Allen S S - OmicsDI

Show results for

Unknown (6338)
Transcriptomics (153)
Proteomics (71)
Genomics (49)
Metabolomics (33)
Genomic (3)
Models (2)

Organisms

Homo sapiens (124)
Mus musculus (41)
Rattus norvegicus (14)
Saccharomyces cerevisiae (14)
Arabidopsis thaliana (4)
Picea glauca (3)
Medicago truncatula (3)
Emiliania huxleyi (3)
Daphnia magna (2)
Vitis vinifera (2)
Nicotiana tabacum (2)
Escherichia coli str. K-12 substr. MG1655 (2)
Phaeodactylum tricornutum (2)
Xenopus laevis (2)
Ictalurus punctatus x Ictalurus furcatus (1)
Drosophila serrata (1)
Vitis labrusca x Vitis vinifera (1)
Thalassiosira pseudonana CCMP1335 (1)
marine metagenome (1)
Thalassiosira pseudonana (1)
Salmonella enterica (1)
Macaca mulatta (1)
Loxodonta africana (1)
Ectocarpus siliculosus (1)
Fragilariopsis cylindrus (1)
Oryza sativa Indica Group (1)
Zea mays (1)
Schizosaccharomyces pombe (1)
Oryza sativa (1)
Trypanosoma brucei (1)

Organisms

Mus musculus (3)
Theobroma cacao (1)
Solanum tuberosum (1)
Vibrio parahaemolyticus (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (162)
pride (56)
EGA (32)
MetaboLights (29)
MassIVE (11)
ENA (7)
GNPS (4)
dbGaP (3)
PanoramaPublic (3)
BioModels (2)
geo (2)
jPOST (1)

Tissue

Cell culture (15)
Epithelial cell (5)
Blood platelet (3)
Brain (3)
Blood (2)
Blood plasma (2)
Lung (2)
Macrophage (2)
Neuron (2)
Photosynthetic cell (2)
Platelet (2)
Adrenal gland (1)
Astrocyte (1)
B cell (1)
Blood cell (1)
Cell suspension culture (1)
Cerebellar neuron (1)
Cervical epithelial cell (1)
Cotyledon (1)
Embryo (1)
HeLa cell (1)
Intestine (1)
Kidney (1)
Kidney epithelial cell (1)
LCL-721 cell (1)
LNCaP cell (1)
Leukocyte (1)
Lung neuroendocrine cell (1)
Malignant cell (1)
Microglial cell (1)

Disease

Colorectal cancer (3)
Cervix carcinoma (2)
Colon cancer (1)
Normal (1)
Acquired immunodeficiency syndrome (1)
Cardiovascular system disease (1)
Castration-resistant prostate carcinoma (1)
Colorectal carcinoma (1)
Disease free (1)
Fibrolamellar carcinoma (1)
Glaucoma (1)
Inflammation (1)
Influenza (1)
Lung cancer (1)
Lung squamous cell carcinoma (1)
Neuroblastoma (1)
Neurofibromatosis 1 (1)
Pancreatic ductal adenocarcinoma (1)
Small cell carcinoma (1)
Squamous cell carcinoma (1)

Technology Type

Mass Spectrometry (56)
Shotgun proteomics (30)
Mass spectrometry (25)
Affinity purification coupled with mass spectrometry proteomics (12)
Data-dependent acquisition (6)
Bottom-up proteomics (5)
NMR spectroscopy (4)
Illumina HiSeq 2000 (3)
Data-independent acquisition (3)
SWATH MS (3)
Top-down proteomics (3)
Gel-based experiment (2)
Affymetrix 6.0, Illumina_670k - Illuminus, Illumina 1.2M (1)
Illumina Genome Analyzer II (1)
Illumina MiSeq (1)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
MSE (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (11)
Liquid Chromatography MS - negative - reverse phase (8)
Illumina NovaSeq 6000 (7)
Orbitrap Exploris 480 (3)
Q Exactive (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - positive (3)
Illumina HiSeq 2000 (2)
Illumina HiSeq 4000 (2)
Agilent 6530 Accurate Mass Q-TOF (2)
Bruker (2)
Direct infusion MS - positive (2)
Liquid Chromatography MS - alternating - hilic (2)
Agilent Tapestation 4200 (1)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
GeneChip Scanner 3000 [Affymetrix] (1)
DNA Microarray Scanner BA [Agilent Technologies] (1)
Scanning hardware (1)
Illumina HiSeq X (1)
N/A (1)
Illumina HiSeq 2500 (1)
NextSeq 500 (1)
6530 Quadrupole Time of Flight MS (Agilent Instrument) (1)
Orbitrap Exploris 240 (1)
LTQ (1)
LTQ Orbitrap Velos (1)
Orbitrap Eclipse (1)
Orbitrap Fusion Lumos (1)
Synapt G2-S HDMS (1)

Publication Date

2014 (23)
2015 (22)
2024 (17)
2010 (17)
2008 (17)
2016 (16)
2012 (16)
2023 (16)
2013 (15)
2025 (14)
2022 (14)
2021 (14)
2011 (14)
2009 (11)
2019 (8)
2017 (7)
2007 (7)
2026 (5)
2020 (4)
2006 (4)
2018 (4)

CHEBI ID

CHEBI:16704 (12)
CHEBI:18237 (12)
CHEBI:28044 (12)
CHEBI:17368 (11)
CHEBI:15741 (10)
CHEBI:16335 (10)
CHEBI:18186 (10)
CHEBI:15891 (9)
CHEBI:16919 (9)
CHEBI:17568 (9)
CHEBI:17596 (9)
CHEBI:27897 (9)
CHEBI:15354 (8)
CHEBI:16750 (8)
CHEBI:17154 (8)
CHEBI:17858 (8)
CHEBI:18012 (8)
CHEBI:25017 (8)
CHEBI:28842 (8)
CHEBI:29016 (8)
CHEBI:30769 (8)
CHEBI:16196 (7)
CHEBI:16708 (7)
CHEBI:16811 (7)
CHEBI:16856 (7)
CHEBI:17562 (7)
CHEBI:25094 (7)
CHEBI:7916 (7)
CHEBI:15318 (6)
CHEBI:15611 (6)

Metabolite Name

Hypoxanthine (7)
Inosine (7)
Adenosine (6)
L-Lactic acid (6)
Phenylalanine (6)
Succinic acid (6)
Uridine (6)
Choline (5)
Citric acid (5)
Creatine (5)
Cytidine (5)
Guanosine (5)
L-Tyrosine (5)
Uracil (5)
Xanthine (5)
ADP (4)
AMP (4)
Adenine (4)
Alanine (4)
Creatinine (4)
Glycine (4)
L-Aspartic acid (4)
L-Cysteine (4)
L-Isoleucine (4)
L-Methionine (4)
L-Phenylalanine (4)
L-Threonine (4)
L-Tryptophan (4)
L-Valine (4)
Leucine (4)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

First Public Date

2017 (2)
2013 (2)
2026 (1)
2023 (1)
2014 (1)

Classification

bacteria (1)

Modelling Approach

Constraint-based model (1)
Ordinary differential equation model (1)

Study type

Transcription profiling by array (91)
RNA-seq of coding RNA (22)
ChIP-seq (8)
Unknown experiment type (6)
Comparative genomic hybridization by array (5)
RNA-seq of non coding RNA (5)
Transcription profiling by SAGE (3)
Other (3)
RNA-seq of coding RNA from single cells (3)
ChIP-chip by tiling array (2)
Transcription profiling by tiling array (2)
Genotyping by array (2)
Differential (1)
Animal - One-color microarray (1)
High-throughput sequencing (1)
RNAi profiling by array (1)
Transcription profiling by RT-PCR (1)
DNA-seq (1)
Methylation profiling by array (1)
Methylation profiling by high throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2023 (691)
2022 (639)
2025 (631)
2021 (620)
2024 (613)
2020 (516)
2019 (436)
2018 (412)
2017 (335)
2015 (287)
2016 (286)
2014 (219)
2011 (139)
2013 (129)
2012 (122)
2010 (103)
2026 (98)
2009 (71)
2008 (45)
2007 (33)
2006 (24)
2004 (12)
2005 (10)
2002 (8)
2003 (6)
2001 (6)
2000 (3)
1998 (2)
1999 (1)
1997 (1)

Lab affiliation

The Institute of Cancer Research (2)
University of the Pacific (2)
1. Microbial and Environmental Genomics, J. Craig Venter Institute, La Jolla, CA 92037, USA 2. Integrative Oceanography Division, Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA (1)
Agios Pharmaceuticals 88 Sidney Street Cambridge MA 02139 USA (1)
Associate Professor Systems Virology Department of Translation medicine Faculty of Medicine Lund University Sweden (1)
CMU, University of Geneva (1)
Calico Life Sciences (1)
Center for Neuroscience and Cell Biology (1)
Centre For Eye Research Australia(CERA) (1)
Centre Médical Universitaire, University of Geneva (1)
Children's Medical Research Institute. Telomere Length Regulation Unit. (1)
Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton 3800, Victoria, Australia (1)
Department of Biochemistry, Mass Spectrometry Research Center, Vanderbilt University (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Department of Biological Sciences, Tomida Lab, University of North Carolina at Charlotte, USA (1)
Department of Cell Biology and Physiology, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, United States. (1)
Department of Molecular Cell Biology, Weizmann Institute of Science, Rehovot, Israel. (1)
Department of Molecular Medicine, The Scripps Research Institute (1)
Department of Molecular Medicine, The Scripps Research Institute, La Jolla, California 92037 United States (1)
Department of Molecular Systems Biology, Helmholtz-Centre for Environmental Research - UFZ, Leipzig, Germany (1)
Department of Pathology Cancer Center Stony Brook University (1)
Department of Pharmaceutical Sciences, Temple University School of Pharmacy, Temple University (1)
Department of Pharmacology University of North Carolina - Chapel Hill Chapel Hill, NC 27599 (1)
Dept. Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Munich, Germany (1)
Director of Research Head, Signalling and Transcription Group The Francis Crick Institute 1 Midland Road, London NW11AT, UK (1)
Faculty of Biology Medicine and Health, Wellcome Trust Centre for Cell-Matrix Research, Manchester Centre University of Manchester, United Kingdom (1)
Hospital of the University of Pennsylvania 3400 Civic Center Boulevard, South Pavilion, 11-176 Philadelphia, PA 19104 (1)
Institute of Biological, Environmental and Rural Sciences (IBERS), Aberystwyth University, Edward Llwyd Z2.01. (1)
Institute of Epigenetics and Stem Cells (IES), Helmholtz Zentrum München, Marchioninistrasse 25, D-81377 München, Germany and Wellcome Trust – CRUK Gurdon Institute, University of Cambridge, Tennis Court Rd, Cambridge CB2 1QN, United Kingdom (1)
Institute of Structural and Molecular Biology, University College London, London, United Kingdom (1)

Previous page
1 / 665
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 665
Next page

Sort by:

Relevance

Page size

In Vivo Mapping of Arabidopsis Scaffold/Matrix Attachment Regions Reveals Link to Nucleosome-Disfavoring Poly(dA:dT) Tracts

Scaffold or matrix attachment regions (S/MARs) are found in all eukaryotes. The pattern of distribution and genomic context of S/MARs is thought to be important for processes such as chromatin organization and modulation of gene expression. Despite the importance of such processes, much is unknown a...

ORGANISM(S): Arabidopsis thaliana

2014-02-03 | E-GEOD-45549 | biostudies-arrayexpress

The identification of the Rosa S-locus and implications on the evolution of the Rosaceae gametophytic self-incompatibility systems.

Not available

S-EPMC7881130 | biostudies-literature

Dual RNA-seq of THP-1 macrophages infected with JE2 WT and ΔessC at 2 and 6 hours post infection

This experiment was conducted to uncover global transcription differences caused by Staphylococcal T7SS during early and mid-late macrophage infection.

ORGANISM(S): mixed sample

2026-01-01 | E-MTAB-16250 | biostudies-arrayexpress

Development of persistent gastrointestinal S. aureus carriage in mice.

Not available

S-EPMC5622074 | biostudies-literature

Study protocol for a randomised controlled trial of Allen Carr's Easyway programme versus Lambeth and Southwark NHS for smoking cessation.

Not available

S-EPMC5735399 | biostudies-literature

A flow cytometric method for estimating S-phase duration in plants.

Not available

S-EPMC5100020 | biostudies-literature

Constructing an adult orofacial premotor atlas in Allen mouse CCF.

Not available

S-EPMC8137149 | biostudies-literature

LC-HRMS Metabolomics for Untargeted Diagnostic Screening in Clinical Laboratories: A Feasibility Study

Today's high-resolution mass spectrometers (HRMS) allow bioanalysts to perform untargeted/global determinations that can reveal unexpected compounds or concentrations in a patient’s sample. This could be performed for preliminary diagnosis attempts when usual diagnostic processes and targeted ...

2019-06-06 | MTBLS476 | MetaboLights

The Role of Outer Membrane Protein(s) Harboring SLH/OprB-Domains in Extracellular Vesicles' Production in Synechocystis sp. PCC 6803.

Not available

S-EPMC8707739 | biostudies-literature

Cytosolic G{alpha}s acts as an intracellular messenger to increase microtubule dynamics and promote neurite outgrowth.

Not available

S-EPMC2667733 | biostudies-literature

Previous page
1 / 665
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 665
Next page

Sort by:

Relevance

Page size

6650 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

CHEBI ID

Metabolite Name

IsPrivate

Model Flag

First Public Date

Classification

Modelling Approach

Study type

Release Date

Lab affiliation

Tags

OmicsDI is part of the ELIXIR infrastructure

Tweets