An Bo B - OmicsDI

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Unknown (907)
Transcriptomics (226)
Proteomics (128)
Metabolomics (60)
Genomics (44)
Models (6)
Multiomics (6)
Other (3)

Organisms

Homo sapiens (133)
Mus musculus (73)
Arabidopsis thaliana (11)
Sus scrofa (10)
Escherichia coli str. K-12 substr. MG1655 (7)
Zea mays (6)
Saccharomyces cerevisiae (6)
Rattus norvegicus (6)
Drosophila melanogaster (4)
Oryza sativa Indica Group (3)
Danio rerio (3)
Macaca mulatta (2)
Xenopus laevis (2)
Picea abies (2)
Gadus morhua (2)
Triticum aestivum (2)
Gallus gallus (2)
Mammalia (1)
Trametes versicolor (1)
Triticum carthlicum (1)
Streptococcus suis P1/7 (1)
Pinellia pedatisecta (1)
Streptomyces bingchenggensis (1)
Xylella fastidiosa Temecula1 (1)
Thermotoga maritima MSB8 (1)
Cordyceps militaris (1)
Manihot esculenta (1)
Acetobacter aceti NBRC 14818 (1)
Citrullus lanatus (1)
Pseudomonas aeruginosa PA14 (1)

Organisms

Homo sapiens (2)
synthetic construct (1)

Repository

biostudies-arrayexpress (244)
MetaboLights (59)
pride (52)
iProX (48)
EGA (24)
MassIVE (21)
BioModels (5)
ENA (4)
GPMDB (3)
PeptideAtlas (3)
FAIRDOMHub (1)
geo (1)
GNPS (1)
jPOST (1)
PanoramaPublic (1)

Tissue

Cell culture (11)
Others (3)
Blood (2)
Embryo (2)
Embryonic stem cell (2)
Fibroblast (2)
Fungal cell (2)
Leaf (2)
Macrophage (2)
Plant cell (2)
Testis (2)
Blood cell (1)
Blood plasma (1)
Brain (1)
Colon (1)
Colonic mucosa (1)
Early embryonic cell (1)
Embryonic fibroblast (1)
Endothelium (1)
Epithelial cell (1)
Epithelial melanocyte (1)
Erythrocyte (1)
Fibroblast of lung (1)
Gland (1)
Haematopoietic stem cells (1)
Head (1)
Hepatocyte (1)
Intestinal mucosa (1)
Kidney cell (1)
Lens (1)

Disease

Disease free (6)
Not Available (3)
Normal (2)
Tuberculosis (1)
SMARD1 (1)
Mock inoculated (1)
Chronic lymphocytic leukemia (1)
Acute leukemia (1)
Alzheimer's disease (1)
Aortic aneurysm (1)
Breast cancer (1)
Colon cancer (1)
Duodenal ulcer (1)
Fungal infectious disease (1)
Obesity (1)

Technology Type

Mass Spectrometry (52)
Mass spectrometry (46)
Shotgun proteomics (27)
Bottom-up proteomics (14)
Mass spectrometry assay (12)
Data-dependent acquisition (7)
Affinity purification coupled with mass spectrometry proteomics (3)
NMR spectroscopy (2)
Data-independent acquisition (2)
Gel-based experiment (2)
SWATH MS (2)
Illumina 450K, Bisulfite-Seq (1)
Illumina HiSeq 2000, NextSeq 500, ILLUMINA (1)
ILLUMINA, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, ILLUMINA (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (22)
Liquid Chromatography MS - negative - reverse phase (15)
Q Exactive (10)
NextSeq 500 (7)
Illumina HiSeq 2000 (5)
Exactive (Thermo Scientific) (5)
Liquid Chromatography MS - negative - hilic (5)
Illumina HiSeq 2500 (3)
Instrument (3)
MS:1000031 (3)
LTQ Orbitrap Elite (3)
Illumina Genome Analyzer II (2)
Illumina NovaSeq 6000 (2)
Orbitrap Fusion Lumos (2)
Q Exactive HF (2)
Q Exactive Plus (2)
Infors-HT Labfors chemostat (1)
PacBio RS II (1)
Sequel (1)
Gene Titan (1)
ArrayWoRx Biochip Reader [Applied Precision] (1)
Illumina NovaSeq X (1)
Illumina HiSeq 4000 (1)
LTQ FT (1)
MaXis (1)
Agilent 6495B QQQ mass spectrometer (1)
LTQ Orbitrap (1)
Orbitrap Fusion (1)
TimsTOF Pro (1)
TripleTOF 6600 (1)

Publication Date

2014 (49)
2022 (32)
2016 (32)
2012 (30)
2024 (29)
2013 (29)
2015 (28)
2011 (28)
2026 (26)
2023 (23)
2010 (22)
2025 (18)
2020 (18)
2021 (15)
2008 (12)
2019 (10)
2009 (10)
2017 (9)
2018 (8)
2007 (6)
2006 (1)
2005 (1)
2004 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17568 (17)
CHEBI:17368 (16)
CHEBI:30769 (16)
CHEBI:16708 (15)
CHEBI:16704 (15)
CHEBI:17509 (14)
CHEBI:15741 (14)
CHEBI:16750 (14)
CHEBI:15428 (14)
CHEBI:16335 (14)
CHEBI:17596 (14)
CHEBI:15756 (14)
CHEBI:16359 (13)
CHEBI:7916 (13)
CHEBI:16610 (12)
CHEBI:17821 (12)
CHEBI:16643 (12)
CHEBI:17351 (12)
CHEBI:17822 (11)
CHEBI:28044 (11)
CHEBI:28790 (11)
CHEBI:32816 (11)
CHEBI:18012 (11)
CHEBI:17154 (11)
CHEBI:17895 (11)
CHEBI:25017 (10)
CHEBI:48131 (10)
CHEBI:16857 (10)
CHEBI:28842 (10)
CHEBI:16196 (10)

Metabolite Name

Uracil (12)
Guanosine (11)
Hypoxanthine (11)
Adenosine (10)
Inosine (10)
Adenine (9)
L-Histidine (8)
Cholic acid (7)
Riboflavin (7)
Palmitic acid (7)
Maltotriose (7)
Linoleic acid (7)
Cytidine (7)
Uridine (7)
Thymine (6)
Uracil (6)
Glycine (6)
Betaine (6)
9-OxoODE (6)
Phytosphingosine (6)
Ergothioneine (6)
Traumatic acid (6)
Guanine (6)
Glucose (6)
L-Serine (6)
Xanthine (6)
L-Methionine (6)
L-Tyrosine (6)
2-oxindole-3-acetic acid|5-methoxyindole-2-carboxylic acid|5-hydroxyindole-3-acetic acid (5)
Tuberonic acid (5)

First Public Date

2025 (1)
2022 (1)
2017 (1)
2014 (1)

Modelling Approach

Constraint-based model (3)
Ordinary differential equation model (2)

Lab affiliation

College of Animal Sciences, Zhejiang University, Hangzhou, P. R. China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China. (2)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (2)
Academy of Military Medical Sciences, China (1)
Bristol Dental School, University of Bristol (1)
CAS Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences, Shanghai 200032, China (1)
CNIO (1)
Chair of Proteomics and Bioanalytics, TU Munich (1)
Copenhagen Center for Glycomics, University of Copenhagen (1)
Department of Biomolecular Sciences University of Urbino "Carlo Bo" Campus Scientifico Enrico Mattei, Via Cà le Suore, 2 61029 Urbino (PU) ITALY (1)
Department of Chemical Engineering, Department of Bioengineering, University of California, Santa Barbara, USA (1)
Department of Comparative Biosciences,University of Illinois Urbana-Champaign (1)
Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA (1)
Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. (1)
Department of urology, West China Hospital, Sichuan University (1)
Dept. Oncology Pathology, Karolinska Institutet, and ScilifeLab, Stockholm, Sweden (1)
Division of Chemistry I, MBB, Karolinska Institutet (1)
Head of Proteomics (1)
Head of Proteomics Unit Spanish National Cancer Research Centre (CNIO) Melchor Fernández Almagro, 3. 28029 Madrid. SPAIN +34 917 328 000 Ext. 3110 (1)
Histone Modifications Group Zentrallabor für Proteinanalytik BioMedical Center Faculty of Medicine Ludwig-Maximilians-University of Munich (1)
Jiangxi Province Key Laboratory of Laboratory Medicine, Department of Clinical Laboratory, The Second Affiliated Hospital of Nanchang University, Nanchang, China. (1)
Key Laboratory of Crop Ecophysiology and Farming Systems in the Middle Reaches of the Yangtze River, Ministry of Agriculture, P.R. China; College of Plant Science and Technology, Huazhong Agricultural University, 430070, Wuhan, Hubei, China (1)
Laboratory of Animal Biotechnology, Faculty of Veterinary Sciences, Department of Animal Science, Universidad de Concepción, Chillán, Chile. (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Science, Xujiaping No.1, Lanzhou, Gansu, 730046 (1)
Leibniz Institute on Aging, Fritz Lipmann Institute (FLI) (1)
Liisa Arike, PhD Researcher Mucin Biology Group Department of Medical Biochemistry and Cell Biology University of Gothenburg Sweden (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
Ocean University of China (1)
Proteomics (1)
Proteomics laboratory, Mucin Biology Groups, Department of Medical Biochemistry and Cell Biology, University of Gothenburg, Sweden (1)

IsPrivate

False (5)

Model Flag

Non Kinetic (3)

Modification

6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (141)
RNA-seq of coding RNA (41)
ChIP-seq (14)
RNA-seq of non coding RNA (11)
ChIP-chip by tiling array (6)
Comparative genomic hybridization by array (5)
Transcription profiling by tiling array (3)
Other (3)
Methylation profiling by array (3)
Unknown experiment type (2)
Antigen profiling (2)
Transcription profiling by RT-PCR (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of total RNA (2)
Plant - High-throughput sequencing (1)
High-throughput sequencing (1)
Genotyping by array (1)
ATAC-seq (1)
ScATAC-seq (1)
MicroRNA profiling by array (1)

Release Date

2022 (127)
2025 (106)
2021 (101)
2023 (97)
2024 (96)
2020 (79)
2014 (63)
2015 (57)
2012 (51)
2019 (49)
2018 (49)
2016 (49)
2011 (45)
2013 (44)
2017 (41)
2010 (32)
2009 (21)
2026 (16)
2008 (15)
2007 (8)
2005 (2)
2004 (2)
2006 (1)

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Untargeted metabolomics analysis of BO, GSC and GSC-BO (CO) groups

Patient-derived GBM stem-like cells (GSCs) were first cultured to form glioma spheroids and then co-cultured with the brain organoid (BO) derived from fetal rat brains for 72 hours. To investigate the metabolite produced by GBM under physiological conditions, , we used an in vitro co-culture model f...

2026-04-15 | MTBLS14187 | MetaboLights

Communication between R481 and Cu(B) in cytochrome bo(3) ubiquinol oxidase from Escherichia coli.

Not available

S-EPMC3418816 | biostudies-literature

Transition-metal-like bonding behaviors of a boron atom in a boron-cluster boronyl complex [(η⁷-B₇)-B-BO].

Not available

S-EPMC8208299 | biostudies-literature

Transcription profiling of human B-cell chronic lympocytic leukemia patients in indolent or progressive phase

Objective. B-cell chronic lymphocytic leukemia is a heterogeneous disease with a pronounced variation in the clinical course. With the purpose of identifying genes that could be related to disease progression, we have performed gene expression profiling on B-CLL patients with an indolent disease and...

ORGANISM(S): Homo sapiens

2007-08-25 | E-GEOD-2403 | biostudies-arrayexpress

BN- and BO-Doped Inorganic-Organic Hybrid Polymers with Sulfoximine Core Units.

Not available

S-EPMC6790941 | biostudies-literature

Not available

S-EPMC9814638 | biostudies-literature

Epstein-Barr Virus Exploits Intrinsic B-Lymphocyte Transcription Programs to Achieve Immortal Cell Growth

Epstein-Barr Virus Nuclear Antigen 2 (EBNA2) gene regulation through the cell RBPJ transcription factor (TF) is essential for conversion of resting B-lymphocytes (RBLs) into Lymphoblastoid Cell Lines (LCLs). ChIP-seq investigation of EBNA2 and RBPJ sites in LCL DNA found EBNA2 at 5151 and RBPJ at 10...

ORGANISM(S): Homo sapiens

2011-07-01 | E-GEOD-29498 | biostudies-arrayexpress

Effects of the Entomopathogenic Fungus Mucor hiemalis BO-1 on the Physical Functions and Transcriptional Signatures of Bradysia odoriphaga Larvae.

Not available

S-EPMC9964685 | biostudies-literature

Accommodation of two diatomic molecules in cytochrome bo: insights into NO reductase activity in terminal oxidases.

Not available

S-EPMC2651033 | biostudies-literature

Characterization and Investigation of Novel Benzodioxol Derivatives as Antidiabetic Agents: An In Vitro and In Vivo Study in an Animal Model.

Not available

S-EPMC10604990 | biostudies-literature