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ProteomicsNon-canonical splicing junctions between exons and transposable elements represent a source of immunogenic recurrent neo-antigens in cancer patients
ost characterized tumor antigens are ‘genomic’, i.e. encoded by canonical, non-canonical or somatically mutated genomic sequences. We investigate here the presentation and immunogenicity of tumor antigens derived from non-canonical mRNA splicing events between coding exons and transposable elements ...
ORGANISM(S): Homo sapiens (Human) 
2023-02-27 | PXD034820 | Pride
Transposable element Human Non-canonical splicing Neoantigen Immunopeptidomics 
GenomicsH3K4me3 chromatin profiling in SUMOylation-competent and -deficient bone marrow derived dendritic cells unstimulated or stimulated with LPS
Purpose: To determine H3K4me3 chromatin profile in UBC9WT and UBC9KO BMDC before and after LPS stimulation. Methods: H3K4me3 chromatin profile was determined by sequencing UBC9 WT and UBC9 KO BMDC chromatin immunoprecipitated with antibody specific for H3K4me3. Results: We show differential chromati...
ORGANISM(S): Mus musculus 
2015-12-14 | E-GEOD-66338 | biostudies-arrayexpress
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