
2026 (5)
2011 (4)
2017 (4)
2010 (2)
2013 (1)
2006 (1)
2012 (1)

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Metabolomic Profiling of Submaximal Exercise at a Standardised Relative Intensity in Healthy Adults

Ten physically active subjects underwent two cycling exercise trials. In the first, aerobic capacity (VO2max) was determined and the second was a 45 min submaximal exercise test. Urine samples were collected separately the day before (day 1), the day of (day 2), and the day after (day 3) the submaxi...

2017-05-16 | MTBLS306 | MetaboLights

Metabolomics analysis reveals the participation of efflux pumps and ornithine in the response of Pseudomonas putida DOT-T1E cells to challenge with propranolol

Efflux pumps are critically important membrane components that play a crucial role in strain tolerance in Pseudomonas putida to antibiotics and aromatic hydrocarbons that result in these toxicants being expelled from the bacteria. Here, the effect of propranolol on P. putida was examined by sudden a...

2016-08-23 | MTBLS320 | MetaboLights

Rare diseases in Tanzania: a National Call for Action to address policy and urgent needs of individuals with rare diseases.

Not available

S-EPMC9446714 | biostudies-literature

NQO1 protects obese mice through improvements in glucose and lipid metabolism.

Chronic nutrient excess leads to metabolic disorders and insulin resistance. Activation of stress-responsive pathways via Nrf2 activation contributes to energy metabolism regulation. Here, inducible activation of Nrf2 in mice and transgenesis of the Nrf2 target, NQO1, conferred protection from diet-...

2024-05-23 | MTBLS2085 | MetaboLights

Acute lung injury results from innate sensing of viruses by an ER stress pathway

Incursions of new pathogenic viruses into humans from animal reservoirs are occurring with alarming frequency. The molecular underpinnings of immune recognition, host responses, and pathogenesis in this setting arepoorly understood. We studied pandemic influenza viruses to determine the mechanism by...

ORGANISM(S): Mus musculus

2015-07-06 | E-GEOD-65075 | biostudies-arrayexpress

Comparison of plasmin with recombinant tissue-type plasminogen activator in lysis of cerebral thromboemboli retrieved from patients with acute ischemic stroke.

Not available

S-EPMC3217902 | biostudies-literature

Association of hospital profit status with operative rates for acute appendicitis.

Not available

S-EPMC12540028 | biostudies-literature

Clinicopathologic Significance of Mismatch Repair Defects in Endometrial Cancer: An NRG Oncology/Gynecologic Oncology Group Study.

Not available

S-EPMC5012715 | biostudies-literature

T Cells Genetically Modified to Express an Anti-B-Cell Maturation Antigen Chimeric Antigen Receptor Cause Remissions of Poor-Prognosis Relapsed Multiple Myeloma.